U insertion/deletion editing in kinetoplastid
mitochondria
Sequence Database
Maxicircle Sequences:
- L. tarentolae
(partial - lacks complete divergent region; features revised on 11/7/99,
Genbank format) (download Vector NTI Viewer, and
either configure this to visualize .gb files with your browser and click
here to see graphical map of molecule, or
save the .gb file and examine it with the Viewer).
- Graphical map of L. tarentolae maxicircle
- T.
brucei
- C. fasciculata (partial - two
files)
- File 1 (9S and 12S
rRNAs, COII, 5' end of Cyb)
- File 2 (ND1, COII,
Murf2 and the 3' portion of COI)
- Phytomonas
serpens (partial)
Gene:
- Mitochondrial ribosomal RNA genes
- COI
- Edited mRNA
- Unedited mRNA
- Amino acid sequence of predicted translation product
- Bestfit alignment of proteins - L. tarentolae vs T. brucei
- COII
- Edited mRNA
- Unedited mRNA
- Amino acid sequence of predicted translation product
- Bestfit alignment of proteins - L. tarentolae vs T. brucei
- COIII
- Edited mRNA
- Unedited mRNA
- Amino acid sequence of predicted translation product
- Bestfit alignment of proteins - L. tarentolae vs T. brucei
- Cyb
- Edited mRNA
- Unedited mRNA
- Amino acid sequence of predicted translation product
- Bestfit alignment of proteins - L. tarentolae vs T. brucei
- G3 (CR3)
- Edited mRNA
- Unedited mRNA
- Amino acid sequence of predicted translation product
- G4 (CR4)
- Edited mRNA
- Unedited mRNA
- Amino acid sequence of predicted translation product
- Bestfit alignment of proteins - L. tarentolae vs T. brucei
- MURF1
- Unedited mRNA
- Amino acid sequence of predicted translation product
- Bestfit alignment of proteins - L. tarentolae vs T. brucei
- MURF2
- Edited mRNA
- Unedited mRNA
- Amino acid sequence of predicted translation product
- Bestfit alignment of proteins - L. tarentolae vs T. brucei
- A6 (MURF4)
- Edited mRNA
- Unedited mRNA
- Amino acid sequence of predicted translation product
- Bestfit alignment of proteins - L. tarentolae vs T. brucei
- MURF5
- Unedited mRNA
- Amino acid sequence of predicted translation product
- Bestfit alignment of proteins - L. tarentolae vs T. brucei
- ND1
- Unedited mRNA
- Amino acid sequence of predicted translation product
- Bestfit alignment of proteins - L. tarentolae vs T. brucei
- ND3 (G5,CR5)
- Edited mRNA
- Unedited mRNA
- Amino acid sequence of predicted translation product
- Bestfit alignment of proteins - L. tarentolae vs T. brucei
- ND4
- Unedited mRNA
- Amino acid sequence of predicted translation product
- Bestfit alignment of proteins - L. tarentolae vs T. brucei
- ND5
- Unedited mRNA
- Amino acid sequence of predicted translation product
- Bestfit alignment of proteins - L. tarentolae vs T. brucei
- ND7
- Edited mRNA
- Unedited mRNA
- Amino acid sequence of predicted translation product
- Bestfit alignment of proteins - L. tarentolae vs T. brucei
- ND8 (G1,CR1)
- Edited mRNA
- Unedited mRNA
- Amino acid sequence of predicted translation product
- Bestfit alignment of proteins - L. tarentolae vs T. brucei
- ND9 (G2,CR2)
- Edited mRNA
- Unedited mRNA
- Amino acid sequence of predicted translation product
- Bestfit alignment of proteins - L. tarentolae vs T. brucei
- RPS12 (G6,CR6)
- Edited mRNA
- Unedited mRNA
- Amino acid sequence of predicted translation product
- Bestfit alignment of proteins - L. tarentolae vs T. brucei
References and Help:
Click here to see a list of the references.
Click here to see a template describing the
features of a sequence "map".
Authors:
Larry Simpsona,b,e, Otavio Thiemanne,
Shirley Wanga, Dimitri Maslovc, and Herbert
Avilad
aHoward Hughes Medical Institute,
bDepartment of Molecular, Cell and Developmental Biology, UCLA, Los
Angeles, CA 90095-1662, and eDepartment of Medical Microbiology and
Immunology, UCLA School of Medicine
cDepartment of Biology,
University of California, Riverside, CA 92521
dDepartment of
Biochemistry, University of Kentucky Medical Center, Lexington, Kentucky
40536-0084
e Laboratory of Protein Crystallography and Structural
Biology Physics, Institute of Sao Carlos, University of Sao Paulo Av. Dr.
Carlos Botelho 1465 Zip: 13560-970, PO Box: 369, Sao Carlos - SP - Brasil
We thank Paul Sloof and Rob Benne for providing the Crithidia sequences.
The Phytomonas serpens sequences were provided by D. Maslov. The references are
Maslov
et al. (1998) and
Maslov
et al. (1999).
1-31-2012 Thanks to D. Maslov for t he L. donovani RPS12 sequences.
Click
here to return to the U-insertion/deletion RNA editing
site.
Last updated 11-29-99.