Gene: NADH dehydrogenase 7 (ND7,MURF3)
Species: Trypanosoma brucei
Notes: Two editing domains. The T at nt 728 is missing in the genomic
sequence (M94286) and in the edited RNA sequence (M55645).
1 ---------+---------+---------+-- -- - - - -- +- 41
DNA TGATACAAAAAAACATGACTACATGATAAGTA CA A G A GG AG
RNA-ed UGAUACAAAAAAACAUGACUACAUGAUAAGUAuCAuuuuAuGuuAuuuuuGGuAGuuuuu
1 ---------+---------+---------+---------+---------+---------+ 60
AA M L F L V V F
1 - - - - - - - 7
42 --- - - -- -+- --------+--- ------+------- --+- - - - 84
ACA G A CG ACA GTGTCCACAGCA CCCGTTTCAGCACA GTTG G A G
uuACAuuuGuAuCGuuuuACAuuuG GUCCACAGCAuCCCG CAGCACAuG GuGuuuuAuGu
61 ---------+---------+----- ----+---------+ --------- +---------+ 120
L H L Y R F T F G P Q H P A A H G V L C
8 - - + - - - - - - - - - + - - - - - - - 27
85 - - - - - +- ---- - - --+------ -- - + ------- --+-- 122
G A G A G GG GATA A G ATTTATTGA TG A A ATTTGTG ATTTG
uGuuuAuuGuAuuuuuGuGGuGA AuuuAuuGuuuA UAUUGAuUGuAuuAuA G GuuAUUUG
121 ---------+---------+--- ------+----- ----+---------+- - -------+ 180
C L L Y F C G E F I V Y I D C I I G Y L
28 - - + - - - - - - - - - + - - - - - - - 47
123 -------+---------+---------+---------+---------+------ ---+- 181
CATCGTGGTACAGAAAAGTTATGTGAATATAAAAGTGTAGAACAATGTCTTCCG ATTTC
CAUCGUGGUACAGAAAAGUUAUGUGAAUAUAAAAGUGUAGAACAAUGUCUUCCGuAUUUC
181 ---------+---------+---------+---------+---------+---------+ 240
H R G T E K L C E Y K S V E Q C L P Y F
48 - - + - - - - - - - - - + - - - - - - - 67
182 --------+-- - - --- - - + -- ----- - - + ------ --- 219
GACAGGTTAGA A G ATG G G G AA GAGCA G G C ATTTTG GAG
GACAGGUUAGAuuAuGuuA GuGuuuGuuGuAAuGAGCAuuuGuuGuCuuuA UGuuuuGAG
241 ---------+--------- +---------+---------+---------+- --------+ 300
D R L D Y V S V C C N E H L L S L C F E
68 - - + - - - - - - - - - + - - - - - - - 87
220 + - - ---- - - - +- --- - --- - +-- - -- - ---+---- 254
A A G GCGA G G G CG ACG G GCA A GCG A AA G ATTTTGAA
uAuAuGuuGCGAuGuuGuuuGuCGuuACGuuGuGCAuuuAuGCGuuuAuuAAuuGuA GAA
301 ---------+---------+---------+---------+---------+------- --+ 360
Y M L R C C L S L R C A F M R L L I V E
88 - - + - - - - - - - - - + - - - - - - - 107
255 -----+-- -- -- -- - + - - - -- - - -- +--- --- - 287
ACTTTCCG AG AA GG G G GTA A CA G A GG GGTA AGG G
uuuAC CCGuAGuuuuAAuGGuuuGuuGuGuAuAuCAuGuAuGGuuuuGG AuuuAGGuuGu
361 ----- ----+---------+---------+---------+--------- +---------+ 420
F T R S F N G L L C I S C M V L D L G C
108 - - + - - - - - - - - - + - - - - - - - 127
288 - -+--- ----- -+ -- -------+---------+- -- ---- -- + 330
G CTCCG GTTTA GA CA GAGGAATTTCGTTGACAAA GA GACA GA A
uuGuCUCCGuuG UUAuGAuCAuuuGAGGAA CG UGACAAAuuGAuGACAuuuuuuGAuuuA
421 ---------+-- -------+---------+ -- -------+---------+---------+ 480
L S P L L W S F E E R D K L M T F F D L
128 - - + - - - - - - - - - + - - - - - - - 147
331 ------ -- - +- - --- ----+--- -- - ---+ ---------+- 371
GTTTTG GG G CG A GCA GGCTTTCA GG A ATGG ATTCTTGATGA
uG UUGuGGuuGuCGuAuGCAuuuGGCUUUCAuGGuuuuAuuA GGuAUUCUUGAUGAuuuu
481 -- -------+---------+---------+---------+-- -------+---------+ 540
C C G C R M H L A F M V L L G I L D D F
148 - - + - - - - - - - - - + - - - - - - - 167
372 - -- - -- - - + -------- - +- - - - - --- 398
G GG G GA G G G GATTTTAA A CA G G G A GGA
GuuuuuGGuuuuGuuGAuuuuuuGuuGuuGuuGA UAAuAuCAuGuuuGuuuGuuAuGGAu
541 ---------+---------+---------+---- -----+---------+---------+ 600
V F G F V D F L L L L I I S C L F V M D
168 - - + - - - - - - - - - + - - - - - - - 187
399 - + -- - - - --- -+--- - -- --- +----- -- - -+ 430
G A GA G A G GGG AATCG A TA GCG GCTTTG GG G CA
uGuuAuGAuuuGuuAuuuGuGGGuAAUCGuuuAuuuUAuuuGCGuuuGC GuGGuuuGuCA
601 ---------+---------+---------+---------+--------- +---------+ 660
C Y D L L F V G N R L F Y L R L R G L S
188 - - + - - - - - - - - - + - - - - - - - 207
431 -- - - -- ---+ --------- +-- -- - - - -- +- - 462
GA A A GA ATTG ATTATTTAG AAG GG G G C CG CG A
uuuuuuGAuuuAuAuGAuuuA GuuuuuA A UAGuuuAAGuGGuGuuuuGuCuCGuuCGuuA
661 ---------+---------+- ------- - +---------+---------+---------+ 720
F F D L Y D L V F N S L S G V L S R S L
208 - - + - - - - - - - - - + - - - - - - - 227
463 -- - -- - -+-- ---- - -- + ---------+---- -- - - - + - 501
GG A GG G GAGA GTCG A AG G ATTTTTGATTTTTG TG A A G G A
GGuAuGGuGuGAGAuuGUCGuuuAuuuAGuuGuuA UGA GuUGuAuuuuAuGuuuuGuuAu
721 ---------+---------+---------+----- --- -+---------+---------+ 780
G M V W D C R L F S C Y E L Y F M F C Y
228 - - + - - - - - - - - - + - - - - - - - 247
502 -- - - - - --+ -- --- ----+- - --- - --- 529
GA A G G A AGG GA GCA GATTCG A ACG G GAT
GAuuAuuGuuuuuGuuuuAuAGGuGAuGCAuuuGA UCGuuuAuuuuuACGuuuGuuuGAU
781 ---------+---------+---------+----- ----+---------+---------+ 840
D Y C F C F I G D A F D R L F L R L F D
248 - - + - - - - - - - - - + - - - - - - - 267
530 + --- - --- - -+ - ------ - - +- - ------- 559
A GCG A GAG G GA G AAGCAA G G GG G GTTTTTG
AuGCGuAuGAGuuuGuuGAuuuGuAAGCAAuGuuuuuuuGuuGGuuuuuuuGuuuuuG Gu
841 ---------+---------+---------+---------+---------+-------- -+ 900
M R M S L L I C K Q C F F V G F F V F G
268 - - + - - - - - - - - - + - - - - - - - 287
560 + - - ---- - - - + -- - ---- --+-------- - + - - 592
G G G GTTA A A A G GA A ACCA GTTTTAGACCA A A G A
uuuGuuuGuuuGuuuG AuuAuuuAuAuuGuGAuAuuACCAuuG AGACCAuuAuuAuGuuA
901 ---------+------ ---+---------+---------+--- ------+---------+ 960
F V C L F D Y L Y C D I T I E T I I M L
288 - - + - - - - - - - - - + - - - - - - - 307
593 - -- - -- - + - ------ - -+--- ------+- --------+ 630
A AG G GG G G G GCCGGG A ATTCA GCTTTGTG GAACACCCC
uuuuAuAGuuuGuGGuGuuGuuGuuuGCCGGGuAuA UCAuuuGC UUGUGuuGAACACCCC
961 ---------+---------+---------+------ ---+---- -----+---------+ 1020
F Y S L W C C C L P G I S F A C V E H P
308 - - + - - - - - - - - - + - - - - - - - 327
631 ----- ----+- - - - - ----+-- - - -- - - -+-- --- - 666
AAAGG GATTTG A G G A ATTTTTG G G GG A G CTCG ACG G
AAAGGuGA GuAuuGuuuGuuAuuA UGuuuuuGuGuuGGuuuAuGuuCUCGuuuACGuuuG
1021 -------- -+---------+---- -----+---------+---------+---------+ 1080
K G E Y C L L L C F C V G L C S R L R L
328 - - + - - - - - - - - - + - - - - - - - 347
667 -- - +---- -----+---- - --- - + --- -- - - 697
CG G GCGGA GCATTATTTG A GGA G G GCG GG A G
CGuuGuGCGGAuuuuuuGCA UAUUUGuuuAuuGGAuGuuuGuuuGCGuGGuuuuuuAuuG
1081 ---------+---------+ ---------+---------+---------+---------+ 1140
R C A D F L H I C L L D V C L R G F L L
348 - - + - - - - - - - - - + - - - - - - - 367
698 -- +- -- ------+- --- -- - -- + - --- -----+---- --- 737
CA GA AG GCTTTCTG AGG AA A GA G G GGA CCGTAGATCG ATG
CAuGAuuuAGuuGC C GuuuuAGGuAAuAuuGAuGuuGuuuuuGGAuCCGUAGAUCGuuA G
1141 ---------+---- - ----+---------+---------+---------+--------- + 1200
H D L V A V L G N I D V V F G S V D R *
368 - - + - - - - - - - - - + - - - - - - 386
738 - - + ---------+-------- -+---------+---------+--- 783
A A G GTTATTTTTTGGTTATTG AGGATTGTTTAAAATTGAATAAAAA
uuuuAuAuGuG A GGUUAUUGuAGGAUUGUUUAAAAUUGAAUAAAAA
1201 ---------+- - -------+---------+---------+------ 1246