Gene: Cytochrome oxidase 2 Species: Trypanosoma brucei Notes: The 5' ends of edited and preedited mRNAs were mapped by primer extension to +1 (A. Estevez and L. Simpson, unpublished). 1 ---------+---------+---------+---------+---------+---------+ 60 DNA ATCTAAATGTAATAATAACAAATGAGTTTTATATTAACTTTTTGAATGATATTTTTAATG RNA-ed AUCUAAAUGUAAUAAUAACAAAUGAGUUUUAUAUUAACUUUUUGAAUGAUAUUUUUAAUG 1 ---------+---------+---------+---------+---------+---------+ 60 AA M S F I L T F W M I F L M 1 - - - - - - - - - + - - - 13 61 ---------+---------+---------+---------+---------+---------+ 120 GATTCAATAATTGTATTAATATCTTTTTCAATATTTCTATCTGTATGAATATGTGCATTG GAUUCAAUAAUUGUAUUAAUAUCUUUUUCAAUAUUUCUAUCUGUAUGAAUAUGUGCAUUG 61 ---------+---------+---------+---------+---------+---------+ 120 D S I I V L I S F S I F L S V W I C A L 14 - - - - - + - - - - - - - - - + - - - - 34 121 ---------+---------+---------+---------+---------+---------+ 180 ATTATAGCAACAGTATTAACTGTAACAAAAATAAATAATATATATTGTACATGAGATTTT AUUAUAGCAACAGUAUUAACUGUAACAAAAAUAAAUAAUAUAUAUUGUACAUGAGAUUUU 121 ---------+---------+---------+---------+---------+---------+ 180 I I A T V L T V T K I N N I Y C T W D F 35 - - - - - + - - - - - - - - - + - - - - 54 181 ---------+---------+---------+---------+---------+---------+ 240 ATATCATCAAAATTTATAGATACATATTGGTTTGTACTTGGAATGATGTTTATATTGTGT AUAUCAUCAAAAUUUAUAGAUACAUAUUGGUUUGUACUUGGAAUGAUGUUUAUAUUGUGU 181 ---------+---------+---------+---------+---------+---------+ 240 I S S K F I D T Y W F V L G M M F I L C 55 - - - - - + - - - - - - - - - + - - - - 74 241 ---------+---------+---------+---------+---------+---------+ 300 TTATTGTTAAGGTTGTGTTTGTTGTTGTATTTTAGTTGTATAAATTTTGTGAGTTTTGAT UUAUUGUUAAGGUUGUGUUUGUUGUUGUAUUUUAGUUGUAUAAAUUUUGUGAGUUUUGAU 241 ---------+---------+---------+---------+---------+---------+ 300 L L L R L C L L L Y F S C I N F V S F D 75 - - - - - + - - - - - - - - - + - - - - 94 301 ---------+---------+---------+---------+---------+---------+ 360 TTGTGTAAAGTAATAGGTTTTCAGTGATATTGGGTATATTTTTTATTTGGAGAAACCACG UUGUGUAAAGUAAUAGGUUUUCAGUGAUAUUGGGUAUAUUUUUUAUUUGGAGAAACCACG 301 ---------+---------+---------+---------+---------+---------+ 360 L C K V I G F Q W Y W V Y F L F G E T T 95 - - - - - + - - - - - - - - - + - - - - 114 361 ---------+---------+---------+---------+---------+---------+ 420 ATATTTAGTAATTTAATATTAGAAAGTGATTATTTAATAGGAGATTTAAGAATATTACAG AUAUUUAGUAAUUUAAUAUUAGAAAGUGAUUAUUUAAUAGGAGAUUUAAGAAUAUUACAG 361 ---------+---------+---------+---------+---------+---------+ 420 I F S N L I L E S D Y L I G D L R I L Q 115 - - - - - + - - - - - - - - - + - - - - 134 421 ---------+---------+---------+---------+---------+---------+ 480 TGTAACCATGTATTGACATTGTTAAGTTTGGTTATTTATAAATTATGAGTATCTGCAGTA UGUAACCAUGUAUUGACAUUGUUAAGUUUGGUUAUUUAUAAAUUAUGAGUAUCUGCAGUA 421 ---------+---------+---------+---------+---------+---------+ 480 C N H V L T L L S L V I Y K L W V S A V 135 - - - - - + - - - - - - - - - + - - - - 154 481 ---------+---------+---------+---------+------- - - +------ 536 GATGTAATACACTCATTTACAATATCAAGTTTAGGTATAAAAGTAGA G A ACCTGGT GAUGUAAUACACUCAUUUACAAUAUCAAGUUUAGGUAUAAAAGUAGAuuGuAuACCUGGU 481 ---------+---------+---------+---------+---------+---------+ 540 D V I H S F T I S S L G I K V D C I P G 155 - - - - - + - - - - - - - - - + - - - - 174 537 ---+---------+---------+---------+---------+---------+------ 596 AGGTGTAATGAAATAATTTTGTTTGCTACAAATAACGCAACTCTTTACGGACAATGTAGT AGGUGUAAUGAAAUAAUUUUGUUUGCUACAAAUAACGCAACUCUUUACGGACAAUGUAGU 541 ---------+---------+---------+---------+---------+---------+ 600 R C N E I I L F A T N N A T L Y G Q C S 175 - - - - + - - - - - - - - - + - - - - - 195 597 ---+---------+---------+---------+---------+---------+------ 656 GAATTGTGTGGTGTATTACACGGTTTTATGCCTATTGTAATAAATTTTATATAGAAAGGT GAAUUGUGUGGUGUAUUACACGGUUUUAUGCCUAUUGUAAUAAAUUUUAUAUAGAAAGGU 601 ---------+---------+---------+---------+---------+---------+ 660 E L C G V L H G F M P I V I N F I * 196 - - - + - - - - - - - - - + - - - 213 657 ---+---------+---------+---------+- 691 ATATAATCTATAATGAAAGGGGATTTTAAGATTGG AUAUAAUCUAUAAUGAAAGGGGAUUUUAAGAUUGG 661 ---------+---------+---------+----- 695