Gene: Cytochrome b
Species: Trypanosoma brucei
Notes: The 5' ends of edited and preedited mRNAs were mapped by
primer extension to +2 and +1, respectively (A. Estevez and L. Simpson,
unpublished).
1 ---------+---------+---------+-- - - -- - --+ - - 42
DNA GTTAAGAATAATGGTTATAAATTTTATATAAA A G CG G AGA A A
RNA-ed GUUAAGAAUAAUGGUUAUAAAUUUUAUAUAAAuAuGuuuCGuuGuAGAuuuuuAuuAuuu
1 ---------+---------+---------+---------+---------+---------+ 60
AA M F R C R F L L F
1 - - - - - - - - - 9
43 - - ----- + - --------+---------+---------+------ 86
A A AGAAA G G GTCTTTTAATGTCAGGTTGTTTATATAGAATATAT
uuuuuAuuAuuuAGAAAuuuGuGuuGUCUUUUAAUGUCAGGUUGUUUAUAUAGAAUAUAU
61 ---------+---------+---------+---------+---------+---------+ 120
F L L F R N L C C L L M S G C L Y R I Y
10 + - - - - - - - - - + - - - - - - - - - 29
87 ---+---------+---------+---------+---------+---------+------ 146
GGGGTAGGTTTTAGTTTAGGATTTTTTATAGCATTGCAAATAATTTGTGGAGTGTGTTTA
GGGGUAGGUUUUAGUUUAGGAUUUUUUAUAGCAUUGCAAAUAAUUUGUGGAGUGUGUUUA
121 ---------+---------+---------+---------+---------+---------+ 180
G V G F S L G F F I A L Q I I C G V C L
30 + - - - - - - - - - + - - - - - - - - - 49
147 ---+---------+---------+---------+---------+---------+------ 206
GCTTGATTATTTTTTAGTTGTTTTATTTGTTCAAATTGATATTTTGTATTATTTTTATGA
GCUUGAUUAUUUUUUAGUUGUUUUAUUUGUUCAAAUUGAUAUUUUGUAUUAUUUUUAUGA
181 ---------+---------+---------+---------+---------+---------+ 240
A W L F F S C F I C S N W Y F V L F L W
50 + - - - - - - - - - + - - - - - - - - - 69
207 ---+---------+---------+---------+---------+---------+------ 266
GATTTTGATTTGGGTTTTGTGATAAGAAGTGTACATATATGTTTTACATCTTTATTATAT
GAUUUUGAUUUGGGUUUUGUGAUAAGAAGUGUACAUAUAUGUUUUACAUCUUUAUUAUAU
241 ---------+---------+---------+---------+---------+---------+ 300
D F D L G F V I R S V H I C F T S L L Y
70 + - - - - - - - - - + - - - - - - - - - 89
267 ---+---------+---------+---------+---------+---------+------ 326
TTACTATTATATATCCATATATTTAAGTCAATAACGTTAATAATATTGTTTGACACACAT
UUACUAUUAUAUAUCCAUAUAUUUAAGUCAAUAACGUUAAUAAUAUUGUUUGACACACAU
301 ---------+---------+---------+---------+---------+---------+ 360
L L L Y I H I F K S I T L I I L F D T H
90 + - - - - - - - - - + - - - - - - - - - 109
327 ---+---------+---------+---------+---------+---------+------ 386
ATATTAGTATGATTTATAGGTTTTATATTGTTTGTATTTATAATAATAATAGCTTTTATA
AUAUUAGUAUGAUUUAUAGGUUUUAUAUUGUUUGUAUUUAUAAUAAUAAUAGCUUUUAUA
361 ---------+---------+---------+---------+---------+---------+ 420
I L V W F I G F I L F V F I I I I A F I
110 + - - - - - - - - - + - - - - - - - - - 129
387 ---+---------+---------+---------+---------+---------+------ 446
GGATATGTACTGCCTTGTACAATGATGTCATACTGAGGTTTAACGGTGTTTAGTAATATT
GGAUAUGUACUGCCUUGUACAAUGAUGUCAUACUGAGGUUUAACGGUGUUUAGUAAUAUU
421 ---------+---------+---------+---------+---------+---------+ 480
G Y V L P C T M M S Y W G L T V F S N I
130 + - - - - - - - - - + - - - - - - - - - 149
447 ---+---------+---------+---------+---------+---------+------ 506
ATAGCAACAGTACCAATTTTAGGTATATGATTATGTTATTGAATTTGGGGAAGTGAATTT
AUAGCAACAGUACCAAUUUUAGGUAUAUGAUUAUGUUAUUGAAUUUGGGGAAGUGAAUUU
481 ---------+---------+---------+---------+---------+---------+ 540
I A T V P I L G I W L C Y W I W G S E F
150 + - - - - - - - - - + - - - - - - - - - 169
507 ---+---------+---------+---------+---------+---------+------ 566
ATAAACGATTTTACATTATTAAAGTTACATGTATTACATGTGTTATTACCATTTATATTA
AUAAACGAUUUUACAUUAUUAAAGUUACAUGUAUUACAUGUGUUAUUACCAUUUAUAUUA
541 ---------+---------+---------+---------+---------+---------+ 600
I N D F T L L K L H V L H V L L P F I L
170 + - - - - - - - - - + - - - - - - - - - 189
567 ---+---------+---------+---------+---------+---------+------ 626
CTAATAATATTAATTTTACATTTATTTTGTCTACATTATTTTATGAGTTCTGATGCATTT
CUAAUAAUAUUAAUUUUACAUUUAUUUUGUCUACAUUAUUUUAUGAGUUCUGAUGCAUUU
601 ---------+---------+---------+---------+---------+---------+ 660
L I I L I L H L F C L H Y F M S S D A F
190 + - - - - - - - - - + - - - - - - - - - 209
627 ---+---------+---------+---------+---------+---------+------ 686
TGTGATAGGTTTGCATTTTATTGTGAAAGATTAAGTTTTTGTATGTGGTTTTATTTGAGA
UGUGAUAGGUUUGCAUUUUAUUGUGAAAGAUUAAGUUUUUGUAUGUGGUUUUAUUUGAGA
661 ---------+---------+---------+---------+---------+---------+ 720
C D R F A F Y C E R L S F C M W F Y L R
210 + - - - - - - - - - + - - - - - - - - - 229
687 ---+---------+---------+---------+---------+---------+------ 746
GATATGTTTTTAGCATTTTCAATATTATTATGTATGATGTATGTTATATTTATAAATTGG
GAUAUGUUUUUAGCAUUUUCAAUAUUAUUAUGUAUGAUGUAUGUUAUAUUUAUAAAUUGG
721 ---------+---------+---------+---------+---------+---------+ 780
D M F L A F S I L L C M M Y V I F I N W
230 + - - - - - - - - - + - - - - - - - - - 249
747 ---+---------+---------+---------+---------+---------+------ 806
TATTTTGTATTTCATGAGGAATCTTGAGTTATAGTAGATACACTAAAAACATCAGATAAA
UAUUUUGUAUUUCAUGAGGAAUCUUGAGUUAUAGUAGAUACACUAAAAACAUCAGAUAAA
781 ---------+---------+---------+---------+---------+---------+ 840
Y F V F H E E S W V I V D T L K T S D K
250 + - - - - - - - - - + - - - - - - - - - 269
807 ---+---------+---------+---------+---------+---------+------ 866
ATATTACCAGAATGATTTTTTTTGTATTTATTCGGTTTTTTAAAGGCAATCCCAGATAAG
AUAUUACCAGAAUGAUUUUUUUUGUAUUUAUUCGGUUUUUUAAAGGCAAUCCCAGAUAAG
841 ---------+---------+---------+---------+---------+---------+ 900
I L P E W F F L Y L F G F L K A I P D K
270 + - - - - - - - - - + - - - - - - - - - 289
867 ---+---------+---------+---------+---------+---------+------ 926
TTTATGGGTTTGTTTTTAATGGTTATTTTATTATTCTCATTATTTTTATTTATATTGAAT
UUUAUGGGUUUGUUUUUAAUGGUUAUUUUAUUAUUCUCAUUAUUUUUAUUUAUAUUGAAU
901 ---------+---------+---------+---------+---------+---------+ 960
F M G L F L M V I L L F S L F L F I L N
290 + - - - - - - - - - + - - - - - - - - - 309
927 ---+---------+---------+---------+---------+---------+------ 986
TGTATATTATGATTTGTGTATTGTAGAAGTTCATTATTATGATTAACATATTCGTTAATA
UGUAUAUUAUGAUUUGUGUAUUGUAGAAGUUCAUUAUUAUGAUUAACAUAUUCGUUAAUA
961 ---------+---------+---------+---------+---------+---------+ 1020
C I L W F V Y C R S S L L W L T Y S L I
310 + - - - - - - - - - + - - - - - - - - - 329
987 ---+---------+---------+---------+---------+---------+------ 1046
TTATTTTATAGTATATGAATGAGTGGTTTTTTAGCATTATATGTAGTATTAGCATATCCA
UUAUUUUAUAGUAUAUGAAUGAGUGGUUUUUUAGCAUUAUAUGUAGUAUUAGCAUAUCCA
1021 ---------+---------+---------+---------+---------+---------+ 1080
L F Y S I W M S G F L A L Y V V L A Y P
330 + - - - - - - - - - + - - - - - - - - - 349
1047 ---+---------+---------+---------+---------+---------+------ 1106
ATATGAATGGAATTACAATACTGAGTATTATTATTATTTTTGTTGATAGTGTGTAGGTTA
AUAUGAAUGGAAUUACAAUACUGAGUAUUAUUAUUAUUUUUGUUGAUAGUGUGUAGGUUA
1081 ---------+---------+---------+---------+---------+---------+ 1140
I W M E L Q Y W V L L L F L L I V C R L
350 + - - - - - - - - - + - - - - - - - - - 369
1107 ---+-------- 1118
GATTAGTTTAGA
GAUUAGUUUAGA
1141 ---------+-- 1152
D *
370 +