Gene: Cytochrome oxidase subunit 3 Species: Trypanosoma brucei Notes: The 5' ends of edited and preedited mRNAs were mapped by primer extension to +1 (A. Estevez and L. Simpson, unpublished). 1 ---------+---------+------- - - + - - - ------+ - 41 DNA TTATTGAGGATTGTTTAAAATTGAATA A A A A G G CTTTTTG G RNA-ed UUAUUGAGGAUUGUUUAAAAUUGAAUAuAuuAuuAuuuuuuuAuGuuuuuGuuuC GuuGu AA 1 ---------+---------+---------+---------+---------+----- ----+ 60 M F L F R C 1 - - - - - - 6 42 - - - -- - --+---- -- - - - + --- ---- - - + - 71 A A G GG G ATTTTTG GG G G A C ACC GCCA G A G G AuAuuuGuuGGuGuuA GuGGuGuuuuuGuuuuuuuAuCuuuACCuGCCAuuGuuAuuGuG 61 ---------+------ ---+---------+---------+---------+---------+ 120 I F V G V S G V F V F L S L P A I V I V 7 - - - + - - - - - - - - - + - - - - - - 26 72 - -- - - - --+----- - - - ---------- -+ - - 102 A GG A G G GTTTTGGA A G A GTTTGTTTTG AG A G uAuuGGuuAuuuuGuuuGuuG GGAuuuAuuuGuuuAuuGUUUG GuAGuuuuuuAuuuGuu 121 ---------+---------+- --------+---------+--- ------+---------+ 180 Y W L F C L L G F I C L L F G S F L F V 27 - - - + - - - - - - - - - + - - - - - - 46 103 +- - ----+- - - -- - - - - + - - - - 124 GA G GTTTTG A G GG G A G G G G A G A GAuuGuG GuuuuAuuuuuuuuuuuGuuGGuuuuuGuAuuuGuuuGuuGuuGuuAuuGuuA 181 ------- --+---------+---------+---------+---------+---------+ 240 D C G F I F F F V G F C I C L L L L L L 47 - - - + - - - - - - - - - + - - - - - - 66 125 -- - - -+ --- -- - -- - + - --- - - - 147 GA G G GA ACG GG A GA G G A ACG G A C GAuuuGuuuuGuGAuuuuuuACGuGGuuuAuuuGAuuuuuGuGuuuuAuuACGuuGuAuC 241 ---------+---------+---------+---------+---------+---------+ 300 D L F C D F L R G L F D F C V L L R C I 67 - - - + - - - - - - - - - + - - - - - - 86 148 --+ - - - -- - - --+---- - - - --+- ----- 176 CAG A G A GG A G AGTTGAG G A A GGCG GTTTT CAGuAuuGuuuuuuAuGGuuuuuAuGuAG UGAGuuuGuuuuAuuuAuGGCGuuuuuuG UU 301 ---------+---------+--------- +---------+---------+-------- -+ 360 Q Y C F L W F L C S E F V L F M A F F V 87 - - - + - - - - - - - - - + - - - - - - 106 177 - - - +- - - - - - - --+ ------- - -+- 201 G A A GG A G A G G G GAG GCTTTCG G ACC GuAuuAuuuGGuuuAuGuuuAuuuuuGuGuuGuGAGuuuGCUUUCGuuuuuuGuuuACCu 361 ---------+---------+---------+---------+---------+---------+ 420 V L F G L C L F L C C E F A F V F C L P 107 - - - + - - - - - - - - - + - - - - - - 126 202 - - - - - - - - +- - -- - - ---+- --- 224 A A G G G A A G GA A GG G A GGTTA AGA uAuAuGuuuuGuuGuuuAuuAuGuGAuuAuGGuuuuGuuuuuuAuuGG UAuuuuuuAGAu 421 ---------+---------+---------+---------+---------+---------+ 480 Y M F C C L L C D Y G F V F Y W Y F L D 127 - - - + - - - - - - - - - + - - - - - - 146 225 - -- - -+ --- --- ---+- -- -- -- - - +- 251 A AA G GA AAA ACA ATTTG TG AG GG A G AA uuAuuuAAuuuGuuGAuAAAuACAuuuuAUUUGuuUGuuAGuGGuuuAuuuGuuAAuuuu 481 ---------+---------+---------+---------+---------+---------+ 540 L F N L L I N T F Y L F V S G L F V N F 147 - - - + - - - - - - - - - + - - - - - - 166 252 - - ------+- --- - ----+- - - - - -- --+ 280 G G GTTTTTGG AGG G GTTTTG G G A A GA GAG uuuGuuuuGuGUUUUUGGuuuAGGuuuuuuuGuuG UUGuuGuuuuGuAuuAuGAuuGAGu 541 ---------+---------+---------+----- ----+---------+---------+ 600 F V L C F W F R F F C C C C F V L W L S 167 - - - + - - - - - - - - - + - - - - - - 186 281 - - ------ - + -------- -+---------+- - - - 316 G G GTTTTG G G GAAACCAG ATGAGATTGTTTGCA G A A uuGuuGuuuG GuuuuuuGuuuuuGuGAAACCAGuuAUGAGA GUUUGCAuuGuuAuuuAuu 601 ---------+ ---------+---------+---------+- --------+---------+ 660 L L F G F L F L W N Q L W E F A L L F I 187 - - - + - - - - - - - - - + - - - - - - 206 317 --- +-- - ------+- -- - - - - --+ - ---- ----+ 350 ACA AAG G GGTTTTTG GG C A A A GGA A TACA ATTTG ACAuuAAGuuGuGG UGuuuuuGGuuCuAuuuuAuuuuuAuuGGAuuuAuUACAuuuuA UG 661 ---------+---- -----+---------+---------+---------+-------- -+ 720 T L S C G V F G S I L F L L D L L H F M 207 - - - + - - - - - - - - - + - - - - - - 226 351 -- - --- - - - + - - - --- - -- + 370 CA G AGG G G G G A G A GCG G AA G CAuGuuuuuuuAGGuGuuuuGuuGuuGuuuAuuuGuuuuAuGCGuuuGuuuAAuuuuuuG 721 ---------+---------+---------+---------+---------+---------+ 780 H V F L G V L L L F I C F M R L F N F L 227 - - - + - - - - - - - - - + - - - - - - 246 371 - - --- ----+ - - - - - - - - -+-- - --- 396 G A GGA ACACG G G A G G G A A GACA G GAT uGuAuGGAuACACGuuuuGuuuuuuuGuAuuGuGuuuGuuuAuAuuGACAuuuuGuuGAU 781 ---------+---------+---------+---------+---------+---------+ 840 C M D T R F V F L Y C V C L Y W H F V D 247 - - - + - - - - - - - - - + - - - - - - 266 397 ---+ -- - ---- - - +- - - - - - - - - 419 TTAG GA A GCGA G A GA G A G G A G A G UUAGuuuGAuuuuuuuuAuuGCGAuuuGuuuAuuuuGAuGuuuuAuGuGuuAuGuAuuuG 841 ---------+---------+---------+---------+---------+---------+ 900 L V W F F L L R F V Y F D V L C V M Y L 267 - - - + - - - - - - - - - + - - - - - - 286 420 + - - -- - -- - -+------ -- -+- -- - - ----+-- 453 G G G AA A GG G TTTAGTTG GA ATG AA G A GGTAGTTT uGuGuGuAAuuuuAuuGGuGuuuuUUUAGUUGuuGAuuA GuuAAuuGuAuuuGGUAGUUU 901 ---------+---------+---------+--------- +---------+---------+ 960 C V * 287 - - 288 454 -------+-- 463 GTAGGAAGTT GUAGGAAGUU 961 ---------+ 970