Gene: cytochrome c oxidase subunit I Species: Trypanoplasma borreli Notes: 1 --- - - - ---+- ---- ----+----- -- - - + - - 32 DNA ATG G A G GACAG CTCA AATTGATTGA GG G A A C A RNA-ed AUGuuuGuuuuAuuuGuuuuuuuGACAGuuuCUCAuAA GA UGAuuGGuuuGuuAuAuuuuCuA 1 ---------+---------+---------+-------- -+ ---------+---------+--- 63 AA M F V L F V F L T V S H K M I G L L Y F L 1 - - - - - - - - - + - - - - - - - - - + - 21 33 --- ----+- -- - -- -- - + - -- - - --- -+----- - 66 AGC AATTTA GG G GG TA A G A CG G A CTG GGATTTA G UuAGCuuuAA UAuuuGGuuuuGuuGGuUAuAuGuAuuCGuuGuuuAuuC GuuuGGA AuuG 64 ------+--- ------+---------+---------+---------+-- ------- +--- 123 L A L I F G F V G Y M Y S L F I R L E L 22 - - - - - - - - + - - - - - - - - - + - 41 67 -- - +----- ----+ ---------+---------+---------+---------+----- 125 CA A GTTTGG GTTGG GTTTTGTTTGGAGACTATCAATTTTATAATGTTATAATTACGGCT UCAuuAuG UGGuuG UGGuGUUUUGUUUGGAGACUAUCAAUUUUAUAAUGUUAUAAUUACGGCU 124 ------+- ------ --+---------+---------+---------+---------+------ 186 S L C G C G V L F G D Y Q F Y N V I I T A 42 - - - - - - - - + - - - - - - - - - + - - 62 126 ----+---------+---------+---------+---------+---------+---------+- 191 CATGGGCTAATAATGATTTTTGCATTTGTAATGCCTATTATTTTAGGAGGGTTTGCGAATTATTTT CAUGGGCUAAUAAUGAUUUUUGCAUUUGUAAUGCCUAUUAUUUUAGGAGGGUUUGCGAAUUAUUUU 187 ---+---------+---------+---------+---------+---------+---------+-- 252 H G L I M I F A F V M P I I L G G F A N Y F 63 - - - - - - - + - - - - - - - - - + - - - - 84 192 --------+---------+---------+---------+---------+---------+------- 257 ACACCTATGATGTGTGGTTTTCCAGATTTAATCTTTCCTAGATTAAATAATATAAGTTTTTGAATT ACACCUAUGAUGUGUGGUUUUCCAGAUUUAAUCUUUCCUAGAUUAAAUAAUAUAAGUUUUUGAAUU 253 -------+---------+---------+---------+---------+---------+-------- 318 T P M M C G F P D L I F P R L N N I S F W I 85 - - - - - + - - - - - - - - - + - - - - - - 106 258 --+---------+---------+---------+---------+---------+---------+--- 323 TTTTTTTTAGGAGGTGTACTATTATTATGTGGATTTATTTCAGAAGAAGGTATGGGAGTAGGTTGA UUUUUUUUAGGAGGUGUACUAUUAUUAUGUGGAUUUAUUUCAGAAGAAGGUAUGGGAGUAGGUUGA 319 -+---------+---------+---------+---------+---------+---------+---- 384 F F L G G V L L L C G F I S E E G M G V G W 107 - - - + - - - - - - - - - + - - - - - - - - 128 324 ------+---------+---------+---------+---------+---------+--------- 389 ACATTATATCCAACACTAATTTGTTATGATTTTCATTCTAGTTTATCTTGTGATTTTGTAGTATTT ACAUUAUAUCCAACACUAAUUUGUUAUGAUUUUCAUUCUAGUUUAUCUUGUGAUUUUGUAGUAUUU 385 -----+---------+---------+---------+---------+---------+---------+ 450 T L Y P T L I C Y D F H S S L S C D F V V F 129 - + - - - - - - - - - + - - - - - - - - - + 150 390 +---------+---------+---------+---------+---------+---------+----- 455 TCAGTTCATTTTTTAGGTATATCTAGTATTTTAAATTCTTTAAATTTAGTAGGTACACTATTTGTA UCAGUUCAUUUUUUAGGUAUAUCUAGUAUUUUAAAUUCUUUAAAUUUAGUAGGUACACUAUUUGUA 451 ---------+---------+---------+---------+---------+---------+------ 516 S V H F L G I S S I L N S L N L V G T L F V 151 - - - - - - - - - + - - - - - - - - - + - - 172 456 ----+---------+---------+---------+---------+---------+---------+- 521 TGTAGAAGAAAGTATTTTAGTTTTGTATTTTGGGTTTTGTTTATATGGGGATTGTTTTTAACTTGT UGUAGAAGAAAGUAUUUUAGUUUUGUAUUUUGGGUUUUGUUUAUAUGGGGAUUGUUUUUAACUUGU 517 ---+---------+---------+---------+---------+---------+---------+-- 582 C R R K Y F S F V F W V L F I W G L F L T C 173 - - - - - - - + - - - - - - - - - + - - - - 194 522 --------+---------+---------+---------+---------+---------+------- 587 ATTTTATTAATTATCACTTTGCCAATTTTAGCAGGAGGTGTAACAATGATATTTTTAGATAGAAAT AUUUUAUUAAUUAUCACUUUGCCAAUUUUAGCAGGAGGUGUAACAAUGAUAUUUUUAGAUAGAAAU 583 -------+---------+---------+---------+---------+---------+-------- 648 I L L I I T L P I L A G G V T M I F L D R N 195 - - - - - + - - - - - - - - - + - - - - - - 216 588 --+---------+---------+---------+---------+---------+---------+--- 653 TTTAATACTTCTTTTTTTGATATAATTGGAGGGGGGGACCTTATATTATTTCAACATTTATTTTGA UUUAAUACUUCUUUUUUUGAUAUAAUUGGAGGGGGGGACCUUAUAUUAUUUCAACAUUUAUUUUGA 649 -+---------+---------+---------+---------+---------+---------+---- 714 F N T S F F D I I G G G D L I L F Q H L F W 217 - - - + - - - - - - - - - + - - - - - - - - 238 654 ------+---------+---------+---------+---------+---------+--------- 719 TTTTTTGGGCATCCAGAAGTATATATAATAATTTTGCCTATATTTGGATTAGTATCCACGTTTATA UUUUUUGGGCAUCCAGAAGUAUAUAUAAUAAUUUUGCCUAUAUUUGGAUUAGUAUCCACGUUUAUA 715 -----+---------+---------+---------+---------+---------+---------+ 780 F F G H P E V Y I I I L P I F G L V S T F I 239 - + - - - - - - - - - + - - - - - - - - - + 260 720 +---------+---------+---------+---------+---------+---------+----- 785 GATATAATAGGTTTAAGAGGTGTTTTTAGTTTTGTAACTATGATATATTCTATGTTATGTATATGT GAUAUAAUAGGUUUAAGAGGUGUUUUUAGUUUUGUAACUAUGAUAUAUUCUAUGUUAUGUAUAUGU 781 ---------+---------+---------+---------+---------+---------+------ 846 D I I G L R G V F S F V T M I Y S M L C I C 261 - - - - - - - - - + - - - - - - - - - + - - 282 786 ----+---------+---------+---------+---------+---------+---------+- 851 GTTATTGGGTTTTTTGTATGGGCACACCATATGTTTGTTATAGGTATGGATATAGATTCTAGGGCA GUUAUUGGGUUUUUUGUAUGGGCACACCAUAUGUUUGUUAUAGGUAUGGAUAUAGAUUCUAGGGCA 847 ---+---------+---------+---------+---------+---------+---------+-- 912 V I G F F V W A H H M F V I G M D I D S R A 283 - - - - - - - + - - - - - - - - - + - - - - 304 852 --------+---------+---------+---------+---------+---------+------- 917 TATTTTGGAAGTCTATCACTATTGATTGGCCTTCCTACATGTATAAAAATATTTAATTGATTTTAT UAUUUUGGAAGUCUAUCACUAUUGAUUGGCCUUCCUACAUGUAUAAAAAUAUUUAAUUGAUUUUAU 913 -------+---------+---------+---------+---------+---------+-------- 978 Y F G S L S L L I G L P T C I K I F N W F Y 305 - - - - - + - - - - - - - - - + - - - - - - 326 918 --+---------+---------+---------+---------+---------+---------+--- 983 AGTTTTTTGTTTTATGATCTATTGTTGTTAATAGAAGCCTATTTTGTAGTAATTTTTATATTTATG AGUUUUUUGUUUUAUGAUCUAUUGUUGUUAAUAGAAGCCUAUUUUGUAGUAAUUUUUAUAUUUAUG 979 -+---------+---------+---------+---------+---------+---------+---- 1044 S F L F Y D L L L L I E A Y F V V I F I F M 327 - - - + - - - - - - - - - + - - - - - - - - 348 984 ------+---------+---------+---------+---------+---------+--------- 1049 TTTTTATTTGGAGGCATTACAGGTTTATTGTTAGCTAATGTAGGACTAGATGTATTATTACATGAT UUUUUAUUUGGAGGCAUUACAGGUUUAUUGUUAGCUAAUGUAGGACUAGAUGUAUUAUUACAUGAU 1045 -----+---------+---------+---------+---------+---------+---------+ 1110 F L F G G I T G L L L A N V G L D V L L H D 349 - + - - - - - - - - - + - - - - - - - - - + 370 1050 +---------+---------+---------+---------+---------+---------+----- 1115 ACGTATTTTGTAGTTGCACATTTTCATTATGTATTATCTTTAGGCGCGGTTATAGGAGTATTTGGG ACGUAUUUUGUAGUUGCACAUUUUCAUUAUGUAUUAUCUUUAGGCGCGGUUAUAGGAGUAUUUGGG 1111 ---------+---------+---------+---------+---------+---------+------ 1176 T Y F V V A H F H Y V L S L G A V I G V F G 371 - - - - - - - - - + - - - - - - - - - + - - 392 1116 ----+---------+---------+---------+---------+---------+---------+- 1181 GGAGTTTTTCATTTTTGTTGAAAATGAATACCTTTAGAATTTTTTATATTTTTAGTCTATTATAAT GGAGUUUUUCAUUUUUGUUGAAAAUGAAUACCUUUAGAAUUUUUUAUAUUUUUAGUCUAUUAUAAU 1177 ---+---------+---------+---------+---------+---------+---------+-- 1242 G V F H F C W K W I P L E F F I F L V Y Y N 393 - - - - - - - + - - - - - - - - - + - - - - 414 1182 --------+---------+---------+---------+---------+---------+------- 1247 CTTATAGTATTGTTTTTAGGTTCAAACATTCTATTTTACCCTTTACATAGTTTAGGATTATACTCT CUUAUAGUAUUGUUUUUAGGUUCAAACAUUCUAUUUUACCCUUUACAUAGUUUAGGAUUAUACUCU 1243 -------+---------+---------+---------+---------+---------+-------- 1308 L I V L F L G S N I L F Y P L H S L G L Y S 415 - - - - - + - - - - - - - - - + - - - - - - 436 1248 --+---------+---------+--- - --- --+--- ------ +- -------- 1299 TTTCCAAGAAGAATTTCTGATTATCC A ATA TTTTTG TATTTA AG AATTGTTG UUUCCAAGAAGAAUUUCUGAUUAUCCuAuuA AuUUUUUGuUA UAuAGuuuuuuAA UGUUGuu 1309 -+---------+---------+--------- +---------+ ---------+--- ------+ 1370 F P R R I S D Y P I N F L L Y S F L M L F 437 - - - + - - - - - - - - - + - - - - - - - 457 1300 +- - --- - ---+- -- - - - - - -+------ - - 1328 GG G ATA A TGTTG AG G G G G G ATTTTGTG G A UGGuGuA AuuuuuuuAuUG UGuuuAGuuuuGuuuuGuuGuuGuuuGuuuA GUGuGuuAuu 1371 ------- --+--------- +---------+---------+---------+ ---------+ 1430 G V I F L L C L V L F C C C L F S V L L 458 - - + - - - - - - - - - + - - - - - - - 477 1329 -+--------- + - - - - - - - - - + -- - 1353 GTTTTTTGAGA G G G G G A A G G G A AG G G UUUUGAGAuuGuuGuuuuuuuuuGuGuuGuAuAuuuuuGuGuuGuuuAuuuAGUuuuuuuuGu 1431 - --------+---------+---------+---------+---------+---------+---- 1494 F W D C C F F L C C I F L C C L F S F F C 478 - - + - - - - - - - - - + - - - - - - - - 498 1354 - -- -- -+--- -- - - - - - + - - -- ----- + - 1382 A GA CC TAATG TG G A A A A G A G GA GCCCA A A uuuuuuAuuuGAuuuCCuuUAA GuUGuGuAuuAuAuuuAuuGuuAuGuGAuuuuGCCCAuAuuAu 1495 -----+---------+------ ---+---------+---------+---------+--------- 1559 F F I W F P L S C V L Y L L L C D F A H I I 499 - + - - - - - - - - - + - - - - - - - - - + 520 1383 ----- - - + ------ - -- + - - - - - - - - -+- 1411 ATAGA G A G TTTTTG G TG G G G G G A G A G AGA uAUAGAuGuuuuAuuuGuuUUUUUGuGuUGuuuuuuuGuGuuuuGuGuGuAuuuuGuAuGuAGAuu 1560 +---------+---------+---------+---------+---------+---------+----- 1625 I D V L F V F L C C F F V F C V Y F V C R L 521 - - - - - - - - - + - - - - - - - - - + - - 542 1412 - - - ----+---------+---------+-------- 1447 A A G AGGTGTTTTTTGTATTTAAAAATATTTAAAATA AuuAuuuuuuGuuuAGGUGUUUUUUGUAUUUAAAAAUAUUUAAAAUA 1626 ----+---------+---------+---------+---------+-- 1672 L F F V * 543 - - - - 546