Gene: ATPase subunit 6 (Murf4,A6)
Species: Trypanosoma brucei
Notes: There was an extra inserted U residue at nt 541 in the original sequence.
See Notes with the edited sequence for location of 5' ends. 



       1 ---------+---------+---------+-- - -     -          - --   -  39
DNA      AAAAATAAGTATTTTGATATTATTAAAGTAAA A G     A          G GA   A
RNA-ed   AAAAAUAAGUAUUUUGAUAUUAUUAAAGUAAAuAuGuuuuuAuuuuuuuuuuGuGAuuuA
       1 ---------+---------+---------+---------+---------+---------+  60
AA                                        M  F  L  F  F  F  C  D  L   
                                        1 -  -  -  -  -  -  -  -  -     9


      40 +-----  ---   -  +  - - - - -  -  - - - +- - ---  - -    -     68
         TTTTGG  GCG   G  A  A G A G A  A  G G A GA C AGG  A G    A   
         UUUUGGuuGCGuuuGuuAuuAuGuAuGuAuuAuuGuGuAuGAuCuAGGuuAuGuuuuAuu
      61 ---------+---------+---------+---------+---------+---------+  120
         F  W  L  R  L  L  L  C  M  Y  Y  C  V  W  S  R  L  C  F  I   
      10 +  -  -  -  -  -  -  -  -     +  -  -  -  -  -  -  -  -  -     29


      69 - + -    -- --   -- -  -+     --      -  -    -   ----+--   -   93
         G G A    AA TG   AA G  GA     GA      A  A    G   GTTTTGA   G
         GuGuAuuuuAAuUGuuuAAuGuuGAuuuuuGAuuuuuuAuuAuuuuGuuuG UUUGAuuuG
     121 ---------+---------+---------+---------+---------+- --------+  180
         V  Y  F  N  C  L  M  L  I  F  D  F  L  L  F  C  L   F  D  L   
      30 +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -   -  -  -     49


       94 -   -   -  --   - +-------     -  -  + --   - -  -   --   - -   119
          A   G   G  GG   G GTTTTTTG     A  G  G GG   A G  G   AA   A A 
         uAuuuGuuuGuuGGuuuGuG   UUUGuuuuuAuuGuuGuGGuuuAuGuuGuuuAAuuuAuAu
     181 ---------+---------+   ---------+---------+---------+---------+  240
         Y  L  F  V  G  L  C     L  F  L  L  L  W  F  M  L  F  N  L  Y   
      50 +  -  -  -  -  -  -     -  -  -  +  -  -  -  -  -  -  -  -  -     69

     120 +-   ------- -  +---- -  -- --+--------   -+--  --  -    - -  -    158
         AG   AATTTTG A  ATTTG A  AC TATTTGTTTAA   GTTA  TG  G    G A  G  
         AGuuuAAUUUUGuAuuA UUGuAuuACuUAUUUG   AAuuuG UAuuUGuuGuuuuGuAuuGuu
     241 ---------+------- --+---------+---   ------ +---------+---------+  300
         S  L  I  L  Y  Y   C  I  T  Y  L     N  L   Y  L  L  F  C  I  V   
      70 +  -  -  -  -  -   -  -  -  -  +     -  -   -  -  -  -  -  -  -     89


     159      -  + - -  ---     -     -    -      - + --         -     173
              A  G A A  GCA     A     G    G      A G GA         G   
         uuuuuAuuGuAuAuuGCAuuuuuAuuuuuGuuuuGuuuuuuAuGuGAuuuuuuuuuGuuu
     301 ---------+---------+---------+---------+---------+---------+  360
         F  L  L  Y  I  A  F  L  F  L  F  C  F  L  C  D  F  F  L  F   
      90 +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -    109


     174 -- --   - -+-  -- -- ----+-    - --- -        ---+---      -  - -   206
         AA AA   G TAG  GG GA ATTTTG    A GGA G        ATTCTTG      G  G G 
         AAuAAuuuGuUAGuuGGuGAuA    GuuuuAuGGAuGuuuuuuuuAUUC  GuuuuuuGuuGuGu
     361 ---------+---------+--    -------+---------+------  ---+---------+  420
         N  N  L  L  V  G  D  S      F  M  D  V  F  F  I  R    F  L  L  C   
     110 +  -  -  -  -  -  -  -      -  -  +  -  -  -  -  -    -  -  -  -    129


     207      ---+ -     -   -  - - --  -   - +----     ---   --+---   233
              AGAG G     C   G  G G CG  G   G CGACG     GCG   GTTTTG 
         uuuuuAGAGuGuuuuuCuuuGuuGuGuCGuuGuuuGuCGACGuuuuuGCGuuuGUUUUGu
     421 ---------+---------+---------+---------+---------+---------+  480
         F  L  E  C  F  S  L  L  C  R  C  L  S  T  F  L  R  L  F  C   
     130 +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -    149


     234 --   -  - -- +--- ------  +  -- -      --       --    -       258
         AA   A  A CA CCCA TTTTTA  G  GA G      GA       TA    A     
         AAuuuAuuAuCAuCCCAuUUUUUAuuGuuGAuGuuuuuuGAuuuuuuuUAuuuuAuuuuu
     481 ---------+---------+---------+---------+---------+---------+  540
         N  L  L  S  S  H  F  L  L  L  M  F  F  D  F  F  Y  F  I  F   
     150 +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -    169


     259 -            + -- -      -  -  --   -    -   +     - -    -   273
         G            A GG G      G  A  GA   A    A   A     G G    G 
         GuuuuuuuuuuuuAuGGuGuuuuuuGuuAuuGAuuuAuuuuAuuuAuuuuuGuGuuuuGu
     541 ---------+---------+---------+---------+---------+---------+  600
         V  F  F  F  Y  G  V  F  C  Y  W  F  I  L  F  I  F  V  F  C   
     170 +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -    189


     274     -   -  -    --- +     - - ---  ---   -+- --------+- -  -------+  310
             G   A  A    ATG G     A A TTG  GGA   ATT GCCTTTGCCA A  ACTTTTAG
         uuuuGuuuAuuAuuuuAUGuGuuuuuAuAuUUGuuGGAuuuAUUuGCC   GCCAuAuuAC    AG
     601 ---------+---------+---------+---------+--------   -+--------    -+  660
         F  C  L  L  F  Y  V  F  L  Y  L  L  D  L  F  A     A  I  L  Q    
     190 +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -     -  -  -  -        209


     311   -   -      - -- - --    -+-  -- -- ----+      -  -     -  -  335
           A   A      G AA A GA    GCAG  GA AA GGTTA      G  G     G  G
         uuAuuuAuuuuuuGuAAuAuGAuuuuGCAGuuGAuAAuGG  AuuuuuuGuuGuuuuuGuuG
     661 ---------+---------+---------+---------+  ---------+---------+  720
         L  F  I  F  C  N  M  I  L  Q  L  I  M  D    F  L  L  F  L  L   
     210 +  -  -  -  -  -  -  -  -  -  +  -  -  -    -  -  -  -  -  -    229


     336    -   --    - +   --     -- --  -  - -  +  -  ----   ----  +-  361
            G   AG    G A   GA     GA AG  A  A A  G  G  GAAA   GTTG  TG
         uuuGuuuAGuuuuGuAuuuGAuuuuuGAuAGuuAuuAuAuuGuuGuuGAAAuuuG  GuuUG
     721 ---------+---------+---------+---------+---------+-----  ----+  780
         F  V  *     
     230 +  -     231


     362   --------+---------+---------+---------+-  401
           ATTTTGGAGTTATAGAATAAGATCAAATAAGTTAATAATA
         uuA  UUGGAGUUAUAGAAUAAGAUCAAAUAAGUUAAUAAUA
     781 ---  ------+---------+---------+---------+  820