Gene: NADH dehydrogenase 9 (ND9,G2,CR2)
Species: Trypanosoma brucei
Edited/unedited: edited
Notes:  The G at nt 144 is missing in the genomic sequence (M94286).



       1 ---------+---------+---------+  - -  --- - - - -+--- -   -    45
DNA      TTAATATCAACTTAATTTTTTTTATAAACA  A A  ATG G A A TTTTA G   A  
RNA-ed   UUAAUAUCAACUUAAUUUUUUUUAUAAACAuuAuAuuAUGuGuAuAuUUUUAuGuuuAuu
       1 ---------+---------+---------+---------+---------+---------+  60
AA                                            M  C  I  F  L  C  L  F  
       1                                      -  -  -  -  -  -  -  -    8


      46  --   - -     +   --  ---    ----+-   - -  - --- -- +  ---   -  74
          CG   A G     G   AA  TTA    ATTTTG   G G  G AGA GG G  TTG   G
         uCGuuuAuGuuuuuGuuuAAuuUUAuuuuA  UUGuuuGuGuuGuAGAuGGuGuuUUGuuuG
      61 ---------+---------+---------+  ---------+---------+---------+  120
          R  L  C  F  C  L  I  L  F  Y    C  L  C  C  R  W  C  F  V  C  
       9  -  +  -  -  -  -  -  -  -  -    -  +  -  -  -  -  -  -  -  -    28
 

      75     -  --  - -+      -       -  -    -  --         -    --+-  91
             G  GA  G AG      G       A  G    G  AG         G    ATTG
         uuuuGuuGAuuGuAGuuuuuuGuuuuuuuAuuGuuuuGuuAGuuuuuuuuuGuuuuAUUG
     121 ---------+---------+---------+---------+---------+---------+  180
          F  V  D  C  S  F  L  F  F  Y  C  F  V  S  F  F  L  F  Y  C  
      29  -  +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -    48


      92  - -     -      --   - --     +     - -  ---- -- -+-  -  --   114
          A G     A      AA   G GA     G     A A  GTTG GA TTG  A  GA 
         uAuGuuuuuAuuuuuuAAuuuGuGAuuuuuGuuuuuAuAuuGUUGuGAuUUGuuAuuGAu
     181 ---------+---------+---------+---------+---------+---------+  240
          M  F  L  F  F  N  L  W  F  L  F  L  Y  C  C  D  L  L  L  I  
      49  -  +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -    68


     115  --     - --     +     - --    - -  -  --- +    -    -   -    133
          GA     G GG     G     G CG    A G  G  GTA A    A    G   G  
         uGAuuuuuGuGGuuuuuGuuuuuGuCGuuuuAuGuuGuuGUAuAuuuuAuuuuGuuuGuu
     241 ---------+---------+---------+---------+---------+---------+  300
          D  F  C  G  F  C  F  C  R  F  M  L  L  Y  I  L  F  C  L  F  
      69  -  +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -    88


     134    - - -  --   - +    -    - -  -----   -+-      ---  - -     156
            G G G  CG   G G    G    G G  GTTTG   GTA      GGA  G G   
         uuuGuGuGuuCGuuuGuGuuuuGuuuuGuGuuGUUUGuuuGUAuuuuuuGGAuuGuGuuu
     301 ---------+---------+---------+---------+---------+---------+  360
          L  C  V  R  L  C  F  V  L  C  C  L  F  V  F  F  G  L  C  F  
      89  -  +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -   108


     157  ---    +---  -     - -- --+     -  -  -------+--- -   -----+-    191
          ATG    ATTG  G     G TA GCG     G  G  GGAACGCTGAA G   TGATTTG  
         uA GuuuuA  GuuGuuuuuGuUAuGCGuuuuuGuuGuuGGAACGC GAAuGuuuUGAUUUGuu
     361 -- ------  -+---------+---------+---------+--- ------+---------+  420
          S   F  S    C  F  C  Y  A  F  L  L  L  E  R   E  C  F  D  L  F  
     109  -   +  -    -  -  -  -  -  -  -  -  +  -  -   -  -  -  -  -  -   128


     192  --    --    -  -- -+ -- -    ------   +   -  --  ------      +   220
          GG    TA    G  GG AA GA A    ACATCG   A   G  GA  GTTTTG      G 
         uGGuuuuUAuuuuGuuGGuAAuGAuAuuuuACAUCGuuuAuuuGuuGAuuG    GuuuuuuGu
     421 ---------+---------+---------+---------+---------+-    --------+  480
          G  F  Y  F  V  G  N  D  I  L  H  R  L  F  V  D  W      F  F  V  
     129  -  +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -      -  -  -   148


     221  --         -  ---- -  -+---  -   --   -   - -  +  -    - -   243
          GG         G  GAAG G  ATCCA  A   GG   G   G A  G  A    G G 
         uGGuuuuuuuuuGuuGAAGuGuuAUCCAuuAuuuGGuuuGuuuGuAuuGuuAuuuuGuGu
     481 ---------+---------+---------+---------+---------+---------+  540
          G  F  F  L  L  K  C  Y  P  L  F  G  L  F  V  L  L  F  C  V  
     149  -  +     -  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -   168


     244 -  ---- -+--------- + - ---   ---- -  +     -  -  --- ----+--  -  283
         G  GTTG GGAGGAGATAG A G ACG   ACAA G  A     G  G  GCA ACCTTAA  T
         GuuG  GuGGAGGAGAUAGuAuGuACGuuuACAAuGuuAuuuuuGuuGuuGCAuACC  AAuuU
     541 ----  -----+---------+---------+---------+---------+-----  ----+  600
          L    V  E  E  I  V  C  T  F  T  M  L  F  L  L  L  H  T    N  F  
     169  -    +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -    -  -   188


     284 ---   ---+  -    - -------+------ ---+---------+--  322
         TTA   GTCA  A    A ATTTAATTTCACCG TGTAATTCTAAATTTC
         UUAuuuG CAuuAuuuuAuA  UAAUUUCACCGuUGUAAUUCUAAAUUUC
     601 ------- --+---------  +---------+---------+-------  647
          Y  L   H  Y  F  I    *
     189  -  +   -  -  -  -       194