Guide RNA/mRNA alignment for T. brucei NADH dehydrogenase 3 (ND3,G5,CR5)


       1  UCAAAAAAUC CUCGCCUUUU UACUUUAGUU UGUUAUCAuu AuuuuuAuAu

      51  uuGuuuuUGA UAuuGuGGuu uAUUAuuuuA uuuAuAGGuu uuuuuuuAuG
                                                          |||||:
                                                          AAAUAU

     101  uuuuuuAuGu uuuuuAuuGC AuuuuuuuGA uuGuuuuCGu uGuuGuuuGu
          |:|:||||:| :|||||::|| ||||:|:||| ||||||||X| XXX|
          AGAGAAUAUA GAAAAUGGCG UAAAGAGACU AACAAAAGAA UAUA gCR5[116]

     151  GGuuuuCGuG uGGuUUGuAu GAuAuGAAuU CACGuuuGGU GuuuuAuACA
                                                 |:|| :|||:|:|||
                                                 AUCA UAUAGUGUGU

     201  uuGGAuuuAU GuuuuGuuAG uUGuUUGuuu uuuGuAuuGu uAAAuuCCAu
          |::||||||: :||||:|||| |||||||||| X|XX
          AGUCUAAAUG UAAAAUAAUC AACAAACAAA UAUA gCR5[75]
 
     251  UAuuuGuGuU UUGuuGuuuG uuuuuGUGAu AGuGuuGuuu uAuuuuuGuu
 
     301  AUGGuuuuuu GuUUUUGuGG uuuuuGuuuu uuGuuGuAuG uAuAGGAuuU
                          ::|:: ||:|::|:|| :::|:|||:: ||||:|:||:
                          GUAUU AAGAGUAGAA GGUAGCAUGU AUAUUCUAAG

     351  GuGuGGuAuu uuuGGGAUCA CGuAuAUUUG UGUGGUGUAA UUUUAuuuuG
          :||||||||| |X|:X:X
          UACACCAUAA AUAUAUG gCR5[29]

     401  uuuAuGAUGu uuUUUGUUGU AUUAUACAUA UUAUAUUAAU AAAUAUAUAA
 
     451  AAUAAUAAAA UACUA