10-12-98. Corrected sequence files from Paul Sloof were substituted for several of the original files.
There were a few single nucleotide errors in the original files.
ID MPRA111 XX AC L10845 XX DE Mitochondrial kinetoplast maxicircle DNA XX OS Herpetomonas mariadeanei XX RN [1] RA Landweber L., Gilbert W. RT RNA editing as a novel source of genetic variation RL Nature 363: 179-182(1993) RX Medline: 93247644 XX FT source 1..464 FT /organism="Herpetomonas mariadeanei" FT /strain="ATCC 30708" FT /note="maxicircle DNA fragment" FT /note="the sequence in GenBank contains FT multiple errors (see MPRA114); the authors FT have been notified and a corrected version FT will be available from GenBank in the FT near future; the sequence shown is taken FT from [1] and is the correct version" FT /citation=[1] XX FT cryptogene 28..407 FT /gene="Cox3" FT /note="pre mRNA is edited into mRNA for FT cox3" FT /citation=[1] FT /mRNA="MPRA114" XX SQ 1..464 1 TGTAGACAGA TAAACTAAAC CATTAAAAGG CGGAGGGGGA TTTTGGGGAA 51 CGCCTGCTTC GGATTTGAGG AGGATTGGAG AAGGGAGGGG AGGGTTGGGG 101 GGGAGTTTAA GGGAAGGAAC GGGAGAGAGA CGGGCAGAGG GAGAATTTGG 151 AGGGGGACAG CTGTTTGGGG AGAGGGGAAG CTTTTGGACC CAATTTTGGG 201 GGGTTGAAGG GAGGATAGAG AAGGAAAAAC AATTTTGGAG GGGTGAAGGG 251 TTTTGGAGAG ATTTGGAGAG GGGGGAGGAG AGAACATGGG AGAAGGAGGA 301 CAGATTTGGG GAGGCAGGAT TTGAAACAAC CCAGATGGGG AGAGAGCGAG 351 GGGAGGAACA CGTGGAGGGG AGACAGGATT GGGGAGCGAG AGAGGGTTGA 401 GAGGGAAAGG GGGGGAATTT AGGAGTGTAG TGAGTAGTTA TAACAACAAT 451 ACTAAAACAA AACA // ID MPRA114 XX AC L10847 XX DE Edited Cox3 mRNA XX OS Herpetomonas mariadeanei XX RN [1] RA Landweber L., Gilbert W. RT RNA editing as a novel source of genetic variation RL Nature 363: 179-182(1993) RX Medline: 93247644 XX XX FT RNA 1..988 FT /organism="Herpetomonas mariadeanei" FT /strain="ATCC 30708" FT /note="edited RNA sequence corresponds FT to coordinates 1..464 of the maxicircle FT DNA fragment in MPRA111" FT /note="the GenBank sequence FT contains multiple reading frameshifts FT and differs from this sequence at FT numerous positions; the authors have FT been notified and a corrected version FT will be available from GenBank in the FT near future; the sequence shown is taken FT from [1] and is the correct version" FT /citation=[1] XX FT eddomain 28..987 FT /ed_type="insertion/deletion RNA FT editing" FT /note="editing of the pre mRNA creates FT the cox3 mRNA" FT /citation=[1] XX FT CDS 28..896 FT /product="COX3" FT /note="sequence does not contain an in- FT frame translational start codon; FT the A at position 28 aligns with the A FT of the inferred AUG startcodon of cox3 FT mRNA from T. brucei in MPRA029" FT /codon_start=33 FT /citation=[1] XX FT polyA_site 988 FT /note="precise polyadenylation site is FT unknown" FT /note="5 non-encoded Us inserted at FT 983..987 are 5' of poly(A) tail" XX SQ 1..988 1 UGUAGACAGA UAAACUAAAC CAUUAAAAuu uGuuuuuGuu uCGuGuuAuu 51 uuuGuuGGuG uGA****GuG GuGuuuuuuu AuuuuuAuCu uuGCCUGC** 95 CGuuuGuAUU *GuAuuuuuu GuuGuuAuuu GGAUUGGuuu uAuGAuuuuA 144 uGuuuuGGuA GuuuuGuuuu uGuuGAuuuG GGuuUUGuuu uuuuuuuuGu 194 uuuGGGuuuG uuuuGuAuuu uGuuUUUAAu GuGuGAuuuA uuuuGuGAuA 244 uuuuuCGuGG uAuuuuuGAu uuuGuuAGuu uuAuuCGuuG uuuGCAGuAu 294 uGuuuuuuGu GAuuuGuuAu uA***GuGAG uuuGuuuuGu uuGuGACAuu 341 uuuuGCUGU* *GGuuuuuGG uuAuGuuuuA uuuuuGuGuu GuGAAuuuGC 389 UUUUGuuuuu uGuuuACCCA uuA****Guu uuuGuuGuuu GuuGGUUGAA 435 uuuGGuuuuu GuuuuuAuuG GuuuuAuuUA GAuuuGuuuA AuuuGuuGAu 485 AAAuACAuuu uuAUU**Guu uGuuAGuGGu uuGuuuuUGA AuuuuGuuuu 533 GuuuuuGUUU UGGuuuAGAu uuuuuuGuAU **GGuuAuuu GuuuuuuAuG 581 GuuGGGuuuG uuAuuuGGuu uuAuGuuuuu AuGuAAuCA* GuuGuGAGAA 630 uuuGuGAuuu uGuuuGuuAC AuGuA***Gu uGuGGuuuAu uuGGuuCuAu 677 uuuGuuuuGu AUU*GAuAuu uuACAuuuuA CCCAuGuuuu uuuA*GGuGu 725 uuuuuuGAuG uuuAuuuGuA uuuGuCGAuG uuuuGuuuuu uuGuGuAuGG 775 AuACACGuuu UGuuuuuuuG uAuGuuGuuG uuuuGuAuuG ACAuuuuGuu 825 GAUUGuGuuu GGuuuuuuuu AuuGCGAuuu GuuuAuuuuG AuGuuuuGGU 875 UGuuAuGuAu uuGuGuGuuu AAuuAuuuuu uuuuuGuuGG uuuuuuGuuu 925 GuuGuGAuuA UU*AguuuGA GUGUAGUGAG UAGUUAUAAC AACAAUACUA 974 AAACAAAACu uuuuA // ID MPRA115 XX AC L10846 XX DE Mitochondrial kinetoplast maxicircle DNA XX OS Herpetomonas megaseliae XX RN [1] RA Landweber L., Gilbert W. RT RNA editing as a source of genetic variation RL Nature 363: 179-182 (1993) RX Medline: 93247644 XX FT source 1..413 FT /organism="Herpetomonas megaseliae" FT /strain="strain: ATCC 30209" FT /note="maxicircle DNA fragment" FT /note="the sequence in GenBank FT contains multiple errors (see FT MPRA119) ; the authors have FT been notified and a corrected version FT will be available from GenBank in the FT near future; the sequence shown is taken FT from [1] and is the correct version" FT /citation=[1] XX FT cryptogene 10..372 FT /gene="Cox3" FT /note="pre-mRNA is edited into mRNA for FT Cox3" FT /citation=[1] FT /mRNA="MPRA119" XX SQ 1..413 1 AGATATAAAA GGCGGAGGGG AAGTGGGGAC ACCTGCTCGG ATTTGAAGAA 51 GAGGTGATGA GGGGAGGGGA TAGGTGAGGG GGAATTTTTG AGGGAAGGAG 101 CGGGAGAGAA ACGGGCAGAG AGGGGAGGAA CTTGGGAGCA ACTGGAGGGA 151 GGGGGAGGCT TTTGGGCCCA GGGGAAGGAA GGGAGGATTG GAGAAGGAAA 201 AACAAGTTTG AGGGAGAAAT TTTGGGGAGA GGTGAGGAGG GGGAAGGGGG 251 GAACCAAGGA GAAGCAGGGA CCGATTTTGG GGGGGCAGGA GAGGCAACTC 301 AGGAGGGGGA GAGCGGAAAG AGGAACACGT GGAGGGGAGA CAGGAGGGGG 351 GCGAGAGAGA GGGGAGGTTG AAAGGGGGAA ATTTAAGTGT GTGTAGAATA 401 TAGAAAATAA AAA // ID MPRA120 XX AC L10851 XX DE Mitochondrial kinetoplast maxicircle DNA XX OS Herpetomonas samuelpessoai XX RN [1] RA Landweber L., Gilbert W. RT RNA editing as a source of genetic variation RL Nature 363: 179-182 (1993) RX Medline: 93247644 XX FT source 1..226 FT /organism="Herpetomonas samuelpessoai" FT /strain="ATCC 30252" FT /note="maxicircle DNA fragment" FT /note="the sequence in GenBank FT contains multiple errors (see MPRA123); FT the authors have been notified and a FT corrected version will soon be available FT from GenBank; the sequence shown is FT taken from [1]and is the corrected FT version" FT /citation=[1] XX FT cryptogene <1..182 FT /gene="Cox3" FT /product="COX3" FT /note="encodes 3'terminal region of the FT pre mRNA which is edited into mRNA for FT cox3" FT /citation=[1] FT /mRNA="MPRA123" XX SQ 1..226 1 GGAGGAAGAG AAGGAAAAAC AATAGAGGGG GAAAGGGGAG AGGGGGGAGG 51 GGGAAGGGAG GAATCCAGGG AGAAGCGGAG ACAGATTTTG GGGGGGCAGG 101 ATTGAGGCAA CTCAGGAGGG GGAGGGCGAA AGGAGGAACT CGGGAGGGGA 151 GACAGGAGGG GGGCGAGAGA GAGGGGAGGG AGAAGGAGGG GATGAGAAAAA 201 AGGTGTAGTG TTGTGGAAAG AATAAA // ID MPRA124 XX AC L10849 XX DE Mitochondrial kinetoplast maxicircle DNA XX OS Herpetomonas muscarum muscarum XX RN [1] RA Landweber L., Gilbert W. RT RNA editing as a source of genetic variation RL Nature 363: 179-182 (1993) RX Medline: 93247644 XX FT source 1..411 FT /organism="Herpetomonas muscarum FT muscarum" FT /strain="ATCC 30260" FT /note="maxicircle DNA fragment" FT /note="the sequence in GenBank FT contains multiple errors (see MPRA127); FT the authors have been notified and a FT corrected version will be available from FT GenBank in the near future; FT the sequence shown is taken FT from [1] and is the correct version" FT /citation=[1] XX FT cryptogene 16..379 FT /gene="Cox3" FT /note="pre-mRNA is edited into mRNA for FT Cox3" FT /citation=[1] FT /mRNA="MPRA127" XX SQ 1..411 1 CTAAATAGAT ATAAAAGGCG GAGGGGAAGT GGGGACACCT GCTCGGATTT 51 GAAGAAGAGG TGATGAGGGG AGGGGATAGG TGAGGGGGAA TTTTTGAGGG 101 AAGGAGCGGG AGAGAAACGG GCAGAGAGGG GAGGAACTTG GGAGCAACTG 151 GGGGAGAGGG GAGGCTTTTG GGCCCAGGGG AAGGAAGGGA GGATTGGAGA 201 AGGAAAAACA AATTTGAGGG AGAAATTTTT GGGGAGAGGT GAGGAGGGGG 251 AAGGGGGGAA CCAAGGAGAA GCAGGGACCG ATTTTGGGGG GGCAGGAGAG 301 GCAACTCAGG AGGGGGAGAG CGGAAAGAGG AACACGTGGA GGGGAGACAG 351 GAGGGGGGCG AGAGAGAGGG GAGGTTGAAA GGGGGAAATT TAAGTGTGTG 401 TAGAATATAG A // ID MPRA119 XX AC L10848 XX DE Edited Cox3 mRNA XX OS Herpetomonas megaseliae XX RN [1] RA Landweber L., Gilbert W. RT RNA editing as a novel source of genetic variation RL Nature 363: 179-182(1993) RX Medline: 93247644 XX FT source 1..987 FT /organism="Herpetomonas megaseliae" FT /strain="strain: ATCC 30209" FT /note="edited RNA sequence corresponds FT to coordinates <1..413 of the maxicircle FT DNA fragment in MPRA115" FT /note="the GenBank sequence FT contains multiple reading frameshifts FT and differs from this sequence at FT numerous positions; the authors have FT been notified and a corrected version FT will be available from GenBank in the FT near future; the sequence shown is taken FT from [1] and is the correct version" FT /citation=[1] XX FT eddomain 25..956 FT /ed_type="insertion/deletion RNA FT editing" FT /note="editing of the pre mRNA creates FT the Cox3 mRNA" FT /citation=[1] XX FT CDS 32..905 FT /product="COX3" FT /note="sequence does not contain an in- FT frame translational start codon; FT the A at position 32 aligns with the A FT of the inferred AUG startcodon of cox3 FT mRNA from T. brucei in MPRA029" FT /codon_start=42 FT /citation=[1] XX FT polyA_site 983..987 FT /note="precise polyadenylation site is FT unknown" XX SQ 1..987 1 UAAAAAAUAA ACUAAAUAGA UAUAAuuuuA uAuuuuuuuu GuuuuuGuuu 51 CGuGuuAuuu uuGuuGGuGu AAGUGGuGuu uuuGuuuuuu uAuCuuuACC 101 UGCCGuuGuu AUU*GuuuAu uAuGuuAuAu GuuuAuGuG* GuuuuAUGAu 149 uuGuuGuuuu GGuAGuuuuG uuuuuGuuGA UAuGuGuuuU GuAuuuuuuu 199 uuuuuGGuuu GuuGuuuuGu AuuuuAUU** *GuuAuuGuG uGAuuuAuuu 246 GuuGAuuuuu uGCGuGGuAu uuuuGAuuuu uGuAAuuuuu uACGuGuuuu 296 GCAGuAuuGu uuuAuGuGGu uuGuuuuuAG uGAACUUGuG uuGuuuAuGu 346 CAuuuuuuAC UGuGGuuuuu GGuuAuGuuA uuuuuuuGuG uuGuGAGuuu 396 GCUUUUGuuu uuuGuuuGCC CAuGuuGuuu uGuuGuuuAu uAGuuGAuuA 446 uGGuuuuGuu uuuuAuuGGu uuuuuAU*GG AuuuGuuuAA uuuGuuGAuA 495 AAuACAuuuu uAuuGUUUGu uAGuGGuuuA uuuuGuAAuu uuuuuuuAUU 545 UUGuGuuuGG uuuAGAuuuu uuGuuGuuUG uAuuuuuGuG uuAuGGuGuG 595 GuAuuuuAuu uGGuuuuuuG uuuuuGuGGA A*CCAAuuGu GAGAAuuuGC 644 AuuGuuGuuu GuuACCGuuA ****GuuGuG GuGuuuuuGG uuCuAuuuuG 690 uuuGuuAuuG AuuuGuuGCA uuuuACUCAu GuuuuGuuAG GuGuuuuuuu 740 GuuGuuuAuu GuuuuuAuGC GuuuGuuuAA uuuuuuAuGu AuGGAuACAC 790 GuuuUGuuuu uuuGuAuGuu GuuGuuuuGu AuuGACAuuu uGuuGAuuGu 840 GuuuGGuuuu uuuuGuuGCG AuuuGuuuAu uuuGAuGuAu uGuGuuGuuu 890 GuAuuuGuGU *GuuuAAuuu uuuuuuuuuu AuuuuuGuuG GuuuuuuGuu 939 GuuuuAAuuu uuAuuuuUUU AAGUGUGUGU AGAAUAUAGA AAAUAAAAA // ID MPRA123 XX AC L10852 XX DE Edited Cox3 mRNA XX OS Herpetomonas samuelpessoai XX RN [1] RA Landweber L., Gilbert W. RT RNA editing as a novel source of genetic variation RL Nature 363: 179-182(1993) RX Medline: 93247644 XX FT source 1..971 FT /organism="Herpetomonas samuelpessoai" FT /strain="ATCC 30252" FT /note="442-972 of the edited RNA FT sequence correspond to coordinates FT 1..226 of the maxicircle DNA fragment FT in MPRA120" FT /note="the sequence in GenBank FT contains multiple reading frameshifts FT and differs from this sequence at FT numerous positions;the authors have been FT notified and a corrected version will be FT available from GenBank in the near FT future; the sequence shown is taken FT from [1] and is the correct version" FT /citation=[1] XX FT eddomain <443..946 FT /ed_type="insertion/deletion RNA FT editing" FT /note="the 5'border of the eddomain is FT unknown, because genomic sequences in FT the corresponding region are not FT available" FT /note="editing of the pre mRNA creates FT the Cox3 mRNA" FT /citation=[1] XX FT CDS 34..900 FT /product="COX3" FT /codon_start=34 FT /citation=[1] XX FT polyA_site 971 FT /note="the poly(A) tail contains FT inserted Us at multiple positions" XX SQ 1..971 1 UCAAAUUUUA AUUUGUUUUA UUAUAUAUAA UUUAUGUUUU UGUUUCGUGU 51 UAUUUUUGUU GGUGUAAGUG GUGUUUUUGU UUUUUUGUCU UUACCCGCCG 101 UUGUUAUUUG UUAUUAUGUU GUAUGUUUAU GUGGUUUUAU GAUUUGUUGU 151 UUUGGUAGUU UUUUGUUUGU UGAUAUGUGU UUUGUUUUUU UUUUGGUUUG 201 UUUAUUGUUU UGUAUAUUGU UGUUGUUUUG UGAUGUUUUU GUUGAUUUUU 251 UGCGUGGUAU UUUUGAUUUU UUGACAUUUA UUCGUUGUUU ACAGUAUUGU 301 UUUAUUUGAU UUGUUAUUAG UGAACUUGUA UUGUUUUUAA CAUUUUUUAC 351 UGUGGUUUUU GGUUAUUGUA UUUUUUUAUG UUGUGAGUUU GCUUUUGUUU 401 UUGUUUUACC UAUGUUGUUU UGUUGUUUAU UAGUUGAUUA UGGuuuuGuu 451 uuuuAuuGGu uuuuuAuAGA uuuGuuuAAu uuGuuGAuAA AuACAuuuuu 501 AuUAuuuGuu AGuGGuuuGu uuuGuAAuuu uuuAuuuuuu uGuGuuuGGu 551 uuAGAuuuuu uGuuGuuuGu GuuuuuGuGu uAuGGuGuGG uAuuuuAuuu 601 GGuuuuuuGu uuuuAuGGAA *CCAGuuGuG AGAAuuuGCG uuGuuAuuuG 650 uuACAuGuA* ***GuuGuGG uGuuuuuGGu uCuAuuuuGu uuGuuAUUGA 696 uuuGuuGCAu uuuACUCAuG uuGuuuuAGG uGuuuuuuuG uuGuuuAuuG 746 uGuuuuGuCG uuuAuuuAAu uuuuuGuGuA uGGAuACUCG uuuuGuuuuu 796 uuGuAuGuuG uuGuGuuuuA uuGACAuuuu GuuGAuuGuG uuuGGuuuuu 846 uuuGuuGCGA uuuGuuuAuu uuGAuGuuuu AuGuuGuGuG uAuuuGuGuG 896 uuuAGAuuAu uGuuuGuuuu uuAuuGGuGu uG*GAuuGAu AuAAuuAAuu 945 uuGGUGUAGU GUUGUGGAAA GAAUAAA // ID MPRA127 XX AC L10850 XX DE Edited Cox3 mRNA XX OS Herpetomonas muscarum muscarum (strain: ATCC 30260) XX RN [1] RA Landweber L., Gilbert W. RT RNA editing as a novel source of genetic variation RL Nature 363: 179-182(1993) RX Medline: 93247644 XX FT source 1..981 FT /organism="Herpetomonas muscarum FT muscarum" FT /strain="ATCC 30260" FT /note="edited RNA sequence corresponds FT to coordinates <1..411 of the maxicircle FT DNA fragment in MPRA124" FT /note="the sequence in GenBank FT contains multiple reading frameshifts FT and differs from this sequence at FT numerous positions; the authors have FT been notified and a corrected version is FT available from GenBank in the near FT future; the sequence shown is taken FT from [1] and is the correct version" FT /citation=[1] XX FT eddomain 25..957 FT /ed_type="insertion/deletion RNA FT editing" FT /note="editing of the pre mRNA creates FT the Cox3 mRNA" FT /citation=[1] XX FT CDS 34..907 FT /product="COX3" FT /note="sequence does not contain an in- FT frame translational start codon; FT the A at position 34 aligns with the A FT of the inferred AUG startcodon of cox3 FT mRNA from T. brucei in MPRA029" FT /codon_start=44 FT /citation=[1] XX FT polyA_site 981 FT /note="precise polyadenylation site is FT unknown" FT /note="the poly(A) tail contains FT inserted Us at multiple positions" XX SQ 1..981 1 UAAAAAAUAA ACUAAAUAGA UAUAAuuuuA uuuAuuuuuu uuGuuuuuGu 51 uuCGuGuuAu uuuuGuuGGu GuAAGUGGuG uuuuuGuuuu uuuAuCuuuA 101 CCUGCCGuuu GuAUU*Guuu AuuAuGuuAu AuGuuuAuGu G*GuuuuAUG 149 AuuuGuuGuu uuGGuAGuuu uGuuuuuGuu GAUAuGuGuu uUGuAuuuuu 199 uuuuuuuGGu uuGuuGuuuu GuAuuuuAUU ***GuuAuuG uGuGAuuuAu 246 uuGuuGAuuu uuuGCGuGGu AuuuuuGAuu uuuGuAAuuu uuuACGuGuu 296 uuGCAGuAuu GuuuuAuGuG GuuuGuuuuu AGuGAACUUG uGuuGuuuAu 346 GuCAuuuuuu ACUGuGGuuu uuGGuuAuGu uAuuuuuuuG uGuuGuGAGu 396 uuGCUUUUGu uuuuuGuuuG CCCAuGuuGu uuuGuuGuuu AuuAGuuGAu 446 uAuGGuuuuG uuuuuuAuuG GuuuuuuAU* GGAuuuGuuu AAuuuGuuGA 495 uAAAuACAuu uuuAuuAUUU GuuAGuGGuu uAuuuuGuAA uuuuuuuuuA 545 UUUU*GuGuu uGGuuuAGAu uuuuuGuuGu uUGuAuuuuu GuGuuAuGGu 594 GuGGuAuuuu AuuuGGuuuu uuGuuuuuGu GGAA*CCAAu uGuGAGAAuu 643 uGCAuuGuuG uuuGuuACCG uuA****Guu GuGGuGuuuu uGGuuCuAuu 689 uuGuuuGuuA uuGAuuuGuu GCAuuuuACU CAuGuuuuGu uAGGuGuuuu 739 uuuGuuGuuu AuuGuuuuuA uGCGuuuGuu uAAuuuuuuA uGuAuGGAuA 789 CACGuuuUGu uuuuuuGuAu GuuGuuGuuu uGuAuuGACA uuuuGuuGAu 839 uGuGuuuGGu uuuuuuuGuu GCGAuuuGuu uAuuuuGAuG uAuuGuGuuG 889 uuuGuAuuuG uGU*GuuuAA uuuuuuuuuu uuuuAuuuuu GuuGGuuuuu 938 uGuuGuuuuA AuuuuuAuuu uUUUAAGUGU GUGUAGAAUA UAGA //