LOCUS CfMRP1 771 bp DNA 23-MAY-2000
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|195571978|
COMMENT VNTDBDATE|195566408|
COMMENT LSOWNER|
COMMENT VNTNAME|CfMRP1|
COMMENT VNTAUTHORNAME|Isolde|
FEATURES Location/Qualifiers
CDS 1..768
/vntifkey="4"
/label=cfp29orf
BASE COUNT 180 a 250 c 231 g 110 t
ORIGIN
1 atgttccgtt tcgtctgcaa cacggcgcgt gtgacggcga tggcggcgcg cctcgtccgc
61 ttccagtcca gctccgtcgt cggcgagtcg gctgcggcag ctcgctcaaa caacaacagc
121 aacaacaatc gtcgcaattg ggtctctacg atgcagctgc cgcgcttcga aatccacgac
181 gtgcgagaca cggcggcgca gggcagcatg acccgtgtcg ccgtcgatgg caagcagctc
241 ctcgtctcgc agttcccgca gctcggacct cgcaaggccg acccgaacga caccacccca
301 cagttcgacc gcgaccgccg cgtctcgctg cgcttccgcc acatggacct cgccgctctg
361 gtgtgtgtgg tggagggcca ccagccaagt caccacatgg cgaacagcgc ctacgagctg
421 gagtttgaaa agacgccgag tggctacgtg ctgaaggggc aggtgcagcg cagcccgtcg
481 caggtgaagg aggagtggag tgtgcgcttt gagaaccagt tcgccgtgac acttgagcac
541 tttctgcaag gggcactgac ggagagcttc ggctttgcgg agcaccgcca cgccatggag
601 gcgcaggcgg cgcagaagga caacaccagc ggcaacgcca acaacaataa caacaacaac
661 agcaaccaaa accgccgtcg caacaacaac aaccgcaatc gccggaacaa caagaacaac
721 atcgctgagg agagtgagaa gcaggccgcc cctgcagctg agagcagcta a
//
LOCUS LmAP1 1539 bp DNA 22-JUN-2003
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|305921826|
COMMENT VNTDBDATE|306084026|
COMMENT LSOWNER|
COMMENT VNTNAME|LmAP1|
COMMENT VNTAUTHORNAME|Larry|
FEATURES Location/Qualifiers
sig_peptide 1..60
/vntifkey="94"
/label=Mito\signal
CDS 1..1539
/vntifkey="4"
/label=Lm\MRP-AP1\ORF
BASE COUNT 311 a 460 c 497 g 271 t
ORIGIN
1 atgctgcact cacatcgact gacgctgccg cttccgctga tgcggagcgc ctgcgggaga
61 cactcattgc agtctacccg caaccgcggt gcgttccacc cgactctcgc cgctgctgct
121 ctttgtgtat cccatcgcta ccggagcagc actggcccga ctatcagcga cacccgtgcc
181 ctcggaccgc aagtggcgtt tagtagcaag acggtgaaac tgaagtacga ggaggtgtgg
241 cagctgtgga atgaaggcaa cctcttctcg ctgcaggtag cgcagatgcg ggactttctg
301 gccgacgcgg gcatcgctgt cgatccgacg gcaaagaagg cggcggtagt gcgacgtatg
361 gaggagtacc tgcacagcaa agacagcgcc gagcagcacg gcggcaccgc tgctatcgcg
421 ggagctgctc gaggtgccgg caaggagagc gagcagaact acggcaactg ggctggcgca
481 ggcgtgacgc agccggagaa gctgctggat ttggcccagg cgggcttcta tcaaggaacg
541 gcaaacatgg tacccaaggc atttcagctg ctcacgacgg gcagctgtgc cgaggccgtg
601 gtcagtcgcg tgaacacctc cgccttcccg ggattccctg ccaacacaga atgctacacc
661 ctctcctcct cggatgcggc cggggcccta cagacacgtt acagcaaagt gcttcagtgg
721 tgtctgctaa acatgaacaa cctccgcatg gatggcgagc ttaccgtgga ggttggaaaa
781 ctgctgctca cccccgcggc gatgcggtac ggagaggctg tcgtgtccgc ctacacgctg
841 cagcagcgcc tccagctgac gaagccgtac acatggatcg ccgcgatgcc ggagagcgcc
901 attccccttg tggaggcgtt cttgaaggaa cgtgggttcc agcccgtcag taagaacgcg
961 cgcctcacct atgaggccgg tatcaagcgc gccaaggaca agctggaggt ggtgctgaac
1021 gagcagataa aggtggaggg ggtgtatggg gagtgggtgg atgtgcagac agccttctgc
1081 acctctgtgg agaagccaga ctgccgcatt ctgctgcgct cgcgcccagc cgtcagcgca
1141 caggatcgcg agacgtacac ccgcatccct gtgattgagc tcgccgatga cgacgtgaac
1201 gatgtgctgc cgccggaaaa cggccagctt gtctacctgt ccgagaacga gacgcgtcac
1261 ttcgagcggc tgaacgacaa gggcatcgcc attgttgtgc gagagacgaa gcggcagccg
1321 ctcattgtgc tgcgggacga ggaagaggat ctgcgactgg agtaccagct tagtgtcacc
1381 atccccgcca gcgctggcag ccactccatg gacgttcgtg cggttggctt ggaggtgctg
1441 gccctctccg atgagctgtc aactcttctg aaggagccct tcaacgaggc gtacgggtgc
1501 gcgccagcgc tggacaccgg tagcgttgcc gcgactgca
//
LOCUS LC-\6a\\Lm 1764 bp DNA 2-APR-2003
LOCUS TbMRP1 1083 bp DNA INV 7-AUG-2002
DEFINITION Trypanosoma brucei guide RNA binding protein precursor (gBP21) gene, nuclear gene encoding mitochondrial protein, complete cds.
ACCESSION U61382
SOURCE Trypanosoma brucei.
ORGANISM Trypanosoma brucei
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Trypanosoma.
REFERENCE 1 (bases 1 to 1083)
AUTHORS Koller,J., Muller,U.F., Schmid,B., Missel,A., Kruft,V., Stuart,K.
and Goringer,H.U.
TITLE Trypanosoma brucei gBP21. An arginine-rich mitochondrial protein
that binds to guide RNA with high affinity
JOURNAL J. Biol. Chem. 272 (6), 3749-3757 (1997)
MEDLINE 97166233
REFERENCE 2 (bases 1 to 1083)
AUTHORS Koeller,J. and Goeringer,H.U.
TITLE Direct Submission
JOURNAL Submitted (20-JUN-1996) Genzentrum Muenchen, Am Klopferspitz 18A,
Martinsried 82152, Germany
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT ORIGDB|GenBank
COMMENT VNTDBDATE|274376962|
COMMENT LSOWNER|
COMMENT VNTNAME|TbMRP1|
FEATURES Location/Qualifiers
source 1..1083
/organism="Trypanosoma brucei"
/strain="IsTaR 1.7"
/db_xref="taxon:5691"
/vntifkey="98"
5'UTR 1..152
/vntifkey="52"
/label=5'UTR_1
gene 153..773
/gene="gBP21"
/vntifkey="60"
CDS 153..773
/gene="gBP21"
/codon_start=1
/product="gBP21 precursor"
/protein_id="AAC47460.1"
/db_xref="GI:1853995"
/vntifkey="4"
/label=CDS(gBP21)_1
/note="guide RNA binding protein"
mat_peptide 210..770
/gene="gBP21"
/product="gBP21"
/vntifkey="84"
/label=Mat_Peptide(gBP21)_1
/note="guide RNA binding protein"
BASE COUNT 256 a 227 c 319 g 281 t
ORIGIN
1 gaagaaccac tcttcactgc gtaagagagg ggaagaaggg ggatacagta agctaaggga
61 accgtccata tagggtgcga ggtgcgtttt tgtttccttt ttggtctttc ttgtgatttt
121 cccttgtttt tttattctga cacagaaaag ccatgattcg actcgcatgc ctgcgtggac
181 cggccatgcg ctcagcctgg tctcgtggcg cttctacttt ttccggcgtt cagtcactgc
241 ccaaatttga aattcacgac gtgcgggatg accctgcgct cggaacaatg acgcgtgttg
301 ccgttgatgg gaagctgctt ctcatttctc agtacccaca actgggccca cgcaaagtgg
361 atccaaatga tttaagtcct cagtttgatg cggaccgtcg catttccgta aggctgcgtc
421 atgtagacct tgcgtatctt gtcggcgtat gtaaggagcg ggtgccacgt catcgcatgg
481 aaacaaaggc gtatacgctc gattttgaga agtctgcaca ggggtatcac cttcacggga
541 aggtgcatcg cgtggcctcg cagcggatgg aggactggtc tgttaaattt gataaccatt
601 tcgccgtgac gttggagcac tttttggaga gtgcattgga cgagagcttc gggtttcgtc
661 agcactatgc cacgcgggcc gcagagggag gggagaaaat tgcagcgaca tcttcagcgg
721 agggaggcgc aaggcggaag cgatctgtaa gtgacacatc gcgataccat taacgatgtg
781 aaggaagtgg gtgtgtaaat ggacgaatga aaaggaaagg aagggaagag aaagaagaag
841 gaggaaaagg gaaaggttga gggatgaggt cgtacgtatg tgtttgtatt tttgtgtagg
901 atagacaaca gatgtgttgt tggaaggaat tgagtaccaa gatgtttggt gcaatgcaag
961 tgagcaccca ccgtctattt gtttggttta gtggtgctgg gttgaacccg gctttggaac
1021 ttcttgcgtc ttccttccgg catccgactt ttccccccaa ccctttaatc tccttcaaga
1081 aag
//
LOCUS TbMRP2 582 bp DNA 23-MAY-2000
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|195570368|
COMMENT VNTDBDATE|195566408|
COMMENT LSOWNER|
COMMENT VNTNAME|TbMRP2|
COMMENT VNTAUTHORNAME|Isolde|
BASE COUNT 162 a 112 c 165 g 143 t
ORIGIN
1 tattgcgagt acttcatcgt gatacatttg ttgtccttga ttaccatcgc caggcacgta
61 tgttgacaga agaaggtaat aaggcagagc gtgttgtttc tgtgatgttg ccagcggttt
121 acaccgcacg ttttctggct gtgctggagg ggcgttcaga aaaggtggaa gttcactcac
181 gttatactaa cgccaccttc acaccgaatc ctgcagcacc atacacattt acgctcaagt
241 gcacatcaac gaggcccgcc caacaaaagc aacaggtagc gggtgaagaa ggcgatgaga
301 catttgagtg gactgtagag tttgatgtgg cagaatctct tatgttgcag cgattcctca
361 cacaagctct gcattacaac accggcttcg ctcgcacatc tgtgtaggat aatcttgttg
421 gaacgtgatg aaaaaaaggg aggataaaga gaggaggatg tcgggcgtgt cgggataacg
481 ggtgtgaatg tcagcgtcat gttcatttat gacaagtagg ataagaggag tgggcacgaa
541 agaagtttat tggtggaaca ggggaaggga atgttgtcaa aa
//
LOCUS TbRBP16 1142 bp DNA 27-OCT-2003
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|315077774|
COMMENT VNTDBDATE|317570583|
COMMENT LSOWNER|
COMMENT VNTNAME|TbRBP16|
COMMENT VNTAUTHORNAME|Sigfried|
BASE COUNT 302 a 224 c 324 g 292 t
ORIGIN
1 ggtacgtcag tttgtccacg tggatcgttt catccttgca agttagtagg aaaagagaag
61 accgataggt caccatcacc cacatacacg cacacgtaag aactattaag taacacctta
121 cagatgattc gcgcttccat agttaagcgc atggctccat gcaccctctt tctcaacaag
181 ggtaaggtga tatcgtggat gtctggacgt ggttttggtt ttattgaaga cgacgcagac
241 aagaagcaac actttgtgca tttctcagct cttcaaacgg aaacgggggg ctttcgtgca
301 ctaactgtcg gacaggaagt tgagttcgag gttgcttcgc aggatggccg cacgcgtgcc
361 gagaatgtta cttctcctgg aggagccaaa cttccgtcag ggccgaggcc accagaggga
421 gcaggacgtg gtcgcggctt cggtggcggc cgagggggaa gggattttgg tggtgatcgt
481 aactcaggca ggggacgtaa tgacaaccaa caaggtggcc agcaccagag cttcagcgat
541 gacttttaga tgctaaagtg agctgcggtc gtcgatgttc ggtgagggtg gttggcggca
601 agtgctcttg gtttttctgc agtttttgcc agtggttaag cggaggggaa aaaagttctt
661 attcgcttta aaggagaacg agaagatgat ttttgtattg aagtgaacaa tataaaggta
721 gacaaagggg aacgaatgca catttaactg gtacaagggg ttcaaccaat actggtcaag
781 tcgctgttga tgggctagaa gagcatcgta aagacataag aaaaagtaac gaacaggccc
841 gggggcgtga gaatattgct cagtgcgaag tccgttattt gtcagtgttc caccgataca
901 tctgtgtttc actaaaacta agccagggca cttttgccaa gttctcacac acatgttaat
961 gagggtatat aggtgggaaa ggacgagaga ataagttcaa ccttagtaaa actcttccct
1021 gcacaatctt tcctcatggg ttagagagtc taaggaaagg agtgatgaat agtaatgtta
1081 cgtgcgttcc ttccactgtt gaggtgttta gggtgcaggt cgtctttttt tgagcgtgtc
1141 tt
//
LOCUS TbREAP1 1679 bp DNA INV 22-JUL-2000
DEFINITION Trypanosoma brucei RNA-editing-associated protein 1 (REAP-1) gene, complete cds.
ACCESSION AF159444
SOURCE Trypanosoma brucei.
ORGANISM Trypanosoma brucei
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Trypanosoma.
REFERENCE 1 (bases 1 to 1679)
AUTHORS Madison-Antenucci,S., Sabatini,R.S., Pollard,V.W. and Hajduk,S.L.
TITLE Kinetoplastid RNA-editing-associated protein 1 (REAP-1): a novel
editing complex protein with repetitive domains
JOURNAL EMBO J. 17 (21), 6368-6376 (1998)
MEDLINE 99016056
REFERENCE 2 (bases 1 to 1679)
AUTHORS Madison-Antenucci,S., Sabatini,R.S. and Hajduk,S.L.
TITLE Direct Submission
JOURNAL Submitted (15-JUN-1999) Biochemistry & Molecular Genetics, Univ. of
Alabama at Birmingham, 1918 University Blvd., Birmingham, Al 35222,
USA
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT ORIGDB|GenBank
COMMENT VNTDATE|201017186|
COMMENT VNTDBDATE|201017186|
COMMENT LSOWNER|
COMMENT VNTNAME|TbREAP1|
COMMENT VNTAUTHORNAME|Larry|
FEATURES Location/Qualifiers
source 1..1679
/organism="Trypanosoma brucei"
/strain="TREU 667"
/db_xref="taxon:5691"
/vntifkey="98"
gene 150..1406
/gene="REAP-1"
/vntifkey="60"
CDS 150..1406
/gene="REAP-1"
/codon_start=1
/product="RNA-editing-associated protein 1"
/protein_id="AAD45351.1"
/db_xref="GI:5566260"
/vntifkey="4"
/label=CDS(REAP-1)_1
BASE COUNT 489 a 379 c 482 g 329 t
ORIGIN
1 aaaaaagctg atagagggga gaataacgcc ccaagagggc gcgtcgtgca agttcctctc
61 gtcgtggcgg ctcacgaacc acccgactgg ttgccagtag ccgattcgct cctgccgata
121 ggccatcaag cgccccgaaa cgtcttccga tgggcagcgg taggactggt gggctgctgc
181 cacgtctaag aatatcgtca acaccacaca tacccgtccg cacgcagcaa tggatccctt
241 caaactcagc aaaaccagcg acggcggaat gccaaaaaaa catatcgcca cgaggtccgg
301 caaccacgca gtcatcgggc agctcacgaa ggttaaacat gtatcaaagg gtgccactat
361 cacgacaatg cgactctttt ccgaggaaac caacaactgt ggaggaaaaa ccgaagcccc
421 ctcagccatt gttcagtcgg gttccgagat gtgcggcgga tattccagat catcggaagc
481 cctctccacg acacgatgta cagtcaagaa ggccgtacgt gccgcagtca ggacgtgagg
541 taccgaaagc gcataagaca ccactctcca gggcatccag ttcgccgaaa tacaacagtg
601 cccggaggag gtacgtgcag gacaaacaag ccaacgaaac atctactatc agcggaaggc
661 aacgagttcc tgtgagtgca gtagatgtag gaagcaggga aaaggctaac gttagcgaaa
721 ggcaacgagt tcctgtaagt gcagtagatg taggaagcag ggaaaaggct aacgtcagcg
781 aaaggcaacg agttcctgtg agtgcagtag atgtaggaag cagggagaag gctaacgtca
841 gcgaaaggca acgagttcct gtaagtgcag tagatgtagg aagcagggag aaggctaacg
901 tcagcgaaag gcaacgagtt cctgtaagtg cagtagatgt aggaagcagg gagaaggcta
961 acgtcagcga aaggcaacga gttcctgtga gtgcagtaga tgtaggaagc agggagaagg
1021 ctaacgtcag cgaaaggcaa cgagttcctg taagtgcagt agatgtagga agcagggaga
1081 aggctaacgt cagcgaaagg caacgagttc ctgtaagtgc agtagatgta ggaaataagg
1141 agcaagaaga cgggcgagtc accgcaattt cttcggactc gagaggcgca ttaagtcaga
1201 caaaggcgat ggagacacaa aaagtcgtcg atccgttgtt aacaaaagat ataatttccc
1261 acgacgcggc tggtcgtccc aaacataaat ctcttaatgg tggtttagtg ataccacagg
1321 tggaggggat taagtcatta ctgctttttg atatcaaacc accgaaactg agcgagactg
1381 gcgctgttgc cgccactgtc ggttgagagc gtatgtgttc cattacatct tggtacgtgt
1441 cttccaagtg tagcgtttgt gtgtaacctt tgcattcagt ttggcgcaga gcagttcagt
1501 tcttcatcac caaggcaaat taatttttgg tgacagttgg cagtgagtct ggaaaggggg
1561 aggagtgatg gaaaatctcg tggaacctcc cacgatagta ccaaatgaga agttgaaatt
1621 tattttttgg atacggtggg cagtccttcc gccgcttcaa cgcagtgtgc gtcatcatg
//
LOCUS TbmHel61 1976 bp DNA INV 13-JUN-1999
DEFINITION Trypanosoma brucei mitochondrial DEAD box protein (mHel61) mRNA, nuclear gene encoding mitochondrial protein, complete cds.
ACCESSION U86382
NID g2367401
SOURCE Trypanosoma brucei.
ORGANISM Trypanosoma brucei
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Trypanosoma.
REFERENCE 1 (bases 1 to 1976)
AUTHORS Missel,A., Souza,A.E., Norskau,G. and Goringer,H.U.
TITLE Disruption of a gene encoding a novel mitochondrial DEAD-box
protein in Trypanosoma brucei affects edited mRNAs
JOURNAL Mol. Cell. Biol. 17 (9), 4895-4903 (1997)
MEDLINE 97415570
REFERENCE 2 (bases 1 to 1976)
AUTHORS Missel,A. and Goeringer,H.U.
TITLE Direct Submission
JOURNAL Submitted (22-JAN-1997) Gene Centre, LMU Munich, Am Klopferspitz
18A, Martinsried 82152, Germany
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT ORIGDB|GenBank
COMMENT VNTDBDATE|161521659|
COMMENT LSOWNER|
COMMENT VNTNAME|TbmHel61|
FEATURES Location/Qualifiers
source 1..1976
/organism="Trypanosoma brucei"
/strain="IsTaR 1"
/db_xref="taxon:5691"
/vntifkey="98"
gene 1..1976
/gene="mHel61"
/vntifkey="60"
CDS 30..1670
/gene="mHel61"
/codon_start=1
/product="mitochondrial DEAD box protein"
/protein_id="AAB69639.1"
/db_xref="PID:g2367402"
/db_xref="GI:2367402"
/vntifkey="4"
/label=CDS(mHel61)_1
/note="mHel61p"
polyA_site 1976
/gene="mHel61"
/vntifkey="26"
/label=PolyA_Site(mHel61)_1
BASE COUNT 454 a 456 c 550 g 516 t
ORIGIN
1 tttctctagc tagcatacgg cacataagca tgagggccct gcgttgtgtt aggaggggtg
61 tttatcgcca gtcagtacga ctctgttatt ttatgtcgct ggagtgttca ctacgtccaa
121 tcacaggtgc ctccgcacga ttactgtgcc gatttactgc tccgacttgg cccagaaaaa
181 atgaggtgga ggaaggggat gtggggacga cagagtccac ttcgcaagat gtgcggtcaa
241 tatttcgtag taacatcgaa acacactccg aagtatcgct cgaatcctca gcaagtgcag
301 ctttgccacc caaaactgcg gcgttggatg tgtctgttct cgacagtaag ggtaacgcgg
361 tcccagtgaa tcctgttaag ctcttttctg atctcgacaa tctacctgat tggctgtcga
421 agggactcca gtcgtccgga ttttcatgta ccacccccat tcaaagctat actattccag
481 tccttgacga gggtcacgat atgatcggcc tggctcctac aggttcgggg aaaactgtag
541 ccttcgccgt tcccgcccta aaaaagtttc agtggagtcc gaacggttca ccaaggatag
601 tggttctcgc accaacaagg gagctagttc aacaaactgc gaaagtgttc catcagttga
661 gttcggggaa agttcgtgtg tgcgaacggt acggtggtgc cccacgtgaa gcgcaggccc
721 gtcggttgca caatggttgc gatgttctcg tggcgtgccc aggtcggttg aaggacttct
781 tgcagaacgg cgacgtgatc tttgatgaag tgtcgttttt ggtcttcgat gaggctgatc
841 gtctactgga catggggttc aaggtccaat tagacgacat tctgggttac ttttcgagcc
901 accgccctgc tcaaacgatg atgtggtccg ctacctggcc cccagttgtg gagcaactgg
961 cccaagagta tctctcacag aatcgctacg taatccggtc tggaaccgcc ggaaccggac
1021 ttcaggtcaa cgagaatatt aagcagcaca ttttctttgc tgatgccccc gaagagcgcg
1081 tgaaaacact tgtttctctc attaaggagg ggaaaattga cgagaatacc gctaagatga
1141 tgatatttgt cgagcgtcaa actgacacag agaatgcagc ctacgcgctg gcccgtatgt
1201 tggggattca tagcagatgc attggagtgg tgcacggcgg gatgcaacag cggcagaggg
1261 atcatataat gggcatattc aaggaaggac ggattcggat acttgtagcc actgacgtgg
1321 cctctcgtgg acttgacttc ccggatgtaa cttgcgttgt taacctcata gcccccaaga
1381 acattgacag ctactgccac cgcattggtc ggaccggaag ggctggtcgc accggtgagt
1441 cctttacctt tattgggcgt tcggatggat ctctggcgaa ggacttgata aattacctgg
1501 aaaaatgtgg tatggacgtc cctcagcggt tagtggagtt tgctgaagag cacgcccaag
1561 gggaggagat aaagcgtatg aaacgaccgt ggcgcggtag gcagcagcgt gaggggagga
1621 gccagtcgcg gggtggtcgt gagccggcac ctcgtgacag tggttggtag ttcgtgcgca
1681 gttttgttgc tgtcaggact tgtggtgact gacatgtttc tgtcatttct actttagcac
1741 attagtttca catagtgatc ctggcatatg atggaccttc tttcctcgtc actggtgcgt
1801 gaaccccttt tcggtgtgag gccgtacctt ttgttcgttt tttcacgtgt gttatttcct
1861 agagcttcac atctggtgat aggctcacgt ggcgttgtag ttaaattctt taagaaacct
1921 gcgagaggta tttctaaaat agtacaacac gatggaaaaa tgttgaaata aatctt
//
LOCUS TbREL1(BSW 1820 bp DNA 12-AUG-2002
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|221681337|
COMMENT VNTDBDATE|274811452|
COMMENT LSOWNER|
COMMENT VNTNAME|TbREL1(BSW)|
COMMENT VNTAUTHORNAME|Larry|
FEATURES Location/Qualifiers
CDS 248..1651
/vntifkey="4"
/label=RNA\ligase
BASE COUNT 470 a 398 c 478 g 474 t
ORIGIN
1 gaattcggca cgagctcgtg ccgggcgagc cagcacgcgg acacacaaat aaatattgag
61 gagaagtgtg acggaaggtc gaatatttct ttcttctcca ttcctttccc attccaccag
121 atttgttttt gtgtaagggt gtactttatc tcaagttaca cacgacgctt agctgcgtca
181 ctgtaatttt acccaagtgg tgctgtggga aacgaaaagg gaaggaacgt agcggaacga
241 aaaagagatg caactccaaa ggttgggtgc tccactactt aaaaggcttg ggggatgcat
301 acgccaatca acggcgccaa ttatgccatg tgttgttgtt agtggctcgg gtgttttttt
361 gactcccgtg cgtacttata tgccgctccc caatgatcaa agtgacttct caccgtacat
421 cgagattgat ttgccaagtg aaagccgcat ccaatcactg cataagagcg gacttgcggc
481 acaggagtgg gttgcatgtg aaaaagtgca tgggacaaac tttggtatct acttaattaa
541 ccagggagac cacgaggttg tgaggtttgc aaagcgtagt ggcatcatgg acccaaatga
601 gaatttcttt ggttaccaca tccttatcga cgagttcaca gcacaaattc gtattctaaa
661 tgacctattg aaacaaaaat atggcctgag ccgtgttggg cgtttggtgc tcaatggaga
721 actgtttggt gcgaagtata agcacccact cgttccaaag agtgagaagt ggtgtacgct
781 gccaaacggg aagaagttcc ctatcgccgg tgttcaaata cagagggaac cctttccaca
841 atatagtcca gagctccatt tctttgcatt tgacattaag tacagtgtga gtggcgccga
901 agaggacttc gtgctgcttg gttacgacga gttcgtcgag ttttcttcca aagtgcctaa
961 cctgttatac gcgcgggctc ttgttcgtgg gacgttggat gagtgtttag cgtttgatgt
1021 ggagaatttc atgacaccgc tgcccgcgtt gcttggctta ggtaattacc cccttgaggg
1081 gaatttggca gagggtgtgg tcattcgtca tgtacgtcgt ggggatccgg cggtagagaa
1141 gcacaacgtc tcgactataa tcaaactccg ttgctccagt ttcatggagt tgaagcaccc
1201 cggtaagcaa aaggaactga aggagacatt tatcgacacg gtacgctccg gagctctgcg
1261 gcgggtgcga gggaatgtga ccgttatctc agactccatg ttgcctcagg tggaggcagc
1321 ggccaatgat ctgttactaa acaatgtaag cgatggcagg ttgagcaatg tgctatcgaa
1381 gattggtcgt gaacctctgc tgtctgggga ggtatcgcag gttgatgtgg cgcttatgct
1441 tgctaaggac gcactgaaag actttctcaa ggaggtagat agtttggtgt tgaacacaac
1501 ccttgctttt cgcaagttgc taatcaccaa tgtctacttc gagtctaagc ggttagtgga
1561 gcaaaagtgg aaggaactca tgcaggaaga ggcagccgcg cagtcagagg ctattccacc
1621 actttcaccg gctgccccca caaagggcga atgatactgc aaattgttca attcgtggta
1681 tcctgcgagt gctcatatgc ctccttccct actgcttttc aagatgacgt ctacatccta
1741 atcattgcgt gcggtagtga ttcactacgc gtcacacaaa cacatctttt ttgcataagg
1801 gtaaaaaaaa aaaaaaaaaa
//
LOCUS TbRET1 2931 bp DNA 27-OCT-2003
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|303240570|
COMMENT VNTDBDATE|317570671|
COMMENT LSOWNER|
COMMENT VNTNAME|TbRET1|
COMMENT VNTAUTHORNAME|verdi|
BASE COUNT 709 a 701 c 874 g 647 t
ORIGIN
1 atggtaagta agtaccaccg cttgcttcag caggggctac gtgaggaaga agaaggagtc
61 actgaacgaa atatggtggc aggcggtgaa cagcggcacg ggcacgtgga tgacgacaat
121 gcggaagggg atgctgattt ttatgaccag aaagatgaac ggcgagcgaa aatgtggaat
181 cctaaacatg agtctgcgaa tgtttccgcg ggcgggaagc aaaataggtc ggtgagggat
241 tgcctccccg gttcccttcc tcccgtagcc aatacgagca ctgacgcggc ggtcaggttt
301 gatagggaac gaaaaaatgc gggtcacggg gttgatattt cgtgtgtcga aggcgacggt
361 gcgcaaatgg gtacgtacgt ctccaccggc cgtagtgacg caaaagcagg gggaggaagt
421 agcgctatag gcgtcactgc cgatgatgag agtgatggga atttggacac ggacggtagc
481 gacgcttctg agggcgatga ggttgagtcg acaaccgacg ctgatgtgta tggggaggac
541 gataccactg aagggcctcg tggtggtgtg cggttgtatt cttgcgatgc ctgtccgcat
601 gctgtgttca caactcatgc agcgttgctt gcccacgctg aggagcacca tgcggatcta
661 ttaccagatc atgcccgttt gcgtcgtatc gcacaaaaac ttaatccagt gtggaaccgc
721 gctctaaatg cccgtcgtaa caccattaca tcgtggggga agaaaatatt ccacgtggcc
781 gcgcaacgtg atgcggggga gtcgaagatg caggaggctc atcgtgcccg ggcacaactg
841 gaatgtgttg tgcgccgctg gcatgataaa gcacgtgtct ttatatttgg aagctctgtg
901 gcgatgggcg tgtgggacgg cacagcagat attgattttg ccgtcgttga tgttgatgca
961 atggagcgtg gaagttggcc accgttggag aagaacgctg tgcgttccat cacagagcta
1021 ctacgccggg tggggttttc atttgtaaat ttggagccaa ttagccacgc tagagtgcca
1081 attattaaac atcatgcttc gtcaccaatc cttaccgtcg caagaagaga cgcagaagac
1141 gttgtagctc gaagcattcg ctttattttg aatggccctg ccacgcgcga ggatcggttg
1201 ctactggaag ggagcgtacg cgacgctgtg ggccccactg gggtgcaaca ggtgtggtgg
1261 aaccgcacct ccgacatgat gtcagccaca ctcgaaagta ctaccgctgc cgttagggca
1321 gcaatgtgca gcccggcact tgcctcggcg tcactgcgca caaaggtaca gccggcgcat
1381 gatgaatgca ggccagagtt gtataatatt gacttcgatc tcagcttccg cgcatttggc
1441 atacgcaatt caactcttct acggaaatac ttacttagtc acccgtgcgc tcgaccagga
1501 gccattgtac ttaaagattg gagcaagaca agtggtgtga ataactccgt taacggttac
1561 tttactagtt atgcaatcaa cataatgtgg atatattacc ttgttcagaa gggttatgtg
1621 ccgtacgtgg atcctcttga aattcctgaa tcactcgtaa attataccga ttttgacccc
1681 aggtacaccc cgatgataga cccagagatt acgaacacag agcgggagga gctgtacaaa
1741 gcagccggcg acatgcttgt ggggttcttc tatttttact catttgaatt cgactggggg
1801 cataacgtaa tttcccttaa ccggccggga ataacaacga agaggatgct agggtggcac
1861 gttgaggacg ttgtaccggt tgcttccacc tcagtgagca gtggtggtgg aggtagcaat
1921 gtgaagcgac accctacaag gtacgagctt tgtatcgagg atccctatga agaaaactta
1981 aatttgggcc gacacatcgg agtaacgaag tcgttgcgtg tgcggacgga actctaccgc
2041 ggtctcttat ccttattgaa agagggggag acaaggtcgt gcgtcttcgc cgcagcagat
2101 tcatcaggca cgccggcggc tgggggtaag cagtcggccg ctctaccagc tcgagcactg
2161 ttcaaactga tggccttaac aactcaggct atatcagaat caaggcgtct cccacaaagt
2221 aatagtgaca atagcggtcg cattgctaac ggtgataatg aatcccttac ggaggtcggc
2281 ggcggccaca gggttgaagg cgctggtgtc gatccagctt cctgcgcagg ggcgtcgctt
2341 tcctccttcg gtgagccacc gattggagtt catgagaaaa cgcttgaaag catatttgtt
2401 gagaaggccc ctatggagtt tcagttggta cgaaaggtat ggaactggca ccaactgatc
2461 catcggctcg ggtacaaaat acaccgaggt cacgtgatgc cacggcgtga agttggggta
2521 cgttgcaccg cccggcgcga tgcggaagaa acaacaacag aactggcttc gggcgttgac
2581 acaactaaga gcctgagacc tgggcgaggt cttacagaca ccatgctgcg agacctgagc
2641 cgcggctaca tgacgctcac accggaatgg gttgcttggt cagcgccatg ggtaagccaa
2701 cacttgcgcg gatacagccg cttaacgaca gtgcgttccg cagtggccga tgaaacccca
2761 cccgccctgg cgacggttcc gtctgtcgtg aaaccaccga ctggagaggc ggttatgggt
2821 gcgatgagga ccacccgccg aaatgctgca cctgctcgta gggtggagct gctgaagtta
2881 tggctttggc gcggcatcag caaggttact ccattcaaga gccctcgttg a
//
LOCUS TbRET2 1464 bp DNA INV 30-MAR-2003
DEFINITION Trypanosoma brucei RNA editing complex protein MP57 (MP57) gene, complete cds; nuclear gene for mitochondrial product.
ACCESSION AY228173
VERSION AY228173.1 GI:29293909
SOURCE Trypanosoma brucei.
ORGANISM Trypanosoma brucei
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Trypanosoma.
REFERENCE 1 (bases 1 to 1464)
AUTHORS Panigrahi,A.K., Schnaufer,A., Ernst,N.L., Wang,B., Carmean,N.,
Salavati,R. and Stuart,K.
TITLE Identification of novel components of Trypanosoma brucei editosomes
JOURNAL RNA 9 (4), 484-492 (2003)
REFERENCE 2 (bases 1 to 1464)
AUTHORS Ernst,N.L., Panicucci,B., Igo,R.P. Jr., Panigrahi,A.K. and
Stuart,K.
TITLE TbMP57 is a 3' terminal uridylyl transferase (TUTase) and an
integral component of the RNA editing complex in Trypanosoma brucei
JOURNAL Unpublished (2003)
REFERENCE 3 (bases 1 to 1464)
AUTHORS Panigrahi,A.K., Ernst,N.L. and Stuart,K.
TITLE Direct Submission
JOURNAL Submitted (30-JAN-2003) Seattle Biomedical Research Institute, 4
Nickerson St, Seattle, WA 98109, USA
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT ORIGDB|GenBank
COMMENT VNTDATE|298476837|
COMMENT VNTDBDATE|298476837|
COMMENT LSOWNER|
COMMENT VNTNAME|TbRET2|
COMMENT VNTAUTHORNAME|Larry|
FEATURES Location/Qualifiers
source 1..1464
/organism="Trypanosoma brucei"
/db_xref="taxon:5691"
/vntifkey="98"
gene <1..>1464
/gene="MP57"
/vntifkey="60"
mRNA <1..>1464
/gene="MP57"
/product="RNA editing complex protein MP57"
/vntifkey="54"
/label=MP57
CDS 1..1464
/gene="MP57"
/codon_start=1
/product="RNA editing complex protein MP57"
/protein_id="AAO63567.1"
/db_xref="GI:29293910"
/vntifkey="4"
/label=MP57
/note="RNA editing TUTase2; protein identified by mass spectrometry; similar to 108 kD Trypanosoma brucei 3' TUTase; contains nucleotidyl transferase, PAP core and associated domains; RNA editing terminal uridyl transferase activity"
BASE COUNT 335 a 362 c 404 g 363 t
ORIGIN
1 atgttgatgc ataccgcgcc atggcttcac atgcggctgt cgcgtctttt tcgtcaatcg
61 ccgctgtcgc tccccagtac caaactgaat ccatcccccg atcactatgc agtgtggggt
121 aaagctatta tggccgagaa taacaggcgc gttggtcctg aacacatgtt tcgaacggcc
181 atccgtgctc aacagcagtt acagggactt gcggataagt ggactcctga tgccaaggta
241 tactgctgtg gctctatggt aacatacggg cagatggaat ggggcagtga cttggatctc
301 gcgtgtatgt ttgacgaccc ttacccctca cacgaggtac aggccaaacg aacagacaaa
361 ctttggactg tcatcaagcg ttacgttccg cattaccttc gcaataacct gctgggcctt
421 acggaggcga ggacacctgt tgttaagctg cgcttcgcca acgacgagaa ggttgcgcgg
481 gcccgctaca cgccacttag cgaagaggag gataggaagg cccgcaccgc gcttcttgac
541 gtgcggaatc agtgcgttgg tgataacgat gtggagtaca tagctgagaa gatgggccgt
601 gataacgtgg agggcatttg ggttgaccgt acgacatatg ggtgtcgcat cgctattcaa
661 tgtacatcta aggagcagat gatcgaggcc atcgggttct ttcctgatgg taagataatg
721 acacgcggca tgcgggaaga ttatacacgt gatgtcctcg acgtacgctt cgtgccggaa
781 atgttcatgt atcggtggga tatttccttt gttggatatg gtgtaaagaa cagttacctc
841 atccgccact accttcacaa tgggcccgtt gccgcacgtc acactgcgat ggcagtaaag
901 gcttggggta aggcaacgaa tgtcggtgcc ggttccggtg caatgcttac atcgtacgct
961 gttactgtga tgttcattta ctatttacta gtgacgcggc aggtgttgtg ggtggatcca
1021 tggtcgctgc cacacccggc acaccttcca cgctaccctg acttctcacc actgtacgat
1081 tgcgacccta cggagctggg gaggctttta cacggtttct ttatattcta cgcacatcat
1141 tttgactacg agagggaagt tgtgagcctg aaccgcaatc gccgcagcta taggtctgat
1201 atcgggtgga atttccctca aaacaagaag ggaacgttta gctataattt ctgtatcgag
1261 gacccctatg aggatgtggg gacaggtgga ctcaacctcg tacgtcactt gcatcctgca
1321 aagtttcagc ttgtgaaaca ggagttcctc cgggcggcgc agtgcatgga gcgttttctt
1381 cccaccaatg cccctgagaa gtccattctt ggtgtgaaac gtgctgatct acggcacttt
1441 gagcgtgaca gagaccgtga atga
//
LOCUS TbREX1 2709 bp DNA INV 2-APR-2003
DEFINITION Trypanosoma brucei RNA editing complex protein MP100 (MP100) gene, complete cds; nuclear gene for mitochondrial product.
ACCESSION AY228171
VERSION AY228171.1 GI:29293901
SOURCE Trypanosoma brucei.
ORGANISM Trypanosoma brucei
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Trypanosoma.
REFERENCE 1 (bases 1 to 2709)
AUTHORS Panigrahi,A.K., Schnaufer,A., Ernst,N.L., Wang,B., Carmean,N.,
Salavati,R. and Stuart,K.
TITLE Identification of novel components of Trypanosoma brucei editosomes
JOURNAL RNA 9 (4), 484-492 (2003)
REFERENCE 2 (bases 1 to 2709)
AUTHORS Panigrahi,A.K., Ernst,N.L. and Stuart,K.
TITLE Direct Submission
JOURNAL Submitted (30-JAN-2003) Seattle Biomedical Research Institute, 4
Nickerson St, Seattle, WA 98109, USA
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT ORIGDB|GenBank
COMMENT VNTDATE|298471975|
COMMENT VNTDBDATE|298806334|
COMMENT LSOWNER|
COMMENT VNTNAME|TbREX1|
COMMENT VNTAUTHORNAME|Larry|
FEATURES Location/Qualifiers
source 1..2709
/organism="Trypanosoma brucei"
/db_xref="taxon:5691"
/vntifkey="98"
gene <1..>2709
/gene="MP100"
/vntifkey="60"
mRNA <1..>2709
/gene="MP100"
/product="RNA editing complex protein MP100"
/vntifkey="54"
/label=MP100
CDS 1..2709
/gene="MP100"
/codon_start=1
/product="RNA editing complex protein MP100"
/protein_id="AAO63565.1"
/db_xref="GI:29293902"
/vntifkey="4"
/label=MP100
/note="protein identified by mass spectrometry; endonuclease/exonuclease/phosphatase protein family; similar to Trypanosoma brucei MP99; putative exonuclease"
BASE COUNT 674 a 669 c 719 g 647 t
ORIGIN
1 atggcattgg ctcagtcatg tcgtcacttt gctgcgacga cgtaccgaca gtccaaaatt
61 acagatcgct tccagctgtt aataactaaa aaggaaattg aatgtgacta cgttgcggtg
121 gacgccactg ccctcgtcgc tacggggtta cgtctcgcaa agaacgttac aactgagcag
181 cgtcgccata aggaagtggc gcgtcatgta gtacagtcaa tacaacagtt gttgaagaag
241 gtgcgttgca agaagtttct tcttatagca atggacggag ctgagaatct gctcaaggcg
301 gatcgtacac ggggtagcag tttaacccga aaggtggaaa gtcgtctgat gagactaccg
361 ggaactccac ttatgcaggc agtggaggag cgtatcgttc gtatgatgcc agagcggcag
421 atattacccg gtgaagtggt gtttgccggc acctgtgttc aagggtgtgt cgagcagaag
481 atgtccgctt gggcacttga tctggcgtcc cgagacacct ttaacggcag cagcgactca
541 ctgaatttga ttggggcctc tgagctgtac cttaatgtgt tggcgctgtc gcccttctat
601 aacgtatcga gtgtggtgca aaataacgca gatttgcgac atatacgact gcaggatatt
661 ttggagtggc tagagctaga taagaaggcg aaggaagggg agagtgtcac aatagccaag
721 atgagaacgg atattttatt cctcttcatt atcgctaacg gcgcctcggc aactgagctg
781 aatcccattc ctgctgttgg tttccatgaa attgttgatc ggtacatgaa ggttctcgca
841 gaaaacggtg ctacgccccc ttctcaaagc gcgaccgcga gcgccccaac tgcttcagcc
901 aacctcccgg ccgccccacc atttcttttt gaggatagtc cgggcaacac actccaactg
961 aatcttcgca tgctctgtcg catcatgcag ttagtggcgc gtaaggaggc gccagcccgt
1021 gtggatggtc tatcagaagc ctacttggag cacgccttac aaacgcatgc aatgttgtgc
1081 actggacagg caccccaatg cacctacttg ccagcagcgg gtacaggaca actaggctcg
1141 acggcgccta gtgccgtgca actcgcaggt catcttgctg cattatgcgc atccacagca
1201 caacgcaatg cacggtgtac ttctctgcag ccctcgctgg taacaccaga aaagggatcg
1261 tgtgaggaag acagtccggc aacaaagctg ccgccgacac ccccaactag cgcggccgca
1321 ccagttgaag acaagccgct gacagcagct gaatacacca ttctctgtca gtcgcttccc
1381 gcagctgtgg aaggattgat tcatcagtac gtaggcatag cgcctaagcc ggatgttggg
1441 aagatgatta caacggcgac cacggaggaa gcctaccgcc ttgttcggga agtgctttct
1501 tatgcgaacc ctcttcgacc gcataagtgc ttatgccttt ccccatctta ttgctggctc
1561 cagaatgaaa agacgcaact gtggcgcttc gaatatgtcg atattggtgt caaaagtcat
1621 gaactgggga cacgtcggca actcaatgct atgaagggtg taacgcttga agtgaacatg
1681 tcccgtgatg gtccttcgca ttttgatcca ctgagtggga cgtgggagcc aattgccaat
1741 ttcccgtgcg gagcggagtg cgaatatgac aaacatactg aagaatgcac atcttctcct
1801 tcagctccac aaactgcaaa agaggttgaa ggaggaccag ttaaggcatc tttaaaattg
1861 ctgacatgga atgtcatgtt tgatcgttac agcggcaaac caactccttt aggtatgcct
1921 ggtatagatt ggtgctcccc caagaggtat cccgtcattg ccaagatcat agaggaggag
1981 gatgcggatg ttgttggcat gcaagaggtg gagcctgtat tttgggagtt cctttccaag
2041 cgggcactta tacgccaaag gtactacttt tcgtgcggtc atatgagtcc agctattgcc
2101 ccgtgggggg tgctgatgtt gatacaccgt cggcgtcttc cagtacagag catcaactat
2161 cttaacgtcc ctgcgtggac taatcatgtt tctctgatgc cggttgtggg tctgaagatg
2221 gtgcacggta ctgtacacat agctgccgct cacttactcg cgccatacac gaagtcccac
2281 gagaacgctc gtacttccca ggataccgcg ttacgccatc acatgacgaa gacgttgggt
2341 ggcggggatg tggtaactat gggagatttc aacgactggc ctacaaatga atttattatg
2401 ccacatgaat cacagtacgt ggactgttgg cccgttttgc accccaacaa ccctggaaag
2461 actatggatg aaacaaacac cttttgtaaa ctgaaagtgg aggaaatgtt ttttggccgt
2521 tccgacaagg tgtttctgcg aagcaggcgg cttgtgccag tcgaagctca tctcgtcgga
2581 acacggagtg taaacgatga gaacaacaac gccgacgcac ccgcatattt gttcccatcc
2641 gatcactacg gcgtaagtat aacgttttca ttgaaggtac cggaagttca gattattggt
2701 gccctttag
//
LOCUS TbREX2 2724 bp DNA INV 17-APR-2003
DEFINITION Trypanosoma brucei RNA editing complex protein MP99 (MP99) gene, complete cds; nuclear gene for mitochondrial product.
ACCESSION AY228172
VERSION AY228172.1 GI:29293903
SOURCE Trypanosoma brucei.
ORGANISM Trypanosoma brucei
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Trypanosoma.
REFERENCE 1 (bases 1 to 2724)
AUTHORS Panigrahi,A.K., Schnaufer,A., Ernst,N.L., Wang,B., Carmean,N.,
Salavati,R. and Stuart,K.
TITLE Identification of novel components of Trypanosoma brucei editosomes
JOURNAL RNA 9 (4), 484-492 (2003)
REFERENCE 2 (bases 1 to 2724)
AUTHORS Panigrahi,A.K., Ernst,N.L. and Stuart,K.
TITLE Direct Submission
JOURNAL Submitted (30-JAN-2003) Seattle Biomedical Research Institute, 4
Nickerson St, Seattle, WA 98109, USA
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT ORIGDB|GenBank
COMMENT VNTDATE|298471941|
COMMENT VNTDBDATE|300125479|
COMMENT LSOWNER|
COMMENT VNTNAME|TbREX2|
COMMENT VNTAUTHORNAME|Larry|
FEATURES Location/Qualifiers
source 1..2724
/organism="Trypanosoma brucei"
/db_xref="taxon:5691"
/vntifkey="98"
gene <1..>2724
/gene="MP99"
/vntifkey="60"
mRNA <1..>2724
/gene="MP99"
/product="RNA editing complex protein MP99"
/vntifkey="54"
/label=MP99
CDS 1..2724
/gene="MP99"
/codon_start=1
/product="RNA editing complex protein MP99"
/protein_id="AAO63566.1"
/db_xref="GI:29293904"
/vntifkey="4"
/label=MP99
/note="protein identified by mass spectrometry; endonuclease/exonuclease/phosphatase protein family; similar to Trypanosoma brucei MP100; putative exonuclease"
primer_bind complement(413..437)
/vntifkey="28"
/label=5971\binding\region
BASE COUNT 665 a 678 c 729 g 652 t
ORIGIN
1 atgttgcgcc gcagtcgctt gcacctgcta gcggactacc gcacgtcgtc caagatatca
61 gatgaattta acaacgtatt gaatcggagc ggatgggggt ttgatcatgt cgccgtcgac
121 gtcggatctc tctccggcgc ggcaggacgt ttgacacgcg accttattgg ccaggagcgc
181 gatgcggaaa cggtgaaaat tattcacaaa caaatcacaa atgtaatttt gcgtcgtatt
241 caaccgaaga agtcactcgc aattttcatt gacggaagtg agccgttatg gaaagtgcgt
301 cacatgcggt tatatccggg aaagaaattt gagggaaagt tctaccgcag tgcagcgtcg
361 cccatggttt attcgcttga agacaagctt cgttgtgtgg gtccggatct gcggacacca
421 ccaaaggagt ttattgtaag tggaccggca gcaccggggc cagtggaggc aaaactctct
481 gcgtggatgc ttgacctcgc gacccctgca cttcccgatg gagcggtaac gacccctaca
541 gttaccggag cggctgcggc tgcttctgcc tcggcagggc cacctgaagt aacattcaac
601 gacacatttt gcctcattgg aggtaatgat gcgtttctat ccgccctcgg cgcaacaccc
661 tttcacaaca tcactaccgt aacacttcag caaggagaga tgaaatccct ttccttgagt
721 gaggcactgg agtggtttgc gatggatcat ctactgaaag gcgaaacatc aatcggttct
781 ggagggaatg aacttcagaa gaggttggct tctgtacgca cagacattgt actcctgtac
841 ttgatggcga atggtattag cgcgacagat cttcccggcc tgggcgtgaa cttcaaggat
901 ttgatggaag cctacactgc agaggaggct aacaaactct acttattcgg gaaaacatct
961 gaagagcgat gtttgcggat gtgccccctt aaccttgagc gtgtactaac ccacgctact
1021 cggaggacat caacaccgac tcgtttttgt cagcagtccg cggattacct cgagattctt
1081 ctacaaaccc actccatgat atgcgatgga ggcatcaaga attttcggtg gacacccaac
1141 gacaatgacg ccgtcccgga gaagcaacct aaaattccca ttgagcgctt tattggtcat
1201 ctgaaacatc tggctgcgca gggcggagaa accaccgccg tcgctgatgt cgggagcact
1261 gaaccgggtc ttgctgcctc cgtcgattgg acatttgcgc tgacagggat tgagacactg
1321 cttttgagcg cccccaaggc agaaatgatc gatcaaatta ttcccgtatt cacaaaaggt
1381 cacacacttc ccgatggcgt tgcccaggat atcgtggaca cgaagaacgt cgtggaagct
1441 cttcacaaag tgcgtcgtgt gctacaggtt gttgtgacaa gcgacaacag tggtaatgat
1501 gacggcagaa tagagcaccc agcctttaac cactatccga ctcactactt tgtgcggacc
1561 ccaggttccc gcgggccccc tcctgggtgg acgtacaaaa gtgtcaatct gggggtgcga
1621 gccgtcgctc ttggcgtgag gcaccgtgtc gcttcgggaa tgttgacggc ggcttctcga
1681 gtgcttgaca gtggtggcgt ctcctccaag aattctctct ttgtatttca tgtgaaggac
1741 ggtataacaa cccccagtgg cgggggaaac gaggatggct ggttagagac accgtgccat
1801 gagctggctg gctcctctgc aaacccagca tccaaggaga tttcaacgct tcgggtggta
1861 acctggaatg tgcagtttag tcgtcacagt ggcgagcgga cgccgttagg gcgtgatgga
1921 attgattggt gcacttcaac aaggtacgtg gcactcgccc aaacattgga ggggcttgac
1981 gctgatgtta ttggtatgca ggaagtagag ccagcatggt gcaagtatct gtcgcaacaa
2041 ccgtgggtac gggagaagta tgccatgact tgctgtgagc atagtcacgc cattcaacct
2101 tggggagtca tgttactcgt tagacggtca ctctgcgtaa cgtctacgca ccacgcaaat
2161 gttcccgctt tttcaggaca tacgagtgtg atgccggaag tcacagtggt tgtgtctgaa
2221 ggtgttccgg tgacggtggg ttcgatgcac cttcttgctc cttataacca gaacaacatc
2281 agtaaccgca caactcaact cgacaattta acgaaacgac tacgcacgcg accccctatt
2341 aacggtaagc aagcaggatt aattgttatg ggtgatttta atgactgcgc gaagaattac
2401 ttcacctttc ccccggaaat gggctttaaa gacgcttggt tacttcttca ccccgatgaa
2461 ggtgtgagca gcaaatcagg ccacaccatt gatggcgacc gaaatcctta cgccgcacag
2521 attattgaga aagaattcta tggacgcgcg gaccgagtat tgttttcctc tcgaaactta
2581 caacctattc aaactgagat tattgggacg acctctgtcc gtgagatggg gatcacaaaa
2641 caggtggaca ttgacaagga cgttccggag tatttgtacc cgtctgacca tttcggtctc
2701 cttgttgagt ttcaggtggt ttag
//
LOCUS TBRGG1 3447 bp DNA INV 13-JUN-1999
DEFINITION Trypanosoma brucei brucei mitochondrial mRNA for poly(u)-binding protein.
ACCESSION Z96795
NID g2765825
KEYWORDS poly(u)-binding protein.
SOURCE Trypanosoma brucei.
ORGANISM Trypanosoma brucei
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Trypanosoma.
REFERENCE 1 (bases 1 to 3447)
AUTHORS Vanhamme,L., Perez-Morga,D., Marchal,C., Speijer,D., Lambert,L.,
Geuskens,M., Alexandre,S., Ismaili,N., Goringer,U., Benne,R. and
Pays,E.
TITLE Trypanosoma brucei TBRGG1, a mitochondrial oligo(U)-binding protein
that co-localizes with an in vitro RNA editing activity
JOURNAL J. Biol. Chem. 273 (34), 21825-21833 (1998)
MEDLINE 98371021
REFERENCE 2 (bases 1 to 3447)
AUTHORS Pays,E.
TITLE Direct Submission
JOURNAL Submitted (04-JUN-1997) Pays E., Universite Libre de Bruxelles, Rue
des Chevaux 67, Brussels, Rhode-Saint-Genese, Belgium
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT ORIGDB|GenBank
COMMENT VNTDBDATE|161523455|
COMMENT LSOWNER|
COMMENT VNTNAME|TBRGG1|
FEATURES Location/Qualifiers
source 1..3447
/organism="Trypanosoma brucei"
/sub_species="brucei"
/strain="EATRO 1125"
/db_xref="taxon:5691"
/dev_stage="bloodstream form"
/vntifkey="98"
misc_feature 1..19
/vntifkey="21"
/label=Misc_Feature_1
/note="mini exon; common transplicing acceptor site for monocistronic (ORF-I) and dicistronic (ORF-I plus ORF-II) transcripts"
gene 43..432
/gene="ORF1"
/vntifkey="60"
CDS 43..432
/gene="ORF1"
/codon_start=1
/product="hypothetical protein"
/protein_id="CAB09568.2"
/db_xref="PID:e1428704"
/db_xref="PID:g4741688"
/db_xref="GI:4741688"
/vntifkey="4"
/label=CDS(ORF1)_1
misc_feature 557
/vntifkey="21"
/label=Misc_Feature_2
/note="transplicing acceptor site for ORF2"
polyA_signal 697
/vntifkey="25"
/label=PolyA_Signal_1
/note="polyadenylation site for ORF1"
gene 889..2928
/gene="ORF2"
/vntifkey="60"
CDS 889..2928
/gene="ORF2"
/function="probably involved in mitochondrial transcript
processing"
/codon_start=1
/product="hypothetical protein"
/protein_id="CAB09569.2"
/db_xref="PID:e1428705"
/db_xref="PID:g4741689"
/db_xref="GI:4741689"
/vntifkey="4"
/label=CDS(ORF2)_2
/note="homologous to RGG RNA-binding proteins; polyadenylation site for ORF2"
polyA_signal 3427
/vntifkey="25"
/label=PolyA_Signal_2
BASE COUNT 898 a 807 c 1000 g 742 t
ORIGIN
1 cagtttctgt actatattgg aatactagga ggaaaggaca tcatgagcgt acctgagtgg
61 gcaagaagtg agcattccat tgaggaggct aaggaatatt tgcggacggg aaattcagtg
121 gacttcttcg agttagtttc gagccacatc ctccgagaac accccctgga tgttgcggcc
181 tttgccctgg atctagtaga acgtatttca aagttaggga acactctttc agcccgcgat
241 tatcacccta agagggtaga ggataataag tacctgcagg aaaagaatgt gtgcgaattc
301 cttaacgagt ggatattggc ccttttgaaa gagcgcccag acacggacga ggctcgtatg
361 agcttccata agcgctacct caagtcactg gtagatggtg gcggttgttc ccaatgtact
421 tcggtcaact gaacataagc aagggcaagt acgcgagatg tagggagcga tcagcgaagg
481 ggaagaaaac taaaaaggga gaatagtcaa aaaaggacag tcgaatctta gtttctggaa
541 ctgctctcgc ttttttagct ttagttccta acctctgaag aatatcatat ccaaatacga
601 atattatcaa atggcttgat ggtaggtggc ccgtattttt gcttctttgt gtttcttgcc
661 ttctcaggct tggttgttag acctatggta gataacacat cattgttttt ctttcgacac
721 ccccgcacgg tgacgccgat ggtaacgtta ccgacgtgcg gggtaccact tcgttccact
781 actatttcca tgatggacat aaacatgcta cttattatct cgcttactct tttgagcaag
841 ggtaagtctg tggaacggtg atattgttgg tttgacgacc caagcactat gttgcggcca
901 ttcgtcggga ggataggacc gctgggaggc catgggcaca gaaggatggt gtgtagcacc
961 atctgcctgt ttcagcgtgg ccagtgggga aatgaagggt ccagaggaga tcagcgcaac
1021 tacgacaatc gaggtggccg aggcgagtgg ggagaccggg gcggtcagcg tggtgacaat
1081 cagcgcgact accgagatca gcgcaactac gacaatcgag gtggccgagg cgagtgggga
1141 gaccggggcg gtcagcgtgg tgacaatcag cgcgactacg gagatcagcg caactacgac
1201 aatcgaggta gccgaggcga gtggggagac cggggcggtc agcgtggtgg caatcagcgc
1261 gactacggag atcagcgcaa ctacgacaat cgaggtagcc gaggcgagtg gggagaccgg
1321 ggcggtcagc gtggtggcaa tcagcgcgac tacggagatc agcgcaacta cgacaatcga
1381 ggtggccgag gcgagtgggg agaccggggc ggtcagcgtg gtggcaatca gcgcgacaac
1441 tctaaccagt tcggatacag gaacgagaga gatggtggga tcggacggca gcggtcggcg
1501 cgcgacaatt ttggcgccca tgacaatcgt gcttccgatg aacgtggatc aactgacccc
1561 gccgtgggag aagtgtttga tgaacaagct gccaagatcc tctacgaact gaaacgccgg
1621 tttaagagct caaaaaccgg gaaagagaga agggacgtac aacgtgaggc ccgccgcatc
1681 gtgcggcgag cgcgcgtcga cccatcgacc caggacgaga aatcggtgac actacttctc
1741 aactgtgccg ctaccttccg gtgctatcca catacagagg gaatcaaaca ggctacagaa
1801 tggatgcgga aaaatattga cggcttgtca ccccaaaacg tggccctctt cacgaacgca
1861 attggagcgc tctcggtagt ggatagcgat accattttaa ttaatgagat atctcctgca
1921 gtggaagctt gttacgggca aatcaacccc gtggaactag tgatgaccct gcaagccttc
1981 caacgtggga gaataacaga aaatgaagac cttcaggtat cactattgca gcagttagta
2041 acttgtgtgc cgcagatgcc gggcggcccc aactgtccac tggcgggcgt cttggtggac
2101 acacctctcc ggaaacgtga cgaaggccga cgtggcagga gatcggccaa aactgtcgtc
2161 tcaaaggcag ccagcggtgc ggagaacatg cattctcgag aggttataac gcttctaaaa
2221 gccacaccgc gccttggtgt cccggaagac cacagtttcc atctggttga tcgggccatt
2281 gcgacagtgg ggttccacac ggacgagcaa attggggagc ttcttgaagc agtatcatac
2341 taccgtgatc ctcaaaagac ttgtgggagg gagctgaacg aaaaactcga caaattggtt
2401 gatggcgtat gggctcgtct tcagaaagtg gctccctttg cggatgctgc aagtgttaca
2461 acgatcatgc gtgccgcgca caggtcaggt gtcgatgttc ctcgtgacat tgtgagcact
2521 ctggttcaag cggtgatgag ggagctccgt taccaccgtt ttaccttccg gcgagtggcg
2581 tcattgtctg aggctgtggc gttgcagaag gtacccgcga aggagctacg tcccatgctt
2641 ggcgactact gcatcggaaa gcgacctcca cgggaggagc gcggcgagaa cacccccgtt
2701 gatgaccata actcaggaat tgaagaacgc atggacatat atgctcgctt ccttggggac
2761 ttgacaaaag cgcgtattgc actagaaaat gcccacagtt ccaacgccgg aaacggtgaa
2821 ccgggttcaa gtgtttctca gattcttgca cagaggctgg aagacagcgt cgtccgcccc
2881 tccgcgggag cttctcaagt ctgtgcgagc gatctgcacc gcagctgacg actgcccgtt
2941 tcgaaatcgt gcgaatgacg gaaagatcat agcactgtct gagcaacgga ttgcgaagga
3001 gggcgccagt ttcatggagg gagtgcgcaa gacgaccatg gaaaattttc tgtcggctgt
3061 tagtggcatt ccacaggcgc agaaggtggt tgaggtactt tcccaccaaa ctaggtaaaa
3121 atacctcctt ggcaaggtgg aggtgggcct ctgcacaaac gcaatcacat gtaagtgaca
3181 tgtgccaatc tgtaataatc ctttacgttc acagaaatgc ctttgttatc cacatgcaca
3241 tacacgaaga ggcggagcgg aaaggagaaa aaaaagataa aaataggacc ctgaggggct
3301 tctatttatc ggaaattttt ttttcttgaa tccacgacct ccagcggcgc gcgtgtcagg
3361 gtgacctcac taggggtgtg ctgaccgtag gagtaaagta taaaccgtat gtttctctca
3421 tttgttcaaa aaaaaaaaaa aaaaaaa
//
LOCUS TMP63 1767 bp DNA INV 2-APR-2003
DEFINITION Trypanosoma brucei RNA-editing complex protein MP63 gene, complete cds; nuclear gene for mitochondrial product.
ACCESSION AF382334
VERSION AF382334.1 GI:14495337
SOURCE Trypanosoma brucei.
ORGANISM Trypanosoma brucei
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Trypanosoma.
REFERENCE 1 (bases 1 to 1767)
AUTHORS Panigrahi,A.K., Schnaufer,A., Carmean,N., Igo,R.P. Jr., Gygi,S.P.,
Ernst,N.L., Palazzo,S.S., Weston,D.S., Aebersold,R., Salavati,R.
and Stuart,K.D.
TITLE Four related proteins of the Trypanosoma brucei RNA editing complex
JOURNAL Mol. Cell. Biol. 21 (20), 6833-6840 (2001)
MEDLINE 21448979
REFERENCE 2 (bases 1 to 1767)
AUTHORS Panigrahi,A.K. and Stuart,K.D.
TITLE Direct Submission
JOURNAL Submitted (21-MAY-2001) Seattle Biomedical Research Institute, 4
Nickerson St, Seattle, WA 98109, USA
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT ORIGDB|GenBank
COMMENT VNTDATE|274811214|
COMMENT VNTDBDATE|298806336|
COMMENT LSOWNER|
COMMENT VNTNAME|TMP63|
COMMENT VNTAUTHORNAME|Larry|
FEATURES Location/Qualifiers
source 1..1767
/organism="Trypanosoma brucei"
/strain="TREU427"
/db_xref="taxon:5691"
/vntifkey="98"
mRNA <1..>1767
/product="RNA-editing complex protein MP63"
/vntifkey="54"
/label=mRNA_1
CDS 1..1767
/codon_start=1
/product="RNA-editing complex protein MP63"
/protein_id="AAK64279.1"
/db_xref="GI:14495338"
/vntifkey="4"
/label=CDS_1
misc_feature 181..246
/vntifkey="21"
/label=Misc_Feature_1
/note="Region: C2H2 zinc finger motif"
misc_feature 1231..1296
/vntifkey="21"
/label=Misc_Feature_2
/note="Region: C2H2 zinc finger motif"
BASE COUNT 403 a 474 c 495 g 395 t
ORIGIN
1 atgtaccgca ggttctttcg cagcgcagcc gttaagcatt taggcacgac gagtgcgcaa
61 tgtctgatgc gtgcaacaaa atatccctgt ggcgcgatgt gcaggaatgc tagcagctgc
121 cacccacaga cactgggcta ccaacagagg ttccaatcaa caacggacaa gaagtttcac
181 tgtagcgtgt gtaagaagcc atttcgtctt gaaatggcgg ctaagttgca cctccagcag
241 gcgcatggcg gagacggttc tgtggaggcc ggccccggac ccggtgtcga ggcctcatcc
301 gttaacgttg tcaacacacc ggtgccctca ccgataagtc ctgttgagcg aacgtttgtc
361 gatgaagaag agcgccgccc gcgtcgcatg aggccgacgc cgaagcctct tcatcaaccc
421 gaccgtgaca taccagctgc tgcgatggaa gagatgcttg gcgtatggga caaaattggg
481 ttgaacaggc tggagggtaa ctttgtgcac agcacgatgg tgatgaaggt gtttgctgcg
541 ccccctgatg tgtcagagat acccctttat gaacacgttg cccccgaggg cgagaatcca
601 ttcgatagtt tggaccacat gaccacaggt accgtagatg cgacgtacgt tggtcatgat
661 gctttcgcag aagtggacct ggtggaccct tttgttgccg cacccgatca aacattgaac
721 ccatttcgcg ctggaaaggt ccgaaaccct tttacgcgaa tctctcccac acaacgggag
781 gtagtcaagc cattgcaacc gccccaaccg aaagaggagc cacttaaagc ccctgttaca
841 ccgtttgggc agctgccgat gttcgggcag accagggagc caagtgcctc atttgcagca
901 gcagctgttt cggtccaagc ggccgcaaat ccgaatgagg tttcttcacc attcgcagct
961 gcagtcagta gttcaccctt tgttggtcag gttgcgtcgc catttgctcc tgcgcaggat
1021 gtggcgggga gcccattcga ggcgtcaccg tgcgcggcct cgtcaccctt tgttacagcc
1081 ggagggcagg aaacatctcc ctttgcagct ccgtctacac ctgcctcctt cggtcagggg
1141 agcttgtttc ctccaatggg gacgggagcg cctgggtttt acttgcaatt actgagactg
1201 agcagcgcca acaggagctg gagcacgggc tgccccacat gcggaaaaaa attttctacg
1261 tttgagggag ctgccatgca cagcaagtca aaacacggaa ttgtgctaga atctaagaag
1321 gtgaaagaca ggctgaacag aaagggagtt cctgatttac ccgcgtacgt gcccagtccg
1381 gtggatttgt cttccacctc cccctttgga accaggtctg ccatcggagc ttcatgggcc
1441 gaaacggagc tcatccccca tgcgcagtgc gtgagtaaca tcactattgt tggccgcgtg
1501 ctcgatgttt cgcaggcgtc ggagaatgtg tctcacgtga ctgtttttgt tgaaggagag
1561 cggagtggtg aggaggagac cttgacactt tgttgctttg gcgaggtctc tcaaaaaatt
1621 cgtgggactt tgaagcgcaa cgcaacgata ttcgcaagcg gcacccttcg gcttcatcct
1681 gtgtacgaag catcaaacaa caaatattac gtgagtcctg tggtgcatgt gtcaatgccc
1741 acagggactc tagctgtgat cacataa
//
LOCUS LmAP2 1608 bp DNA 22-JUN-2003
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|295283593|
COMMENT VNTDBDATE|306087091|
COMMENT LSOWNER|
COMMENT VNTNAME|LmAP2|
COMMENT VNTAUTHORNAME|Larry|
COMMENT Vector_NTI_Display_Data_(Do_Not_Edit!)
COMMENT (SXF
COMMENT (CGexDoc "LmAP2" 1 1608
COMMENT (CDBMol 1 0 1 1 1 0 0 0 0 "" "" 0 0 0 0 (CObList) (CObList) (CObList)
COMMENT (CObList) -1 "")
COMMENT (CDocSetData 1 1 0 0 0 0 "MAIN" 1 1 1 1 0 0 1 1 1 0 10 10 4294967295 50 0
COMMENT 1 0 (CHomObj 1 0 0 3 100)
COMMENT (CWordArray 47 49 50 48 51 52 81 0 1 3 4 82 5 83 2 6 8 7 9 61 10 11 12
COMMENT 13 14 15 16 17 18 19 84 20 85 21 22 86 87 88 23 54 62 24 89 25 26 55 91
COMMENT 27 28 29 30 31 92 32 34 35 33 53 58 93 56 94 37 57 38 36 39 40 41 42 43
COMMENT 95 44 59 99 96 97 45 100 46) (CWordArray)
COMMENT (CStringList "NheI" "XbaI" "BamHI" "NcoI" "NotI")
COMMENT (CStringList "atg" "gtg") (CStringList "taa" "tga" "tag")
COMMENT (CObList
COMMENT #0=(COligo "7131" "CCAGCGCGGTGGCGGGATCCATGGCGTCGAGCTCGGCTG"
COMMENT "5' oligo Exp 666" 0 (CStringList) 0)
COMMENT #1=(COligo "7114" "CAGCCGGTGGTCTTCTCGTCCATTCTAGAATCGAAGCGGTTATGGTG" ""
COMMENT 0 (CStringList) 0)
COMMENT #2=(COligo "7113" "CCAGCGCGGTGGCGATGGCGTCGAGCTCGGCTG" "" 0
COMMENT (CStringList) 0)
COMMENT #3=(COligo "7112" "CCATCGGGCGCGGATCCCCATGGATGACGATGAAGA"
COMMENT "5' primer - inserts NcoI site downstream of Bam site" 0
COMMENT (CStringList) 0)
COMMENT #4=(COligo "7111" "TCTTCTCTTTTCCATTCTAGACACGTACACGACTAC"
COMMENT "3' pcr primer - changes Bam to Xba site" 0 (CStringList) 0)
COMMENT #5=(COligo "7110" "AGCTAACCATGGCGGATCCATGACGATGAAGA"
COMMENT "5' primer - insert NcoI site" 0 (CStringList) 0)
COMMENT #6=(COligo "7109" "GGCAGTGAGCGCAACGCAAT"
COMMENT "Antisense primer for PCR amplification of a region of pSAP17" 0
COMMENT (CStringList) 0)
COMMENT #7=(COligo "7108" "ACGTTGCCATGGTCCTACGCCACTGTACCTCTACGT"
COMMENT "Sense primer for PCR amplification of a region of pSAP17" 0
COMMENT (CStringList) 0)
COMMENT #8=(COligo "7107" "CCTCACTAAAGGGAACAAAAGCTGGAGCTCCACCGCGGTGGCGG"
COMMENT "Antisense primer for PCR amplification of a region of pSAP1" 0
COMMENT (CStringList) 0)
COMMENT #9=(COligo "7106" "CCTGTCCCCGGGCCATGGGGATCCATGCACGCTC"
COMMENT "Sense primer for PCR amplification of a region of pSAP1" 0
COMMENT (CStringList) 0)
COMMENT #10=(COligo "7105" "GATCTCGTCGTGACCCATCGCGATGCCTGCTTGCC"
COMMENT "Mutagenesis primer - chnages G4454 to C in pSAP1 - destroys NcoI site"
COMMENT 0 (CStringList) 0)
COMMENT #11=(COligo "7104" "CTGCCCGCCACGCAGCGATGGCCGCGAAGG"
COMMENT "Primer for mutagenesis - changing a C 7072 to G in pSAP1" 0
COMMENT (CStringList) 0)
COMMENT #12=(COligo "7103" "TTCTTCCCCTCCTTC"
COMMENT "Sense primer for PCR amplification of a region of pSAP10" 0
COMMENT (CStringList) 0)
COMMENT #13=(COligo "7102" "CTCGTCCATTCTAGA" "" 0 (CStringList) 0)
COMMENT #14=(COligo "7101" "CCCTGTCCCCGGGCCATGGATCCATGACGA" "" 0 (CStringList)
COMMENT 0) #15=(COligo "7100" "CTCCACGTCCATTCTAGA" "" 0 (CStringList) 0)
COMMENT #16=(COligo "7099" "CGCCTAGTTCTCCATGGATGCAAGCGTTGGGCGC" "" 0
COMMENT (CStringList) 0)
COMMENT #17=(COligo "7098" "GAGCTCCACCGCGGTGGCGGCCGCTCTAGTT" "" 0 (CStringList)
COMMENT 0)
COMMENT #18=(COligo "7097" "AACTAGAGCGGCCGCCACCGCGGTGGAGCTC" "" 0 (CStringList)
COMMENT 0)
COMMENT #19=(COligo "7096" "CCTGTCCCCGCCATGGGGGGATCCATGACG"
COMMENT "Mutagenesis pcr primer" 0 (CStringList) 0)
COMMENT #20=(COligo "7061"
COMMENT "ACGTGCGGCCGCCAAAAAACCCCTCAAGACCCGTTTAGAGGCCCCAAGGGGTTATGCTAGTTAGCCAGCCCAAAGGCGAG"
COMMENT "Antisense primer for PCR amplification of a region of 132 bp pcr of G4 central + T7"
COMMENT 0 (CStringList) 0)
COMMENT #21=(COligo "7060"
COMMENT "GCAACCATGGTAATACGACTCACTATAGGGGATACAGGCACCACACATGGATCTTGGGC"
COMMENT "Sense primer for PCR amplification of a region of 132 bp pcr of G4 central + T7"
COMMENT 0 (CStringList) 0)
COMMENT #22=(COligo "7059" "GTGCCTTTCCACCAGATCGATCTG" "" 0 (CStringList) 0)
COMMENT #23=(COligo "7058" "CACGCTGCAGGGATCGGGTACGAATTC" "5' PCR PRIMER" 0
COMMENT (CStringList) 0)
COMMENT #24=(COligo "7057" "ATTAGCGGCCGCCAAAAAACCCCTCAAGACCC"
COMMENT "Antisense primer for PCR amplification of a region of pJAL1-1" 0
COMMENT (CStringList) 0)
COMMENT #25=(COligo "7056" "GCGCATCCATGGTAATACGACTCACTATAGGGTCG"
COMMENT "Sense primer for PCR amplification of a region of pJAL1-1" 0
COMMENT (CStringList) 0)
COMMENT #26=(COligo "7054" "CCATGGCCCGGGGACAGGGGG" "" 0 (CStringList) 0)
COMMENT #27=(COligo "7053" "CTTCATCGTCATGGATCCCCATGGCCCGGGGACAGGGG" "" 0
COMMENT (CStringList) 0)
COMMENT #28=(COligo "7052" "CCCCTGTCCCCGGGCCATGGGGATCCATGACGATGAAG" "" 0
COMMENT (CStringList) 0)
COMMENT #29=(COligo "7051" "TGTGGCTCGCTGCGC" "" 0 (CStringList) 0)
COMMENT #30=(COligo "7050" "AGGCTTCCCGAACGC" "" 0 (CStringList) 0)
COMMENT #31=(COligo "7049" "AACACAAGATCGCCATA"
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COMMENT "Antisense primer for PCR amplification of a region of pSAP-3" 0
COMMENT (CStringList) 0)
COMMENT #33=(COligo "7047" "ATCCAGATCTGCCATGG"
COMMENT "Sense primer for PCR amplification of a region of pSAP-3" 0
COMMENT (CStringList) 0)
COMMENT #34=(COligo "7046" "ACGAGTGCTAGCGGTTTCGACCAGAGGAACAC"
COMMENT "Antisense primer for PCR amplification of a region of NSBP-tag" 0
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COMMENT #35=(COligo "7045" "GTCACTTCTAGAATGGACGTGGAGGCTTGGCTGGGTG"
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COMMENT "Antisense primer for PCR amplification of a region of pSAP2" 0
COMMENT (CStringList) 0)
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COMMENT "Sense primer for PCR amplification of a region of pSAP2" 0
COMMENT (CStringList) 0)
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COMMENT 0 (CStringList) 0)
COMMENT #39=(COligo "7034" "GAACTTTTTGACGTATGATG"
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COMMENT #44=(COligo "7007" "GCGGCCGCGGTTGACTTCCCCGCGGAAT"
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COMMENT 0 (CStringList) 0)
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COMMENT 0 (CStringList) 0)
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COMMENT #92=(CWidgetStyle "Molecule Label 2" 0 0 1
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COMMENT "@L bp" 0)
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COMMENT #102=(CWidgetStyle "Mark 1" 0 0 1
COMMENT (LOGFONT 0 0 0 0 400 0 0 0 2 7 48 2 2 "Windings") 0.7 0 1 2 "?"
COMMENT 0)
COMMENT #103=(CWidgetStyle "Motif Label" 1 (LOGPEN 0 0 16744512) 1 0 1
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COMMENT #104=(CWidgetStyle "Fragment Label 2" 1 (LOGPEN 0 0 0) 1 0 1
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COMMENT #114=(CWidgetStyle "Motif" 1 (LOGPEN 0 0 0) 1 0 0 0 0)
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COMMENT (70 (CShapeMapEntry 0 "Unique RSite" 1 "Uniq RSite Label") 67
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FEATURES Location/Qualifiers
CDS 1..1608
/vntifkey="4"
/label=Lm\MRP-AP2\ORF
sig_peptide 1..225
/vntifkey="94"
/label=Mito\signal
CDS 226..1605
/vntifkey="4"
/label=ORF\(-\mito\sig)
BASE COUNT 329 a 489 c 491 g 299 t
ORIGIN
1 atgcggcgtg cgactgcgta tcaccagatg cggcaagtgg cagtgatgct tggcaccact
61 ggtgcctttc cggtccttag cgcggcttta gctcggtcga tgtccgccgc tgccggcacc
121 gccatccacc aacatcacga ctcgcatcgc cgcgcccccc gtatgcggcc tcatcgtgcc
181 tccttgtcga acgggaccac ggcgttggcg cacagttgcc gctggcaatc gtcggccgct
241 ccacaccagg acttcagcca catcacacat gatctcgtgt ggggtttgtg gaatgagggc
301 aacctcttct ctctctcgac ggcagagctc acgtactact tgcagcaaca gcagcagcgc
361 gctggcggca gcagcacgtt cgtgattgac cctcaggcga agaaaagcac tctcgtgcgg
421 caagtggagg aggtactgtc ggcggagcag gcaagcatca cggtgccgca ggacgccggt
481 gcgacggtga ccatgactgg ctccgaccgt gtcgaggaaa cgctcgacga ggcggacgag
541 tacggtgact ggggagccga gcccggcttt gaggagcggc gccacattga ctacatggag
601 ttcaacccgc tgcgcatggg cgaacggtac gagccgcttg tgccgcgcgc ctaccagcta
661 cttcacagcg acctctccgc cgatgttggt ctgacagcgt tggacccgtc caagtttcct
721 gggcaaagca aaaacaaaat tgcctacctt gtctcaaaag tgaatgtaga caaggcgaac
781 gagcagcact tccgccgcgg acttgagtgg tgcctcgcca acctgtggaa caccaacatg
841 aacggcgagc tgaacatcgg cgccggccgc gtcattttct atcgcaccat tgcaaaacag
901 aaccgcaaca cgctccctct gtggacgctg cagcggcacc tctatgccta ccacccgtac
961 gtgtggtttg ccatcgcctc cgcctccaac gcggaggcga tggagaagct ggctgagcga
1021 cttgggatga agctagtgca ggatgcgacg acaagctaca agatcagcat ccgtcgttct
1081 agtgagctgc tcgatgggga gctgaacgcg cagctgcagt gcaccaagat gaaccggccg
1141 tgggacagat ttctcatcac gcactacgtg cgctctcaaa tgcccgatct gcggtttctc
1201 gtgcgtgcgc gtcatcccat caagaagcgt gtcacggacg cctacctcga ggcggacatt
1261 ctccgcagca ctcgcgactc ggtacagtcg gtgctctcgc cggagcttgg tgaagtctgc
1321 tactgctgcg agcgcgtgat tcgaaagtgg gcgatgcgga cgcagacggg tgtgacgctg
1381 cagctcgtgg agacacgacg cactccactt atcatcacca aggctggcga cgagggcgaa
1441 cgactcgagt acgagtggat tgtggtgctc cctcagaaag cggagcgtat cgatatcgcg
1501 gccctgtcgg cggagctgtg ggactacggc aatgtgctgg caagagagct ggagccgggc
1561 atggaggagt tcctgtctca tacgatgacg gccgcagcct cctactaa
//
LOCUS LmAP3 1614 bp DNA 24-MAR-2005
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|295284199|
COMMENT VNTDBDATE|369839532|
COMMENT LSOWNER|
COMMENT VNTNAME|LmAP3|
COMMENT VNTAUTHORNAME|Larry|
FEATURES Location/Qualifiers
CDS 1..1614
/vntifkey="4"
/label=Lm\MRP-AP3\ORF
sig_peptide 1..57
/vntifkey="94"
/label=Mito\signal\(Mito\Prot)
CDS 58..1611
/vntifkey="4"
/label=ORF\(-\mito\sig\and\no\stop)
primer_bind 1568..1611
/vntifkey="28"
/label=6729
primer 58..87
/vntifkey="27"
/label=6728
/note="Primer has extra CACC at 5' end for directional cloning"
primer_bind 658..677
/vntifkey="28"
/label=6769
primer 100..115
/vntifkey="27"
/label=6768
BASE COUNT 308 a 500 c 515 g 291 t
ORIGIN
1 atgtgcacaa gcgtcaactc tccccctcgc ttctttcctc tcttggagtt tgcacatgcc
61 gcgcctactg acgcgcgttc tgggccccac gcttctctcg ctgtaactct ttgcccccgt
121 gcactgtccc tgcgccagat agcgaacacc cgaggcgggc cgtatacaag gatggagctc
181 actgggccat tgctgcatcg ctcgccgatg cgtgcccttg cgtctcccat gcactttagt
241 agcaccccac ttcggtggac gagggcgacg tcgtcgctca tgcgcggctg gacgggtttg
301 caagctgctt cttcctccgc gtgggcgagt agcagcaggt gctgctgcta cccagcgacg
361 cagatggtgt cgtgccgctg gcaatccacc ggggacgggt acgggtacat gacagacgac
421 tcctccgggc ttcagtcgga gctttcgcac gcgctggagg gagagggcaa cctgtccgtg
481 gatgcgatgc tctctcagtc tctcgtaaag gcggacctgc agacgccgag tgcgcgcatt
541 ctgctgaaga agattgagcg gcctccgggc cgattcgatc ttttgaccaa ttcgctggtg
601 tacagctggc agacaacagc ggcgcaggcg cgcaaggtca ccgggccgat gcgagagtgg
661 gcctcggagc tcaagtaccg caccggcgtc cacctagagg ttgagcccac caacccgacg
721 cggctcggcg tgccggagga ggagggcggc tacgcagcag cggacgatgt ggagctgaca
781 gtatacctct tcggcagcga gcgtggcatc ttcaactgcc ggcagctcat ggagacggcg
841 ctcgatcaga accccgcgta cgtgcgcttg gccgtgttcc ggcgaaggcc aggtaagggc
901 gtcagcacaa gcactgccgc ggtgccgagg ccacaggaag atgtggagtg gttgctgctg
961 cgccgcatca atcgcgatct gcgcccgcca gatatcccgc cgatctcact aaagacacct
1021 ggaaagtgga cactgctgta cgagcaatac aaggaggcgg caattcgcac cctgtgggaa
1081 gagacgggca tcaccgtcga ggccgggaac gtgtacccta ccgcggtgct gtgccaggac
1141 aacccgatct actactggcg tgtgccggtg cactacttcc tggctgaggt gccctacgac
1201 gtacaggtgc ttggcccaca agtgggtctg aacacgtaca tgcaccactg ggactcgtca
1261 ctgctgcgcc agtcaccaga ccccatcgat cgcgcgtggg ctcagctggc agacccggag
1321 accggctgcg cctggatgaa gcagccgatg atagatgagc tgcagcgtcc gttgcgaggg
1381 gagaactaca tggcaacccg ctacaccccg ccgccgtact cacagctgaa ccatgcgctg
1441 gggttggcgg tgccagcaga ggcggcggga gaggcaagtg cggcggactc agctctgtcg
1501 gctgccacaa ctgctgaagg aggagaagcg caggacgatg tgaaggaaga tgatgctgcc
1561 gctccctctg ctgatgccga tgcatcctcg tcgaatgaca agccaagctc ttag
//
LOCUS LmHel61 1635 bp DNA 5-APR-2005
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|306074504|
COMMENT VNTDBDATE|370956872|
COMMENT LSOWNER|
COMMENT VNTNAME|LmHel61|
COMMENT VNTAUTHORNAME|Larry|
FEATURES Location/Qualifiers
sig_peptide 1..135
/vntifkey="94"
/label=Mito\signal
BASE COUNT 334 a 465 c 494 g 342 t
ORIGIN
1 atgcggcgtt ttgcaagtgc cttgtttggc aggtggggtg ccgcacagtg cggggtggtg
61 ccttttcggg ctcgcccgac tcttttgccc atgatgagca gggtgcgctg cttctctgtg
121 attagtgctg cttacgaggg attggccccc gcaacgagct cgaatatcgg cgacccgcat
181 gcgccaccga agacaagggc gtctgcagtg tcaacagagc acgatgtctc tatcacggac
241 ggcaatggtg atcgtgtcga cgtcaccccg ctaaactcat ttgaagagtt gcgcgatgca
301 ccgcgatggc tggcggaggg gttgaagacg ctcaagtacc cttccacgac tgacattcag
361 aagttcacaa tacctttgct ggccaacggc cacgatgtta tcggacttgc accaacaggc
421 tcgggaaaga cggtggcgtt cgcggttcca gccctggcgg ggctcaagcc caaccccgat
481 gggacgccgt ctgttctggt tctagctccc acgcgggagt tggtgcaaca aaccaccaag
541 gtgtttcaga accttggatg tgggcaggtg cgcgtctgcg aggcctacgg tggtgccccg
601 cgcgatctac aggcccgcca tcttcgcaac ggctgcgacg ctctcgttgc ctgtccagga
661 cgactcaagg actttctcga cggcggcgac gtgtccatcc gtaatctgtc gtttctggtc
721 tttgacgaag cagatcgcct tctcgacatg gggttccagg ttcacttgga tgagattatg
781 gcctacctcg actcagcctc acatccgcag acgatgatgt ggtcggcgac gtggccagag
841 tcggtgcaag cgatggcgcg caaatatcta tccgacgatc gtgttttgat tcgagccggt
901 acggccggcg cggggcttca agtgaatgag cgcatcaagc aagagcttat cttctgccga
961 accttcacag agcgcattga gaagcttggg tcgttggtcg aggatgggac aatcgacgac
1021 aacaaggaca agctcatcat ctttgtggag cgccaggcgg atacggaaaa cacagccagg
1081 gctttcagcc accggctagg aatcgataca cgctacgtag ggacaattca cggcggtctg
1141 tcgcagcggc agcgggacag ggtcatgagc atgttcaaga gcaaccacat tcgccttctc
1201 gtcgcgaccg atgttgcttc tcgaggccta gacattcctg atgtaacgtg cgtggtgaac
1261 tttcaggctc caaaaaccat tgacagctac tgccatcgca ttggccgcac cggccgcgcc
1321 ggtcgcaccg gcacggctta cacatttctt ggcgaagagg acggtggcct cgcaacagaa
1381 ctcgtcaact acttgactcg ttgtcatgtt actgccccaa agaagttgac gcagctcgcc
1441 gagagctacc agcatcggat gcagcagcag aggcagcgct tcaggcgtgt cgatcgagga
1501 ggtttctcca gaagtgagaa cagcagtggg ttcggccgcc gccgcagcga tcgaggcggt
1561 tcacgcgagt tcatgcctcg caggcccgac tcgcgcaagc gcgatgacga tcttccgtcc
1621 acgttggact ggtga
//
LOCUS LmjF16.033 1164 bp DNA 2-JAN-2009
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|506181756|
COMMENT VNTDBDATE|506181756|
COMMENT LSOWNER|
COMMENT VNTNAME|LmjF16.0330 hypothetical protein conserved|
COMMENT VNTAUTHORNAME|Larry|
BASE COUNT 229 a 364 c 356 g 215 t
ORIGIN
1 atgcacgcca cgcttctgcg cagtgggata cgcacggtgg tgccgccccc aaaggcctcg
61 ccgctgtacc gatttcttcg cgaaagtacg gcgcagagcg tactcgatgc ggacaactct
121 acgaagatgg cgagtgagcc cctggccagc gtgctgccga aagggtcctc gacggagagc
181 cacgccttgc tctcatcgct gccggtgggt gtgtttgagg gcctgaatcg acatgtctgg
241 gtggatagta agcgcagctt ctgctacctc tgccaggaga cagtgggtaa cgttacaatc
301 cacagcagcg accgcgatca caccagcatg ctgtttttcc ttctgctcta cacggcatac
361 ccgagacacg acttgttgac cgaggcggcg cgagccccga cggcaggaga gagggcagcc
421 gttgtggtga aagatgggag ctgcgcctca caagcgtctc tgtcggccga gcacagcaga
481 gccgcgggtt tgcctcggcc gatgtccgcc tcgagaagca aggccgtccc gctgttcacc
541 cctaagcatg tcctcagcgg ggcgaaacgg gactttccat ctctcttccg ctacgccacg
601 gactgccgca ccacggaccg cctacacgtc gtcgacgatg ccgtgcgccg tgccgagcta
661 gaggcgctct tgctgtacct ggcgcaccca ccgcaccagg cgctctcgca cgttctgcaa
721 ggccaaagcc cgaatggata ctggtacaac ggggagcgca tgtggaaggc gcacatcagc
781 cgcatcgtcg cacaactgta cccacccatg tcggctggca tgatgaccaa cttcacccag
841 aagtgctggg gccgcactaa cggggagcgg ctgtacgacg cactctgcct gcaccgcatc
901 aaggcctacc acggctgggg ccccttcgag agcaaggagc gcaaggcctt ctttctaagg
961 catctaatct gggagctgct ctgtgtcgag gtccgcgacg aggtatcaga ggaggcaaaa
1021 ctgttgacgt cgctggctct tcggcggctt gcgttcgaga tggtgttcct gcagtcaatg
1081 gactacatgg atcgagtgca gcgtgtgcac gagctgctgg gcagcccctc gctggaggag
1141 ctcaaaaacc ttaacgcgct ctga
//
LOCUS LmjF20.095 2112 bp DNA 2-JAN-2009
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|506182029|
COMMENT VNTDBDATE|506182030|
COMMENT LSOWNER|
COMMENT VNTNAME|LmjF20.0950 hypothetical protein conserved|
COMMENT VNTAUTHORNAME|Larry|
BASE COUNT 400 a 676 c 701 g 335 t
ORIGIN
1 atgacgggaa aggcgggtgc gcaggcagcc attaccggcg ctgcgcgttg ttgctcgaca
61 acggccgcca atgcagcggt tggtggtgcc gcggcgccat cgacggccac gcgccccgtg
121 cgtcaacttc gtctggcggt cgtgcgtccg gacatccttg atgattgggt cccagagctg
181 aacgacgtcg ttgcgcatca gatctcgtgc gatgaggcca caacactggt gtggtggagg
241 tgctcttgtt gtcaacagcg gtaccagtgc actgtgcaaa cgcgcgtggc ttgcgggcgg
301 acagcgtgcc cgcattgtgg cggcggcatc agcgcagcag gcgacgcctc tgccagcaac
361 tcggcagcaa tctcggtaac ccacaaaccg caagatgtgg cagcgccccg aggggatgtc
421 ggagagacgc tggacaagac gcatcctgat ctcgctgccc gctgggatgt cgcccgcaac
481 ggcgcgctgc tgccctctca tgtgacggcg tcaagcacac ggcaagtgtg gtggcttcct
541 gccgcaaaca cggcgccgct gccgtcccca gctgcacagc gaagctttct ccgaccggtg
601 tttgcgttcg tgtacgactc cgcgagcccc gaggagcagg cggccgcgac ggcggcgatg
661 gagtggcggc tactccacga aatacgtcgt gtcgcccaca ttgaagacgc agagaaggcg
721 ggtgtcatcc cggtgacggt gcgcagcggc aagaccgggg caccgcacgc tgctgcatgg
781 ctgaccggct ctggcgacgc ggcagccgcc gactctcgac cgtctgtggc cactatggcg
841 gccgcagacg tgcgcgtggt tgcgtgtatg tggaaggacc gcatatcggg actggcaaag
901 ccagaaaacg cggaagacaa caaatttccg caaagttcgg cgtcgcgccc cgccggcgtc
961 ttcccacgcg aactgtttgc gcattcgccg accacagagc gcagggctgc aatgtcagcc
1021 gagtcggcgg ccgcgtcaac cgtgcgggtg gccttgctgg gtcggtattt cgagtttgtg
1081 tgccaccagc ggagaggcgg cggcagcagc agcaaagagc gaacgacatt gacgcctata
1141 ctggcaagcc tcgcaccgtc gagttccact gctgccgccg ctgcatcggc tgcggccgag
1201 ggcacgtccc cgtcatggac cgactttttt gcgttgacga gagactccgc gctgccgaag
1261 gggtacatcg acccgaacgc agccctttac ttcccggacg ccgcggacgt ggcggcatcc
1321 ggtgcgcagg tgacagcagt atcagaagcg acgaaggtgg actcgctgcg actgacggca
1381 tcccagatta gcgacactgt tcttaccagg taccctcgcc gtcctccgtc gcctcgtctg
1441 cgtgaggacg acgtgatgca agcgacgccg cctatgatgg gcgccagcgc cgagaacggt
1501 tgcagggacg tctccgcgat tcaccaggtc aagcaccacc aactgaggca tcacgttcac
1561 atgccgtttg ggcacaccac cacggtggcg gaggaaaatg cggcgaagct ggcagccgag
1621 tacgacgtcg atgatgaaga cgatagcggc cgcggcatgg acagcagacg tgcccgcacg
1681 acagacaacg cggccacgtt cgccacagag ctgcgtgggg cgagcaggcg ccgcggcgaa
1741 gctgcaacgg cggcctccct catcgactct gccattgctg ccctcggtga ggccttctcc
1801 gtagcagagg caaacagcag cagccgacgc taccatcgtg aagcgcatcg tacggcggcg
1861 ctgagtgacg agttgatggc gtcgagcagc gattctgcac gacgcaccgg cacacgtcct
1921 cgccgctttc gcctctcact acctcacgag gcgccacagc agatgaggcg gcggaacgtg
1981 gcggccgaat tgatcgccgc agacggcagc ggtgcggtgc ggccggcaca ctttgaagcg
2041 ccgcaaacgc cgcgcaaagt ggcgcggtca cgtcgcgcca accaagaggc ctcaagtgcg
2101 gcagcccaat ga
//
LOCUS LmjF31.064 3189 bp DNA 2-JAN-2009
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|506181935|
COMMENT VNTDBDATE|506181935|
COMMENT LSOWNER|
COMMENT VNTNAME|LmjF31.0640 hypothetical protein conserved|
COMMENT VNTAUTHORNAME|Larry|
BASE COUNT 615 a 992 c 963 g 619 t
ORIGIN
1 atgcgtccat gcatcggtgc gcgtaacaca atgcacgctc gcatacacgc cagcgcgccc
61 cctcctctct ggtgcactcg tgcctttctc tccatccgcc ccttcctctg tcccccctcc
121 cctctctcac gctcctatcg cactgatgcg ctgctgtgca cgcttctctc cttcctgtac
181 ttcacacaca cacacacatg cacacaccgc tctccgtact ctctgtggcc tcgatggaac
241 cgtcgacgtg aacatgccac tcattggcac agtttactcg ccggaaggcg cacgccttcg
301 tcagcttcta tcggtactcc cccacctgcc tgccagcacg tccgccacat cctccctgcg
361 ttgactcact cctctgtgtt cttcatatcg gttgcctgct ccggtggatg cgaaatgagg
421 actcagcgac tctgctctca acttgcaacg gcgcttcact cttcttttgt gcgtggcagc
481 gctgcggcag cggccgcagc ggtttgcaca gtcttacgac acgccagcgc ggaagctgtt
541 ctagcgcagg aggagcatgc taatgccctt tacgacgaca gcaaggatgt gtcaccggca
601 gccgaccagg agcatgcaca agacgctggt gatgaagagc cgcaccgggc ctcactggtg
661 tctcaactgc tgccatatgt atacggtccc aggggtgtcg cagacgacgc gcacctttcg
721 ttgcccatcg accacgtcgc gctgcgacgc atgaagaaaa tcatgaatgt gaagagcaag
781 cacgatgtga ccaaggcgct ttacaacgtg cacctgcttg agacgccgga ggactgcatc
841 cactacgtga acctgaccgc ctcctacatt cgacaacaag cacggatgga ggagcaagcg
901 cagtccccat ctcttgcaac gcgtcagcgt gcagcgtacg tgcagcggca gctgcgaggt
961 gttcgactca gcgggctgga gaagagcacg ctgcttagga aggcctgcac cctcgttgag
1021 gagcgaagag tgccgctcgt ggtcgcgagt cggctgctgc gcttccgctg gcctggtgac
1081 ctcgccaccg tcgcttgcgg cgtccgtcaa ccctacgtaa tggatttgat ccgcagctgg
1141 gccacagagg cgctgcagca gaatgagctc gagccgcggg acgcgcgcgc gctcttgagc
1201 aactgtgcct tcgccttgaa gtccgctgtg cgtcgacgca cgaagggcgg ggcggcagag
1261 ccactcagcg acatctcatc cttcatcggg gcacttgcga tgaaggccag ccaagacgca
1321 aactcgcccg ccaaggcgga ggggttgatt ggcctcatgt ggtcggtaca cttgacgggg
1381 tgtccagcgc cagcgagctt ctgggacacg atggtgcagc gtgtggttag catgaatgag
1441 gccttggagg gggagtttgc aagcagtgca gacgccgcag catcggagaa cggcacgccg
1501 acctccgccc acgccctttc cacttctccc gcatcgtcgc cgtctaccaa agcgccgcgc
1561 gcgggccact tcttcagcac tctctcgacc cgccagctct accgcttcct catggtgctg
1621 aagctggcga agtgggatgg caacccaacc gttctgcatc ggctggcaga ccagacgctg
1681 cgtaacgtcg ccttcgagtt ggaagcagcg aacttcgacc ggcatgtgag cggcgacagt
1741 gaaggcgaga gggcggtagc ggcggcggcg aagccgagta tcaagccatt tgctgttgtg
1801 aacgccgcgg aggtgcatct gggcatggta cagcaaaagc ccgtgcggtt gcccaagtca
1861 gtggtggcgg gccgcatccg gcaggtggca gacctgcatc cggacgagtt ccttgagctg
1921 cttcacctcg ccggggattt gggggttcca ttcagcgtct ctgcaacccg catggtggat
1981 gagctcctca ttccacttgt gccgcacctc aatgctaagc agctcattgt tctcctccag
2041 gttgtgcgtc acacgcgaag ccagtcctcg acgcttatgc aggtggtgat ggaccgcctt
2101 gtcgagcgtg gcgccgccgg cgcttacgcg cttcctctag caaaggcgac tgtgaagact
2161 gcggcgaagg caccggccgt attccagagc ttgcgcatgg acgactttgt tgaactcttc
2221 acgaccacct gcgaggcgca gcatacactc gttcgggcag cggaagtggc cgcgatgggg
2281 gacatcctct acgccctcag caggcgctac gaagagacgt cgctgcaagg ccagcgcatt
2341 cgcgaagtgg tgaatcttct ctgcgcgcag gcggaccggc tcgttcagct gcaagtggcg
2401 tctagctcga tagcagaccg gctgctggag tgcaccgttt tgctgcgcat gcgagccaat
2461 aagatgcagt acccagccgt gcaggagctg ctcgcctcca gggcagtggc agtagatcaa
2521 gaggagcggt gccgccaggc ccgccaagag cgggccctga agtatgtcga gacgctcgca
2581 gcaggagcgg cggaaggagc gatatcttct ccgtgccgcg aatcgctgaa gtgggaaggg
2641 ctctccgaag gggacctccc gcaggtggcg aaggctgccc tttccgtgta tggtgaattc
2701 gtgtacatat tcgagcgcat ggtcaccgtg aaggcggtac tgacggcgaa ggactttgag
2761 ttgtttgcat tcaacatcaa gaaggcgggg ctctacagca tcttgcaagg agcccagctc
2821 ttccaacagg gacacttcga ggccgacgtt ccgtacacaa cgcccgcctc ccaagcagcc
2881 gcgcaggggc tttcgaggac tatgccggcg tggatggata aaacggtcac aaacgctgtg
2941 ctcgccaagc tgtccaacag ccgcatctcg tcctcagaca cgggcgacga ttttctgaag
3001 gtgctaggcc acgtacactg cgatgcggcc aaggtggacg ccgtgattga gatgatggcc
3061 aggtcaccac tgcgcagact gcagcgccag agaccagttt ggttgtacat tgccgagctg
3121 gcgcgtcgct ttggctccga ggagacgaag gaggcgatgt cagcgtacct gaagaaggcg
3181 ctgtactga
//
LOCUS LmLC1 3255 bp DNA 22-JUN-2003
SOURCE
ORGANISM
COMMENT Bob had trouble cloning this.
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|273858572|
COMMENT VNTDBDATE|306081810|
COMMENT LSOWNER|
COMMENT VNTNAME|LmLC1|
COMMENT VNTAUTHORNAME|Larry|
COMMENT Vector_NTI_Display_Data_(Do_Not_Edit!)
COMMENT (SXF
COMMENT (CGexDoc "LmLC1" 1 3255
COMMENT (CDBMol 1 0 1 1 1 0 0 0 0 "" "" 0 0 0 0 (CObList) (CObList) (CObList)
COMMENT (CObList) -1 "")
COMMENT (CDocSetData 1 1 0 0 0 0 "MAIN" 1 1 1 1 0 0 1 1 1 0 10 10 4294967295 50 0
COMMENT 1 0 (CHomObj 1 0 0 3 100)
COMMENT (CWordArray 47 49 50 48 51 52 81 0 1 3 4 82 5 83 2 6 8 7 9 61 10 11 12
COMMENT 13 14 15 16 17 18 19 84 20 85 21 22 86 87 88 23 54 62 24 89 25 26 55 91
COMMENT 27 28 29 30 31 92 32 34 35 33 53 58 93 56 94 37 57 38 36 39 40 41 42 43
COMMENT 95 44 59 99 96 97 45 100 46) (CWordArray)
COMMENT (CStringList "NheI" "XbaI" "BamHI" "NcoI" "NotI")
COMMENT (CStringList "atg" "gtg") (CStringList "taa" "tga" "tag")
COMMENT (CObList
COMMENT #0=(COligo "7131" "CCAGCGCGGTGGCGGGATCCATGGCGTCGAGCTCGGCTG"
COMMENT "5' oligo Exp 666" 0 (CStringList) 0)
COMMENT #1=(COligo "7114" "CAGCCGGTGGTCTTCTCGTCCATTCTAGAATCGAAGCGGTTATGGTG" ""
COMMENT 0 (CStringList) 0)
COMMENT #2=(COligo "7113" "CCAGCGCGGTGGCGATGGCGTCGAGCTCGGCTG" "" 0
COMMENT (CStringList) 0)
COMMENT #3=(COligo "7112" "CCATCGGGCGCGGATCCCCATGGATGACGATGAAGA"
COMMENT "5' primer - inserts NcoI site downstream of Bam site" 0
COMMENT (CStringList) 0)
COMMENT #4=(COligo "7111" "TCTTCTCTTTTCCATTCTAGACACGTACACGACTAC"
COMMENT "3' pcr primer - changes Bam to Xba site" 0 (CStringList) 0)
COMMENT #5=(COligo "7110" "AGCTAACCATGGCGGATCCATGACGATGAAGA"
COMMENT "5' primer - insert NcoI site" 0 (CStringList) 0)
COMMENT #6=(COligo "7109" "GGCAGTGAGCGCAACGCAAT"
COMMENT "Antisense primer for PCR amplification of a region of pSAP17" 0
COMMENT (CStringList) 0)
COMMENT #7=(COligo "7108" "ACGTTGCCATGGTCCTACGCCACTGTACCTCTACGT"
COMMENT "Sense primer for PCR amplification of a region of pSAP17" 0
COMMENT (CStringList) 0)
COMMENT #8=(COligo "7107" "CCTCACTAAAGGGAACAAAAGCTGGAGCTCCACCGCGGTGGCGG"
COMMENT "Antisense primer for PCR amplification of a region of pSAP1" 0
COMMENT (CStringList) 0)
COMMENT #9=(COligo "7106" "CCTGTCCCCGGGCCATGGGGATCCATGCACGCTC"
COMMENT "Sense primer for PCR amplification of a region of pSAP1" 0
COMMENT (CStringList) 0)
COMMENT #10=(COligo "7105" "GATCTCGTCGTGACCCATCGCGATGCCTGCTTGCC"
COMMENT "Mutagenesis primer - chnages G4454 to C in pSAP1 - destroys NcoI site"
COMMENT 0 (CStringList) 0)
COMMENT #11=(COligo "7104" "CTGCCCGCCACGCAGCGATGGCCGCGAAGG"
COMMENT "Primer for mutagenesis - changing a C 7072 to G in pSAP1" 0
COMMENT (CStringList) 0)
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COMMENT (CWidget 1 (1 #56# 1) 1 2 0 0 #103# 25303536
COMMENT 100) (LOGPEN 0 6 10053171) 8 1 2.85232 1.9
COMMENT 0.082322 1)
COMMENT #152=(CLabel
COMMENT (CWidget 0 (0 0) 1 2 0 0 #105# 25086384 100)
COMMENT (LOGPEN 0 0 153) 1
COMMENT (LOGFONT 27 10 0 0 400 0 0 0 0 3 2 1 18
COMMENT "Georgia") 2.53336 0.555556 128
COMMENT "{\\i Not}I (1776)" "@N (@S)" 5 0 0 2.9455
COMMENT 4.50909 3.23077 0.641026 #151#))
COMMENT (CObjectList))
COMMENT #153=(CGroupWidget
COMMENT (CWidget 2 (10 #52# 0) 1 2 0 0 Nil 3408312 100)
COMMENT (CObjectList
COMMENT #154=(CScratch
COMMENT (CWidget 1 (1 #52# 1) 1 2 0 0 #103# 432 100)
COMMENT (LOGPEN 0 6 10053171) 8 1 3.66369 1.9
COMMENT 0.082322 1)
COMMENT #155=(CLabel (CWidget 0 (0 0) 1 2 0 0 #95# 0 100)
COMMENT (LOGPEN 0 0 13408563) 1
COMMENT (LOGFONT 27 10 0 0 400 0 0 0 0 3 2 1 18
COMMENT "Georgia") 2.53336 0.555556 0
COMMENT "{\\i Nhe}I (1355)" "@N (@S)" 5 0 0 -4.79772
COMMENT 1.97573 3.30769 0.641026 #154#)
COMMENT #156=(CScratch
COMMENT (CWidget 2 (1 #52# 2) 1 2 0 0 #103# 0 100)
COMMENT (LOGPEN 0 6 10053171) 8 1 1.28933 1.9
COMMENT 0.082322 1)
COMMENT #157=(CLabel (CWidget 0 (0 0) 1 2 0 0 #95# 0 100)
COMMENT (LOGPEN 0 0 13408563) 1
COMMENT (LOGFONT 27 10 0 0 400 0 0 0 0 3 2 1 18
COMMENT "Georgia") 2.53336 0.555556 0
COMMENT "{\\i Nhe}I (2587)" "@N (@S)" 5 0 0 10.2478
COMMENT 1.97573 3.46154 0.641026 #156#))
COMMENT (CObjectList))) (CObjectList))
COMMENT #158=(CGroupWidget (CWidget 14 (16 0) 1 2 0 0 Nil 3408312 100)
COMMENT (CObjectList) (CObjectList))
COMMENT #159=(CGroupWidget (CWidget 12 (0 0) 1 2 0 0 Nil 3408312 100)
COMMENT (CObjectList) (CObjectList))) (CObjectList)))
COMMENT (CSeqView 10 10 (CObjectList) (CObList) 1 (CObList)) (CObList) 0
COMMENT (CStringList) 25641624 24622188 (CObList)))
FEATURES Location/Qualifiers
CDS 1..3252
/vntifkey="4"
/label=ORF
sig_peptide 1..378
/vntifkey="94"
/label=Mito\signal
CDS 379..3252
/vntifkey="4"
/label=Lm\LC-1\ORF\(-mitosig\and\stop)
BASE COUNT 542 a 1081 c 1083 g 549 t
ORIGIN
1 atggcgtgcg cgctcgcgct cgcgagaagt cgcgtacgct ctacacgcct ttgcttgcct
61 tacacgtctt ccctcttctt ggatgcctat tacattctcc gctgctctcc gtttgtgccc
121 ttccgtgttg cactctctta cacacacaca cacacacaca cacacacaca cacttgcaaa
181 gggagatcaa tgctgccgat ccgacgctct tcgcgtccct cgctgacgtc gctgcccgtg
241 tgcggccggt ggcgccacgt tgtgcacccg gttcgttcgg cattcatgca caccgccgtc
301 cttcgacaac tcagcacacc atcgactcgt ccctctggca ccgcaaacgg cggcttcggc
361 agtagcggtg tccgtgacgg cagtgcacca gctcctccta gcagaggtga cggtgctgcg
421 acagcgccgc agcagcggtc gtcgcacggc gtgagctccg agctctgctt ctacgagacg
481 tttatcttgt ccgatgtcga cgtgcatctt gccctcctcg aggaggcgca ctacaaacac
541 ggcgtgtggc tcaacgtgcc accgcagctc gcgccctcct tcccgaacgt cggcccgccc
601 gccgtgccgg agcccatcta cccatcggca cagcgggagc gactagcggc gatgacggca
661 gtgcagaaca agcgcggccg aggcgccagc ggcggcggca gcacgacgga tgcggagctc
721 atagtggagc cgtcgtgcct tgcctaccgc cccacccacg acccgccgcc cttctccacg
781 accggcacgc gctcgctaag gattccagag caaaggcggg cggcagcaga agcagccgcc
841 ccgggcgcaa gcgacgccgt cccccgtgtg cctccgtctg caccgttttc cgtgacagcg
901 tcaacgggag aggcgagctt cgcggaaggc accaccacta ctacaagcag catgcgtgcg
961 gaagtacaga cagttgccgt acgcatgccg gtggtcccgt caatgctgta ccactgcagt
1021 gcgtgcagtc gcccgtttag gcgacgcgag gccgcagagg agcacgtgca gcagcgccac
1081 gagccgcgcg gcaactgcag cggcgtcagc gccgctgcag ttgtggtgga gggtccgggg
1141 cctggtgaga ttatcggata cgaggagaag gccgtcgtcg tggcggccac cacgacggcc
1201 accaggacgg ccgctgctgc ccgcgtgaca agttctttgc caatgaaagc agcagcgaag
1261 gcgaaggggg tggaggcgag cgctgaagtc gcgaccgcca agggcgtcgc ctgcgcctcg
1321 agcactgtca agccctccgc ctttgatctc gctgctagct accgcgcgac accacgagtt
1381 gaccgcccgt cggacgatct tatcgacgaa ctcctcgatg ccgtctggga cgacgtggcg
1441 ctggcgcgag atgacatcgt gaagccgtct gaccttccca caacacgagc cgaccgtttg
1501 caacacccga agcggcgtta cgacagctgc caagggcgct gtttcatccc cagtgtgctc
1561 atcgtggagg gcgtcgccga caaccgcgct gagctggagg cggcggtgga gcgggccgct
1621 gtgcgagcca cgccagatgg cgccgcgcca ggcatcaagc gtcggccttc gtctctgttt
1681 tcggtgtttt cgccatccac gatggccccc cggctgctcc caacgcagcg gcgcaacgcc
1741 gatggcacgc tcggtgctgg cggcgccgat gccgcggccg ccggcggcgg catcggcggt
1801 gggactcttg gggcggcacc gacggcgcag gagttgtctg tagcggagct cagccgccac
1861 tacccgaacc cgttcggcga cagcccaaac gctgtgctga tggagttgga aaaggagccg
1921 atcaacccct tcatcgacct cgagggtcag gcggctgagg tggccgccgc ggcgcagtcg
1981 ggtgcggcag acggtagcac cgctgacgac gctgtctctt ccccggccac gaaggagatg
2041 gagtggctgt cgcggtgggc agcgaggccg tacgcgtgtc cgctgtgcca gcgacgcgcc
2101 ttgccagact tgatgaaaat catggcgccg ctgctgcccc cgtcattggt agcaggcagc
2161 gaggcagcca cctccgcggc gccgactgcc ggtgtatacg gtgacgttca aggagccagc
2221 ccacatccga ggtctggtac gaagggggcc gcttctactg ctgcagggga aacgtcggcc
2281 gcgactgcag gcgcctccac gtcgaggcca gtagagggtg tgcccccctc aggctccctc
2341 gaggacgaac ccttggttgc ggatgttgag gcgtggagct ggtacgccga gcgggtgccg
2401 cgcttccgac tactggactc cctcgaagac cacttgcagt cgaagcacgc cggctactgt
2461 ggcggggatg acgaggcagc ggctgcactc gacgatgacg atggctgcac tggcagagac
2521 gggggcgaca ccctctccga ggcggactgg cagttcctct accgcgttgc caggcaccaa
2581 cagctgctag cgcgagccga gttgctggcg gtgcagcagg cgtaccgcgt catgtgcccc
2641 aagcggcaca gcaccgctgc ggagtccttt agctccattg agagcgacgg cgccgacctc
2701 ccaaatcatg tcggcggcga tgccggcaag gacggtgccg cgaacgcggc gattcacggc
2761 gcggtgggtg gcgcatcggc gggtgggtcg cccacgtcgg ggtccgccat cggtgccacg
2821 actgccgatg gcaccgatgc ccctcaggtg cacgtgcgat cggctgtgaa cacggtgctg
2881 atcggcacgg tgcgggatgt gcaggagggc ttccttggcg cgacccgcat tctgcagtac
2941 gttctggcag tgcggaacac ctctgcggag tcgttgggct ctgcatccgc agacgcgatg
3001 gggagccacg tggacgccgg caacggagag gacgaaggcg caggcgtgga cgaggacctg
3061 atcgttgtgc gctgtgtcgg cgacctcgtc cctgtcgcgc tgctgaagca gcaggcccgt
3121 ttgggctcca ccattttcgt tgccgggtcg ctgcgtctga atcgcaacgt cgacacggtg
3181 tcgcgacggt cgcatgcgta cccgtatgtg caggtggtgc cgccccttgg ctgcgtgcgt
3241 gtcttggagg cgtag
//
LOCUS LmLC-4 1800 bp DNA 12-AUG-2002
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|269613470|
COMMENT VNTDBDATE|274806832|
COMMENT LSOWNER|
COMMENT VNTNAME|LmLC-4|
COMMENT VNTAUTHORNAME|Verdi|
BASE COUNT 318 a 536 c 579 g 367 t
ORIGIN
1 atgacgatga agaggcggat cggtgtcttg gccgctgctg cagcgagccg ctgcgcgctg
61 cgccggctgc accacgtgtc gtctcggccc ttgcacgcgt cgggtgctgt cgcctccgcg
121 aaaggcgcct caaatgccgc tctgttgggg gctgtgcgga atcaaagtgc cgtcccggac
181 cggcgcttcc actgcagcgt ttgcaaaaag tcgtttcgct tagagatggc ggcaaagctg
241 caccttcagc aggtgcacag cggtgagggc gcggtggagg caggcgctgg tcccggacag
301 ggagaggatc aggcgtcgca gaccccggtg ggtgtatttc gtaatgcgcc tccgcaggca
361 ccaaccgtcg ttacaccgat cgtgccagac actcacgagc gcgctgcgcg ccgtgagaag
421 ccggcaccaa agccacttca ccaagccgaa cgcgaggtgc caggtattgt gatggaaaag
481 atgctctctg tatgggatga cacaggggtg aagcggatgg gggatcagtt tgttcacagt
541 agcatggtaa tgcgcgtgtt tgccgctcgc ccgtctgaca gcgccgagcc gttgtacggc
601 gtcatgaatc cagagggtga gaacccgttc gagggtggcc cgtatgcccc cgacgtggct
661 ggttctatca cgaaggacga ggtcaaattt tacaacatcg gtataggtga cgcgtttgcg
721 ctggcgtgtg gcgagtcttt cggtccattg cgtcctgctc ggtgcccaaa cccattcctc
781 cgaaaactag caaaggatgc tgcgaaaacc gccccaaggg tggggttggc agagcagcaa
841 acggcgccgg taacaccgtt cggacagctc cccatgtttg ggcagactcc gtctcctgct
901 acggccccag ctcccagcgc cgccgaggaa ccgtcgacca cgatcaacag cgtcgtctct
961 tcccccttcg ccgccggcgc caacgactcg ccttttgctg ggacgacgga ctttccgttt
1021 gctgggcaag ggctctctcc gttcggatcg gtgaaggagc cagcagatca ggccgctgcc
1081 gagcccggga ttgccgcgcg atcggcggcc tcgtcggagg cgccggcctc accgttcgtg
1141 gctgcatcta gtgctcttcc tccgtccccg ttcgccgcag ctccgagccc tttcaccgaa
1201 tcttctgggg cagcagcccc gtatgctgcg agggacgcag ccgcggtggc aagcggcgct
1261 gagggtcatg acgccgcctt cttttcctct tccgccgcgt cttccgtgag cgcgccggct
1321 gaggtggcgc ccgcaccgac gcatgtgtgt accgtttgca agaagaactt ttcgacgtat
1381 gacggccttc gaatgcatag caaggccaag catggggagg agctgccgaa ggggcggcga
1441 aacgggaagc gcgaggttcc ggacttacca gctttcattc ccagtccggt ggacctcacg
1501 atgacgtcac ccttcggctc gtcggcgcaa cggtcggcgt ggacggaagt ggagctgaaa
1561 ccgtacgcgc agtctgtgag taacattact gtggcgggcc gcgtgctgga tagcgaagtt
1621 ttgagtgacg gggcgttgct tttgtcgctt ttcgtccgcg actcggccga aagcgagtct
1681 gaggtaattc ctgttcgatg cacctcagct gactttagaa cgcttggcag aacgctcgtg
1741 tatggcgatc tcgtgttagc ctgtggttct ctgcgcgttt tgccatttac ggataaataa
//
LOCUS LmLC-5 2085 bp DNA 22-MAR-2005
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|274293539|
COMMENT VNTDBDATE|369682785|
COMMENT LSOWNER|
COMMENT VNTNAME|LmLC-5|
COMMENT VNTAUTHORNAME|Larry|
FEATURES Location/Qualifiers
sig_peptide 1..69
/vntifkey="94"
/label=Mito\signal\(Mito\Prot)
CDS 70..2085
/vntifkey="4"
/label=orf\-\mito\signal
primer 70..89
/vntifkey="27"
/label=6732
primer_bind 2066..2085
/vntifkey="28"
/label=6733
BASE COUNT 368 a 648 c 666 g 403 t
ORIGIN
1 atgtgcgacg tctgcggcag tgtctgggcg cgtgtgtctg tttcgctctt tggaccttgg
61 aagcgcggca tgcctgaatg cacggaggag ggtgccctcc gatacgcatc aacacgcgag
121 tgtgactctc cggtctctca agtctatgcc gtctcgcatg ttttgctctg ccgcttacgg
181 tgtgttggtg tgtgcgcaag tgccctcctc gcccgccgca cgcaccacta tgtgtttact
241 ggcaccgtca tcgtcttttc tgcggccctc ctctctttct ccccaacacg cgcttgctgc
301 tacgtgcaca ttcaagcatg gaaaaggaaa cccgtgaggg acgcaaggaa cgatacgact
361 gacgggtggg ctagggggct catgcaggct cagctcggga gaggacatgc ggcactgctg
421 cggctgtacc gcgtcgtcgc cgccctggtg tcgacggcgc cgatctggcg ccacccggcg
481 accgctgcca aaggaccgag ttacagcgcg gatgtgattg caccacgctt gagtttcgcc
541 ggaaaccggc gcgccaccgt cttcacctct tcatgctgcc gccttactcc tgcgcgatgc
601 atgacgacag tgccggagag cacatgcgcg gcatcgtgtg agtcgcagct ttgtctgctg
661 tgcgacaccc cctacacctc ctggacggag cactcccgcg agcatgcgca cgtggcgcgc
721 tcggtggtgt gccgtttctt tgtgatgcca gagagaagcg agagcatcat gcagcaccta
781 gagcggcaca tcgctctgga cctcaaggag gtggatgccc tcacagaccg caaggtaggg
841 cggcgccgcg agcgtctcct cgcgggcctt gtgcaccttg tcgagaaggg cgtgctgcgg
901 gatagcatac ccacgctgcc gttctcaacg ccggcacgcg ggggaactga caagggaagg
961 ggtgctggca ttagcggcgt gacgcttggg gtcgacgctg acctctttct cagccgcgtc
1021 ctcgtcgggg aggcgttcct gcgccgtgag gtgcttgacc gatgcgcgcg gctcatgccg
1081 tccctcacag cgatggagct gaacagcgta gtgacgtact tgacgtcgac gcgtcaaatg
1141 gctcgcatct ttgacgagct gtcgctgata gagcttctcg tgacgcgttc ggggttggaa
1201 agcgctcccg cgaacgtgaa caccgccacc gctgctgcca ctgccgccgg aagagcggca
1261 gagtcagcga gcgtagagcc gctgagcgag acagctgcgg cacctttgcc agacagcgac
1321 gcgagcacag agtcgccacc tgcgcatcag ccctgctctt ccacactggc cgccagtctt
1381 ccctctcccc cacgctggag cctgtcccgc gaggacaagg tgtacatcat gtgcgcctgt
1441 ctcggcgagc tgcaccgctt tcacgagcag gagcgaccgc gctctgtcat ctccaaggca
1501 gcagcagatg ctattgtgct gaacgtgctt gccggccacg ggcgcgagaa ccttgtgtcg
1561 gagttggtgc atgaaacatt gcagcgtatc gtggacgagg ggacggtggt ctggcggcag
1621 catcaggagg atgtgaagcg gcgcggtcgt tcatctgaag caaacgtggc aggggcagct
1681 cgaatcagcg cgcggcgggc acctcgcacg gacagtaccg tatccgagga cttgtgctac
1741 gtgcgcactg caccgctgcc gtcagcgccg tcaccgcggc cggcgtctca ggttacactg
1801 gatagcgcag cagcggagca gctcgtgtct tcttacttgc ccttcaatga tgtcgatcaa
1861 cttagcggcg ccgagactga cgctgtgaaa gcgacagcag aagcgccgtc gaggtcgagt
1921 ccggaccgca cctgcactac ttctcccgag tgcatttcag tgctgcacac ttcggagaag
1981 gactgggggc cgctcacggc ggagctgcgg aagcgtgccg aggattggaa tcggctaccc
2041 tttgtgccta gcacacccga gctaaaagcg tcgaagatgc cgcgc
//
LOCUS LmLC-7B 1506 bp DNA 14-MAR-2005
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|352924518|
COMMENT VNTDBDATE|368973611|
COMMENT LSOWNER|
COMMENT VNTNAME|LmLC-7B|
COMMENT VNTAUTHORNAME|Larry|
FEATURES Location/Qualifiers
misc_feature 1..222
/vntifkey="21"
/label=Mito\signal
BASE COUNT 271 a 488 c 477 g 270 t
ORIGIN
1 atgcatcact atcagcttgt atcgtcgcgg caacgactgc cgtacaaggg ggtggggccc
61 atctcccaca cacacacaca cacacacctg cacacacgca cacacacgca cacacagagg
121 caactcctcc cccctacgct ttttccgagc tcagcgctca tgcgacggat tggtgtggca
181 acatgtcagc gacggtggct tgcctcagca atgctgcccc gcgccgggaa gtgcggaacg
241 ccatggtcag ggcacagctt cattctcgat accgcggcgt ctctcacaac cgccgtccgc
301 gaagtgcgct ccacggcggt ctgctgcgcc ccgaaggatg cgcagtatca gtgcggtgag
361 tgcggcaaaa cgttccgcct cgtcaacgcc ctcaatcacc acattatgac ccgccacggc
421 aacaacgcca aggcgctcat gaagaaggac ggcaagctag tccctgtgga aacggaccag
481 ctcaagggtg gggcgcattg tgtgtcctcc tcctcctcct ccacagcgac ggcgagctcg
541 gcaactccgg ccggggctgc cgccgcagcg tcttcctctc cactgtccgg cggcaccacc
601 tcaccgtttc cggtgcactt tgccgctcct tttggtgccg ccgccgcatc catgggcggg
661 gtggcgtcgt cttccactcc accaggcacc gcaccagggg tgctgcaggc ccctgcgacc
721 gccgcggccg gcgcaaccac ggcaggcact gacgagaatg ggagcggcgc cgacggggcc
781 gcggaggaga gggagaagcg catgttcgtc tgcacggtgt gccagaagac gtttcggctt
841 gaggcggcgc tacagcacca ctatcaggcg aagcacaaca tggacatgcc aacctccgcc
901 tcgtctccgt ctgctcgcgg cggcgcgagc acgacagcag gggctggcgg cgcctccgtg
961 tccactccgg gagagcctgg tgcgaatggt ggtggtagtg caggcgcgtt tggtggcgtg
1021 cctggcgtag ctgcagacgg tgccgcagct cctgcgaacg cttctagctt cggtgctgcg
1081 cagtacgtgc gacagcagga gggagcgctg cctgacgccc cgcagtacca cctcgatgtg
1141 gccccgaacg ccccggagga gggcgacatt gccgcgcact ggcgttgcgt gaacatgtgt
1201 gtgctgatgg gcgacgtgca ggaggtggag gaggggtacg tctttgagga tcatgtgctg
1261 cagttcactg tggcgaccga gtttgctacc ccggcccctg gcgaccctga catggacttc
1321 cacacggtgc gcgtgtacgg gcacgagttt tgggccccac tgaaggcaga catgcagagt
1381 ggcggtcgct ttctcgtcac aggacgactg tgtatggtgc cgcagtttga tacgcagctg
1441 aagaagtact atcactatcc agtgattcag gtctttcccg gcactggtaa cgtggtgcgt
1501 gtttga
//
LOCUS LmLC-7c 1521 bp DNA 26-MAY-2005
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|373754995|
COMMENT VNTDBDATE|375542145|
COMMENT LSOWNER|
COMMENT VNTNAME|LmLC-7c|
COMMENT VNTAUTHORNAME|larry simpson|
BASE COUNT 282 a 487 c 473 g 279 t
ORIGIN
1 atgatgtgcc gcgctgcgct acggcagcca ccgcggcact tcctacatgg gcagacgcgg
61 cgggcggcga ccgtgaccgc gctgtcaggt gtgtgccgct gtctgtctac ggcagcgccg
121 aggtctgagc ccatctcgac tcctgtatca ccgagctcgt ccccgtcgcc caagcaggac
181 ccgcctgcca cccctcggca gtccgtgcaa actgcaagcc tcacactaac agcggaatcg
241 gtgtgggaaa cggtcccaca ctggtgcgag ctgtgctgtg agcccgttaa cagctggcac
301 aaccacctgg gcaagcgcga ccatatttgt ctcgagatga tcctaaactc cgtagtcggc
361 agcaaaggac tctgggaatc cgacaaagtg tgggacagca ttgagctgtt tcgaagtcac
421 tacacgaagc gcccacacgg gcagccacga acgccctcgc cgattgtgaa acgcctcttg
481 aaggaggggc tctacgtgcc gggtcccgat cacccgcttg gcatgttcta cgacgccttt
541 gaccgtggtg acccgtacgc gcggcgggag gagctgcatc tgctgctctt gtacttgaag
601 gagtgtggga tgctgtgcct cgcccccgac gtgttccctc cagcgatctt ccaaggacac
661 ttgctcttgc acagcgaggt ggtgccggtg ctgacgcgca tcttcccaga cggggaggtg
721 cgcggaatct cggcactgtc gcagatgata acaggcgcct atgggctggc agcggcgtat
781 gaaacgtgtg ggatggagcg gctggtgccg gtctccttgc tgcaacaccg agggttgaac
841 ccagagctca tttcagtttt atcgtcggta gaggagttcg acggcgttgc ggcaagcgat
901 gacgcgacgg gcggcaccgg cggcgaagag actctcggcg aaggcgccga aggtgggact
961 agcgatgcac ccttatcaac cgaacaatcc atggcaatgc gctccttgag cgccgccatg
1021 ccccgtgcca tcctcggctc cctccgctgg gccctcgctc cagaggacac gagccccccg
1081 ccgatcatct ttcaggacca caagcgcaac gcctacctga ccaccttggc agcgcgcgcg
1141 gcacgcctgc tgatgtccga gctgatcttt gggcgcatct ccgagtacgt atatcgttta
1201 gagtacgttc tgcgcacaga cttcgggcgc gagtatctgc accatcgata cgaaggccat
1261 cgaacggcgg acaaggccag cggccgcgcg gcctcgcagc gctggctgcg caagcagtgc
1321 attacccctt cattgtcgaa cgagggaact gttgcctata caggtggtgg gctcgccgcc
1381 catgggctca acggcaccgt ggcggctgag tgcgccgttc ggatgcacga cgaggctcgg
1441 aaggcgcgca tgcacaatcg ccgcggactg ccgaaggcgc cacccagctc ccctttggcc
1501 cgcagtgtac gctttcggtg a
//
LOCUS LmLC-11 690 bp DNA 18-JUN-2003
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|277909929|
COMMENT VNTDBDATE|305746310|
COMMENT LSOWNER|
COMMENT VNTNAME|LmLC-11|
COMMENT VNTAUTHORNAME|Larry|
FEATURES Location/Qualifiers
sig_peptide 1..84
/vntifkey="94"
/label=Mito\signal
BASE COUNT 140 a 222 c 210 g 118 t
ORIGIN
1 atgtttcggc gcctttcccc tgctgcagcg acacggtcga tggcgaccat gacgcatccg
61 ctgacctccg cgacgcagtc ccagtcggtg acaagcacgc gcgcggcagt ctcacgtgtc
121 gcgatgcgcg ggtgcagcag cagcagcggc acctcatcag gcgacgtctc ttctacaaag
181 ggtgccgcct ttagcgtgag tcgatccggt cagcgcgcgc cgtcgatcaa ctgcgtgaca
241 ctcgttgggg tggtgcatga catccaaact ggctacgtct ttgaagacgc tgtcacccaa
301 ttcacgctca ccacgacaag cctggacgcg gcgaaccaag cccaagagtg cgtggtggag
361 aaggaccatc acaccgtgcg ctgctatggc gatgtctttt cccgggaagt ccgcgccaag
421 ctgagcgagg gcaatgtggt ctgcgtgaat ggccgtctgc gcttgaatcc gcaaatggag
481 ccgtcgtgca acaagtacta ctacttccct tacatccaag ttcagccgcc gcacggccag
541 gtgagcgtcg tgtacggcga ccgtcgctcc cctccgtcgc cggtgaacgc ggcgacgggt
601 gagctgaaca atggcaacgg cgaccccaca aacagcgcag caccggccga ggatggcgat
661 cctagcgcga cgacgcagaa gacgccgtaa
//
LOCUS LmLC-\6a 1764 bp DNA 13-MAR-2005
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|269458636|
COMMENT VNTDBDATE|368903338|
COMMENT LSOWNER|
COMMENT VNTNAME|LmLC- 6a|
COMMENT VNTAUTHORNAME|Larry|
FEATURES Location/Qualifiers
CDS 1..1761
/vntifkey="4"
/label=ORF
sig_peptide 1..147
/vntifkey="94"
/label=Mito\signal
BASE COUNT 364 a 516 c 529 g 355 t
ORIGIN
1 atgaaccgct gtggtgtaaa gaggcgcctt tcactgcggc tgccagtggt gtcaatcgca
61 ggccttcggc ggcgagcgcg aagagcagca ggcacgcgta gcggcagtgt tgcactttgt
121 gtctctgctg cgtctattgg cagtagcacc agcctcgcta gcacccctgg ccggaaagct
181 cccgtgtact acaactttgc cacgccggtg agtgtgctac gtgacgcggc gggtagtgaa
241 agtgtgtctc accgacgccc gcgccgcgag gcgccggctc gagagggagg gctgctactt
301 gtggcgccgc gcacgccgaa cccgaacgac ccgcttcaac ggctgaacat ttttcgacgc
361 gagttttccg atttcagcag cgccgccaag ctcaatccga atatcatggt gagcgtcgac
421 accagcacgc gccgcttcct cgaaatgttc tgtgacttcg atgccaaacg ctgcaagctg
481 tgcaatgaga cgttcttgca gtggcacatc cacgccaacg gcattccgca cgcggggcga
541 gaggggatgc tgctggagct tgttcgcccg tattgtggaa ctccggatga actcatagag
601 atgtggtggc agcggctgaa ctcgtgtgct gcgtttcacc ggattcccgg cttgagccac
661 gacaacccac acgagcgcaa gcggcgtctg ctatatctgt tgaaagtgct gaaagaccgc
721 ggcatccttg tagagacgtt caacgtgagt gacaaccagt ccaccaactc agcgcgctcg
781 tgggagtttg agcgcctcga gttcgtgggc gacaacgtgg tcaagtacgt gttgaacaac
841 attatttcct gtgcattccc acctcacgag ggcggcacaa aaggaaagat gacgtgcttt
901 cagttcgtga tggacggcaa cgatggtttg gcacgcggct acgaccacct cgacctccag
961 cagctcgcct ccagccctag ggtagtcagc aaatttaaga gcgacattgt cgagaccctg
1021 ttcgcggagc tgcagatgta cctgtggagc acgcagcacg atattggcac ctgtcctctt
1081 gtgtttccat ttacgaagga tatttacacc ctgcgggcgc tggtacagca tgtgctgtac
1141 gagctgggta ttgaactctt tctctaccac attcgccaca ttaacggcat gctacaacgc
1201 gtgatgcgag agaatcacct gcagttcgta aaagcagatt ccgcgctgaa gcccagggcg
1261 ggcgccagga ccgggagctt gggcgtgagc acgcgccgtg gtgactggag cgatgacgac
1321 gatgactacg actgtccgca aagctacggt acgccggcgg tgtccgcccc cacggcagcc
1381 ctcatgaagg tgcgctcgca gcgcacccac gtgcaaggca ccggtgcggc gctgttcttt
1441 gcctccacaa actacgataa cttcaagcgc gtggtaccga tcggcggtct tttgccgcgg
1501 ccatttgcga ggcaggattt gtcagtcatc ccaaaccaca tgccgcacct ccggagcgat
1561 ggcgcgatga cgcggaggat gaggagggtc gggaatgccg gttggtcgac cctgcacgcc
1621 acagcaacag ctctgaccac gttggaaagc gttgccgacg gtctcgccct cagtgccgaa
1681 acaacgcctc gtgtgggcag cgagccagta cgcttgtcag ttccgcgtct caaggacgag
1741 gagctcattc cagagctgat ttaa
//
LOCUS LmMP19 690 bp DNA 10-MAY-2006
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|410109502|
COMMENT VNTDBDATE|410109502|
COMMENT LSOWNER|
COMMENT VNTNAME|LmMP19|
COMMENT VNTAUTHORNAME|Larry|
BASE COUNT 140 a 222 c 210 g 118 t
ORIGIN
1 atgtttcggc gcctttcccc tgctgcagcg acacggtcga tggcgaccat gacgcatccg
61 ctgacctccg cgacgcagtc ccagtcggtg acaagcacgc gcgcggcagt ctcacgtgtc
121 gcgatgcgcg ggtgcagcag cagcagcggc acctcatcag gcgacgtctc ttctacaaag
181 ggtgccgcct ttagcgtgag tcgatccggt cagcgcgcgc cgtcgatcaa ctgcgtgaca
241 ctcgttgggg tggtgcatga catccaaact ggctacgtct ttgaagacgc tgtcacccaa
301 ttcacgctca ccacgacaag cctggacgcg gcgaaccaag cccaagagtg cgtggtggag
361 aaggaccatc acaccgtgcg ctgctatggc gatgtctttt cccgggaagt ccgcgccaag
421 ctgagcgagg gcaatgtggt ctgcgtgaat ggccgtctgc gcttgaatcc gcaaatggag
481 ccgtcgtgca acaagtacta ctacttccct tacatccaag ttcagccgcc gcacggccag
541 gtgagcgtcg tgtacggcga ccgtcgctcc cctccgtcgc cggtgaacgc ggcgacgggt
601 gagctgaaca atggcaacgg cgaccccaca aacagcgcag caccggccga ggatggcgat
661 cctagcgcga cgacgcagaa gacgccgtaa
//
LOCUS LmMP41 1164 bp DNA 10-MAY-2006
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|410110967|
COMMENT VNTDBDATE|410110968|
COMMENT LSOWNER|
COMMENT VNTNAME|LmMP41|
COMMENT VNTAUTHORNAME|Larry|
BASE COUNT 229 a 364 c 356 g 215 t
ORIGIN
1 atgcacgcca cgcttctgcg cagtgggata cgcacggtgg tgccgccccc aaaggcctcg
61 ccgctgtacc gatttcttcg cgaaagtacg gcgcagagcg tactcgatgc ggacaactct
121 acgaagatgg cgagtgagcc cctggccagc gtgctgccga aagggtcctc gacggagagc
181 cacgccttgc tctcatcgct gccggtgggt gtgtttgagg gcctgaatcg acatgtctgg
241 gtggatagta agcgcagctt ctgctacctc tgccaggaga cagtgggtaa cgttacaatc
301 cacagcagcg accgcgatca caccagcatg ctgtttttcc ttctgctcta cacggcatac
361 ccgagacacg acttgttgac cgaggcggcg cgagccccga cggcaggaga gagggcagcc
421 gttgtggtga aagatgggag ctgcgcctca caagcgtctc tgtcggccga gcacagcaga
481 gccgcgggtt tgcctcggcc gatgtccgcc tcgagaagca aggccgtccc gctgttcacc
541 cctaagcatg tcctcagcgg ggcgaaacgg gactttccat ctctcttccg ctacgccacg
601 gactgccgca ccacggaccg cctacacgtc gtcgacgatg ccgtgcgccg tgccgagcta
661 gaggcgctct tgctgtacct ggcgcaccca ccgcaccagg cgctctcgca cgttctgcaa
721 ggccaaagcc cgaatggata ctggtacaac ggggagcgca tgtggaaggc gcacatcagc
781 cgcatcgtcg cacaactgta cccacccatg tcggctggca tgatgaccaa cttcacccag
841 aagtgctggg gccgcactaa cggggagcgg ctgtacgacg cactctgcct gcaccgcatc
901 aaggcctacc acggctgggg ccccttcgag agcaaggagc gcaaggcctt ctttctaagg
961 catctaatct gggagctgct ctgtgtcgag gtccgcgacg aggtatcaga ggaggcaaaa
1021 ctgttgacgt cgctggctct tcggcggctt gcgttcgaga tggtgttcct gcagtcaatg
1081 gactacatgg atcgagtgca gcgtgtgcac gagctgctgg gcagcccctc gctggaggag
1141 ctcaaaaacc ttaacgcgct ctga
//
LOCUS LmMP47 1602 bp DNA 10-MAY-2006
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|410111028|
COMMENT VNTDBDATE|410111028|
COMMENT LSOWNER|
COMMENT VNTNAME|LmMP47|
COMMENT VNTAUTHORNAME|Larry|
BASE COUNT 303 a 496 c 519 g 284 t
ORIGIN
1 atgccctcgt cgtcgtcact gctgaggttg tcgcccattc gccgcgccgc tgtcgccgtg
61 atgacgcggg cgttgcgggc cacttccact aacatgtcct ccaggacacg cgtcacgatg
121 gccaacgccg cgggtgacaa cggcgcgaac atcctgcggc ctccataccc gactgagggc
181 ggcagtgttc ccgtatactc gatgatgcac gggcagattg acaagcgcaa ctgggtgttt
241 cgcaacccgc agtggtgcga gctgtgcaac gagccggttt cccgttggtt agatcatcag
301 ggtcgcaagg accacgcatt gttggatttg cactactcgc agctggccga gtggccgcgt
361 cgatggaacc ccgaggcggt gctgtcgacg ttcatgcaac acctcggaat cgacagcgtg
421 gagccgtacc acgctctctt ctccaagctg gacagcgagg gccgcacaga gctgtacgcg
481 atgctcgtca aactggaaga ggctggtatg gtgcacttcg gcagcagccg cgacacctat
541 ctcagccgca tggtcggtgg gatgcgcggg ttcgaccatc aaggcgcgct ggtgttgcac
601 gagtgcctga tgggcccctt tctgcgactc tttccaaacg gcctcataca agattactcg
661 aacctcctcg acttcatttc gtgcggctac aatatggaga cggtgtacga catgtgcggt
721 atgtacacgc tggacaaggt ggcactgcgg gagcgttacg gaccgagctc gcccgccgcg
781 atggggctgg gcggcgtcgc gacgtgctcc tccgcgtcgc gcggctacga aaacgacttg
841 cttgcgtcct tgtcggcggc ctcgtcgtcg tcgttgtcgt ccgccgcctc cgacagcgcg
901 gccaacgctg cgagcgcccc aggtggcggc agcggtacca agggccggct cgcgcagctg
961 caagccgcac gggccgcgaa gttgcaggag aagtcagagg aggaagcctt ctcgcgcaag
1021 acggcattcg tgcgtcagat cctcgggcag ctgcggtggc tgctgatgcc agagcaggag
1081 cacccggccg gtttcacgtt cccaccgcac atcatcaccc tgggcgagct gtgcctgaag
1141 gggctggtgg tcgccattat cgaggcacgc ctctgcgagt acatggtacg cgccgagcct
1201 gtctgggttt ccttcggcct cgagcggcgg aagctcaagc agagcgcgat cgcgaatgcc
1261 ggagacgtgg tgccgcagcc ggtgcagtac tcgtaccgcc ccatggcccg cgacctgcgc
1321 gacctgtact ccacccaacc aagcgcgctg gatgcaatgg tgcaggcggg cctactgaag
1381 aagaagctac cgacgctgaa ggcgtttggg aagcacgagg cgtcatcgat gcatgcgaaa
1441 ctagtaaaag gaggggcggc agcggtggac agctcacgtg aaagcccctc atcagcatct
1501 gcacccccct gctgcgagca ggccactgca acagatcatt attggcaagc caccccagcg
1561 aaaggaagcg caagatcaag agagggtgcg tcgaggcggt ga
//
LOCUS LmMP67 1749 bp DNA 14-DEC-2004
DEFINITION RNase III motif.
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|357919284|
COMMENT VNTDBDATE|357919284|
COMMENT LSOWNER|
COMMENT VNTNAME|LmMP67|
COMMENT VNTAUTHORNAME|Larry|
BASE COUNT 324 a 540 c 516 g 369 t
ORIGIN
1 atggtgcagg agtggtgggt gagcgctgct caagaggcgg tcatctcccg gaaagccacc
61 agtcgggcag agcgcattgt gacggaggcc gacgatccgc gctccggtac gagtcacttc
121 tacgatagtg atgccagact ctgcctcgtg tgcaacgcgc gtctggaggg cagctacagc
181 gcgcacagcc acagcgtcga ccacaaaccg cgcgttgcac ttttgaagcg cacaatcggt
241 atgattctca catttctcga gcaggccggc tcatcaccgt cgctgccgcc gcctccggag
301 tcggactcgc cgtactcgtt gcctggcagc aaacgcttct tagtgtcagt gtcaactcac
361 acaggaacac ctgccgcccc agccccttct tgcttccacg ccttgtatgc cgagtcacct
421 ctgtttgctg aagacggcgt gccaagtcgc gcgctcctct atcaccgccc gtgcacgctg
481 cgcgagtttg acctggtaga cgtgatcatg cggcgctggt ggaacacttt gcataatcca
541 ccacctaggc ggggtagtat ttcctttgac cgcctcctct cgctttcctc ggctgagctg
601 cagatgcggc gatggcgtgt gcgttaccta ctccactttc tcaagtcgag aggggttctc
661 cgctcttgcc taacactgag gtccgaccaa gtgaatgcgg cgccgtcccc caacgagcgt
721 attcaccgtg gtgaggcctt tgagcggctc gaaatggtcg gcgacttttt cttcaagagc
781 ctcacccccg accgaatgca caccgtcttc ccggctgatg agggtggact tacagctgaa
841 ctccagtgct ttgagcgggc cttggattcg aatcacggtc tgctggccat ctatgactat
901 ctcggtctgg atgacatagt cggctgcttt ttggccaaca acaaggcaaa ggccgacgtt
961 gtagaggccg tcattggtga gctgaaggtt ctgttgtggt cgactgaggt ggtgtggggc
1021 atggagtact acgccgtacc tggggagcgc gccacgcatg tctacctgcg agcgttggtg
1081 gcgcacacca tcgccgagct ggggcacacg gtgctgatgt ggcagctgga gagtacacta
1141 cgcaattgtc gcgacttcct tctcaagcac accgtggagg aatacttggg cgccgagaaa
1201 gggaacgagc gtcgtgcaag caggggaggt gacgggtgcg acgtccccgc ggaccttcca
1261 aagtactcac cgctgccgcc gttgctcgcg tggaatcggc gccgcctggg cgtgtcgatg
1321 cggaggggtg aggtgccgct cgcaagcaaa cagtctcgaa gcagcatacc gccgtctcct
1381 caagacccgc ttcgcagact cgccccgact gcgagctgca ttccggaggc tattcgggat
1441 cactacgccg tcggtcgcaa aaagtggagc tcatatgcct gtaaaacagc cattcaagcc
1501 ctctgcgcct ccctcacaca aactgcgctg cagcatgaca gcggtcacac cgctgacgct
1561 ctatcgttga actcatcgtc ggcatccttg cccctctctc cagaaccgca gccgtcccca
1621 actacgccgg cgtatgcgtg cgtccctcgc agtgtgttac gggctctggt gactgcgaat
1681 tgcgtggtga ttcgtaattc ggccccgccc ctcgctagaa gcacgtcgac taggagggtg
1741 gctgggtag
//
LOCUS LmMP90 3030 bp DNA circular 29-NOV-2005
DEFINITION RNAse III motif.
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|357919196|
COMMENT VNTDBDATE|392396611|
COMMENT LSOWNER|
COMMENT VNTNAME|LmMP90|
COMMENT VNTAUTHORNAME|Larry|
FEATURES Location/Qualifiers
misc_feature 1..20
/vntifkey="21"
/label=6716
primer_bind 3005..3027
/vntifkey="28"
/label=6717
primer 217..231
/vntifkey="27"
/label=6766
primer_bind 753..772
/vntifkey="28"
/label=6767
BASE COUNT 569 a 984 c 931 g 546 t
ORIGIN
1 atgcattcct ccgcaacgca cagactcgca gcgacaaggg caccaaccac cacgctcctc
61 tgcaccgcac atgctgtaaa ccgcctcccc acaacgtgca cgattcccag ccgcgactgg
121 ggttcaggcg gcggtacgct cttccaccca acgcgagcac tgagggctct caaaccagtc
181 accgtggccc actccgacac gttcggctcc tttcggcagg ccaacagagc agcggcgggg
241 acgtggtggc gcagctccac cgaaacggcc tcccgtgtga agggcggaag gcttggcagg
301 gtgaaggatc cgtttcaggg cgtctttttg caactgcaag gctgcacaga ggtggagatg
361 acgcggcgaa gccccactcc accaccggac ttcccgctgg acagtctacc catctacgaa
421 ccccatgacc ataacgggcc accgcgcacc aaaatcggct tccaccttcc catgcgctcg
481 ctgccggcgt ctctagccct cgactttttt ttccctggtg caggctctaa cgatagcctg
541 caagcagcca acgcctccag cagcagcagt aggacccata gcagtggggg gtctgcaaac
601 agtgaccttg gcgcgcgcta cgaagaagcc gacaacggtg ccggcagtgg gcatcagcag
661 cacacctcga ggctcgaccg cgcggcgcac ggtacgaaag gactctccgc tgcgggcgct
721 gggagtgtca ctggcgacac atccacggcg ttctgccgtc tgtgtcgcga aagcttcgat
781 aatgatggaa cactacggtc acacattacg gtcgcagacc gggcgcggca cgtctctcac
841 ccggtgcgcg aggtggcgct tgaaacgctg acactgctgg ccgtgcgcgg ataccccatc
901 gacaatataa tgacggtgtg ggccgacatc ctgttcaact gtccactgtt tccgcgcatt
961 cgcagcatga cagacccgcg gtggtcgatc gagaagcggg ctgctcaaat tggcattatc
1021 ctgcgggctt taaagcgggt tggggtgctt gatgtcgccc ttgcgacggc agagccgacg
1081 gacgtggcgg gctcgctcaa ctcgcgctac cggcaacgcc gcgtcgcctt tgaacgactg
1141 gagtacattg gcgacaactg ctggggcaac aatatttcga atcggatcct gttgctgtac
1201 cctgatcagc agtggctgta tagcgagcgc tgcagcacgt tcacgctggt gcgtgatgca
1261 tgtgagatga acgtcaatct cgactttgtc ttcgacacac tggagctgtg gcacctcttg
1321 tcgaccacgg cacactcgcg actagggagt ggaaaggtga aggccgacct tgtggaaggg
1381 atctttgggg agctgcacct gcacctctac ggtatggtgc ctaagctgca ggatgatgtg
1441 gagtacgtgg agacgaacgg cgctagagag gtgcagctgg tcgcactcgt ggagcactgc
1501 ctgacagagc tatacgacct catcgtgctg aagcacgcac gcgacctcgt cacatcagcc
1561 atacctctcg cgaaggagct ggcggcgaag cgaatatggg cgcgaacgcg cccttttgtg
1621 ctgccgcaga agcgtcccaa cactggccgg gctcgaggca agactgcgat gagcaacggg
1681 gcgccgcatg catcagcctt tccatcggct gttccgacgg tcggacgcgt tgccaccggc
1741 gggtatacag cgtcctttcc ggcaccacac acgggagtgg cgaccgcaaa tgcgtctgtg
1801 gctacgctgg aggacctctt cgatgtgtca ccttcgtcct tgcagcagca gcagcagcac
1861 gatttgtccg catgcggggc ggcgagtggt accatcgagt cgcgcgctga cgggcgcacg
1921 gaggtagccg tggtaagcaa cagcggtaaa ggtagcaggc ataacacgaa agagcgggcc
1981 gaagaagcgg ctgcagtggc gagggggcga gccggcgtga tgccaatctc tcctttattc
2041 cccaccccct tatccctcac gctgtcggcc tccattggtc tgggtagcac gcgtgtcctg
2101 ccggcgttgc cgcgtctctt taccgctcca cacgtgtacc ccgaacgcgt gcccaacccg
2161 ctgcgcctcc tgccgctctc ggccatccca agcatgacct actgtcacca cacgtgctcg
2221 gacgtttttg cgaggatgaa gatgagttac gagcgccttg gtctgcttca tgaaggttcg
2281 agccacatgc actatgtggt aagccctact ccgccgaggt gggcggtgct gatcgccaca
2341 cttgtgccgc agctcgtggg atgcgcgccg ctgcctgtca agccgaccgg tgacacaaaa
2401 ggggcgtcgg ccgaagcgcg tcggctttta gcgtccatgg atcagggcgg cctgtactgc
2461 cgggacgccc tctacaatct cgcagtgttg ccgtcctcgc ctgctgccgc ctcgcgaccc
2521 cacgcaacgc cgccgccgat gagcactgcg tgggcgctgc agaatgccgg cttgcccgcc
2581 ctctctgcca cgccgagcaa gacaagagag gacgacgacg acgcttcctc ggacaaaagc
2641 gggcgcagcg ggtgcacctt cgctccctcc cgctacgtcc cgcccggtat tcgagcgccg
2701 ccggctggcg tggtgacaga ccgtaacctc tgccgcggcg tctttgcctt cctggctgtc
2761 ggtgtggctg acgccgtggc agaggctgag cgactcacac gcacggacac ggcgtcggtc
2821 agtcccgcta ccccggcggg ccccaccaca ggtgcgcggt cctctggtga gtgcccggcg
2881 cagcactcgg cagaagacaa ctcgcctaaa gcgtcggcca ctgcgtacgc gcagcggatg
2941 aaggcggcaa tggactactg gcggcgccgc tcgcagacgt ccctccagag cttatcggcc
3001 gcatccggtg aggcgtcact gcctcgctag
//
LOCUS LmREL1 1473 bp DNA 12-AUG-2002
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|223648966|
COMMENT VNTDBDATE|274806856|
COMMENT LSOWNER|
COMMENT VNTNAME|LmREL1|
COMMENT VNTAUTHORNAME|Isolde|
BASE COUNT 280 a 470 c 487 g 236 t
ORIGIN
1 atgcgtcgac tggcactgcg tcgcgcgcca cgctgcagtc atgccaccct gtgcagcagt
61 cgcggaggcg gcagcgttct gaggcgccag gcatcggcga ccgccatctc tccaccatcc
121 ctctccacca ccaccaccac caccacctcg tcgcagagtc tcgccacggc tgcgctcaca
181 acgccgcacc gctgctacat gccacttccc cgaaaccaag aggacttctc ggcctacacg
241 gagatcgatc tgccgacgga gacgcgcatc gacgcgatcc ggcgcacggg cattgcgagc
301 caggagtggg tggcgtgcga gaaggtgcac ggcacaaact tttccatcta cctcatcaac
361 gaaagcgagg tgcggttcgc gaagcgcagc ggcatcatgg acccgagcga gaacttcttc
421 ggctaccacc tcctcatcga cgacttcacg gcgcaggtcc gcgcgctgtg tgcgctgctg
481 aagcgcaagt acggcgtgac gggccgcatg ggccgcgtcg tgctgcacgg ggagctgttc
541 ggtgccaagt acaagcatcc gctggtgccc aagagtacca agtggtgcac gctgccgaat
601 aagaagcgga ttccgatctc gggggtggag atacagagcg agccgttccc gcagtacagc
661 ccggagctgc actacttcgc attcgacgtc aagtactccg tctcgggtgc cgaggaagat
721 gtggtgctgc tgcccttcga cgacttcacg gaggtgtgct cgcaggtgcc gaatctcctg
781 tacgcgaagc cgctggtgcg cggcacgctg gacgagtgcc tcgccttcga cgtggagaac
841 ttcatcacac cgctgcccgc gctgctcggg ctgggcaact acccgctcga aggcaacctc
901 gccgagggtg tcgtcatccg tcacgtgcgc cgcggcgacc cggcggtgga gagcagcggg
961 gtctcgacaa tcatcaagct gcgctgctct tccttcatgg agctcaagca ccccggcaag
1021 cagcaggagc tgaaggcgac gttcctcgac accgtgcgtg ccggcgcgct gcagcgcgtg
1081 cgcagaggca agaaggtgac ggtgctggcg gactcgatgc tgccgaagct ggaggcggcc
1141 gcgaacgcgc tgctgctgaa caacgtcagc gagggtcgtc tgagcaacgt gctgtcgaag
1201 atcggccgcg agccgctgct gaccggcgac gtgaagcagg aagatgtcgt gctgatgctc
1261 gcgcaggacg ccctgaagga cttcctgaag gagacggacc cagtggtgct gaacacgtcg
1321 ctgtcgtttc gcaagacgct gatccgcagc gtgtacttcg cggcggaaga gctgctgcag
1381 ggcgaatgga agcgcgtcat ggaccggttg aaggcgtcgc aggcggagat cgacgccgca
1441 gctgccgcgc aggagaaggc agaggcgcag tga
//
LOCUS LmREL2 1257 bp DNA INV 23-JUN-2004
DEFINITION Leishmania major REL2 gene, complete cds.
ACCESSION AY437475
VERSION AY437475.1 GI:38073402
SOURCE Leishmania major.
ORGANISM Leishmania major
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Leishmania.
REFERENCE 1 (bases 1 to 1257)
AUTHORS Worthey,E., Schnaufer,A., Mian,I.S., Stuart,K. and Salavati,R.
TITLE Comparative analysis of editosome proteins in trypanosomatids
JOURNAL Nucleic Acids Res. (2003) In press
REFERENCE 2 (bases 1 to 1257)
AUTHORS Worthey,E., Schnaufer,A., Mian,I.S., Stuart,K. and Salavati,R.
TITLE Direct Submission
JOURNAL Submitted (13-OCT-2003) Seattle Biomedical Research Institute, 4
Nickerson Street, Seattle, WA 98109, USA
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT ORIGDB|GenBank
COMMENT VNTDBDATE|342092347|
COMMENT LSOWNER|
COMMENT VNTNAME|LmREL2|
FEATURES Location/Qualifiers
source 1..1257
/organism="Leishmania major"
/mol_type="genomic DNA"
/strain="Friedlin"
/db_xref="taxon:5664"
/vntifkey="98"
mRNA <1..>1257
/product="REL2"
/vntifkey="54"
/label=mRNA_1
CDS 1..1257
/codon_start=1
/product="REL2"
/protein_id="AAR10823.1"
/db_xref="GI:38073403"
/vntifkey="4"
/label=CDS_1
/note="similar to Trypanosoma brucei RNA ligase 2; LmREL2; LmMP48"
BASE COUNT 285 a 358 c 378 g 236 t
ORIGIN
1 atgcttcggc gatgcctgct tacacggctc gtgcgtcgct cgctggtcct cttttcggac
61 gaaaaagaag cgctgttcga gcgctatagc gagattgaaa acgcccactc acgacgcatt
121 gaagcactga aggacgcggg tctcttcaat gatgagtgga ttgccacgga gaaggtgcat
181 ggcgccaact tcggcatcta ctcaacagag catgggaaga ctattcagta cgcgaagcgg
241 agcggcatta tgccgccgta cgagcacttt tttggctacc acatcctcat acctgatctc
301 gcgaggtatg ccaagcaagg gcgagaactg cttacagaac agctcggcat gtcacccagc
361 accgtaatca tcaacggtga gctgtttggt ggcaagtatg accatccaag cgtgccgaag
421 cggcggcaga acgtgatggt ggccggtagg ccacgcacca tcacggctgt gcagaacaat
481 gcctttcctc agtactgccc agacctgcat ttctatgcct ttgacatcaa gtaccggaag
541 accgaggagg aggagtactg caccatgacg tacgaccaag ccttggccat cttcgagaaa
601 atttcgggcc tgctctacgc gaaggctatc attcgagggc cgctgagcaa ggtggccgcg
661 ttcgacgtgg aaaacttcgt cacgacaatc ccgccgctgg tgggcatggg cgactacccg
721 ctcaagggga actgggcgga gggcctcgtt gtaagacact gccgtcgcgg cgagcctgac
781 ttcgacgcaa agggcctcac catcatgaag ttcaagtgca ccgccttcca ggagatctcg
841 accgaccgcc gccagggacc gcgcgtagac gcgctggagg aggttcggcg gcagtccatc
901 aaagtctccg gtgtacagct gccggacatg gagagcgtca tcggcgaccc cgaggtgctc
961 caagcggcgc atcgcctgct cgaccacgtg tgtgagaatc gccttcagag tgtcttgtcc
1021 aagatcggta caggcccgtt cgagacgcag tccatgaccc ccacagagct ctccacgctg
1081 ctcgcaaagg atgcgctgaa agacttcttg aaggaggcgg atgcaaaaat cgtcaacacg
1141 ccgctactcg tgcgccgcga gatggtccgc tacgttgttt ttgaggcgcg caagtacgtg
1201 gccagcagat ggaaggacgt cgttgggcag caaaaggagg cagacggggc gtcgtga
//
LOCUS LmRET1 1533 bp DNA 20-JUN-2003
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|305919828|
COMMENT VNTDBDATE|305919828|
COMMENT LSOWNER|
COMMENT VNTNAME|LmRET1|
COMMENT VNTAUTHORNAME|Larry|
BASE COUNT 301 a 482 c 463 g 287 t
ORIGIN
1 atgcacgctc ctacgccact gtacctctac gtggccgtca cgcgcgggtt gtgttccagc
61 gcggtggcgg cgtcgagctc ggctgacgct gcatcttcgc cgagcgcggc gtcctcgtcg
121 acgtccgagg gggtcagcta tgcctcgcac ctcgttgctt cgaacgatca ctacgtacag
181 tggggtcgtg cactgctgga ggagaacagc aagcggatcg gtccagagca gatgtttcgt
241 acggccattc gggcccaaca gcagctgcag atgcttgccg acaagtggac accggatgcg
301 aaaatttact gctgcgggtc gttggtaacg cacgggcaga tggagtgggg cagcgacctc
361 gaccttgcct gtgtcttcga cgacccgtac cccgaccact ccgtgcaggc gaagcgcacg
421 gaaaagctgt ggtcagttgt caagcgctac atgccgcagt ttctgcgcaa caatctcttg
481 gccctcacgg aggctcgcac ccctgtcgtg aaactgcgct acgtcaacga cgacaaggtc
541 gcgcgggggc ggtacaccgt gctgacggag gaggaggacc gcaagtcgcg cacgaccctg
601 tgggacatac gcaaccgcca tctggattcc aaggacctgg agtacatcgc cacaaagatg
661 gggcgagaga atatcgaggg catctgggtg gagcggacga cgtatggctg ccggtgcgcg
721 gtgcagtgca cgtcgcgcga gcaagccgtc ggggctgtcg gcttcttccc agatggggtg
781 atcatgacca agggcatgcg cgaggactac acgcgcgaca tgctggacct ccgatacgtg
841 ccggagatgt ttatgtacaa gtgggatatt tcttttgtgg cttacggcgt caagaacagc
901 tacctgctcc gccactatct gcacaacggc cccccagctg cccgccacgc agccatggcc
961 gcgaaggcgt ggggcaaggc ctccggcgtg gggctgggga cggcagccat gctcacctcc
1021 tacgcggtga cggtcatgtt tgttcactac ctcttggcaa ctcggcagct ggcctggatc
1081 gacccgtggt cgttagccca tccagtccac atgccgcgct tccccgactt ctccccactt
1141 ttggactgcg acccggccga gctcggcaag ctcctgcacg gcttcttcat ctactacgcg
1201 tctcacttca actatgagaa gaacattatc agcctcagcc gcccacggct ttcactccgc
1261 tccgacgtga actggaactt cccgcagagc aagcagggca cattcagcta cctcctcggc
1321 atcgaggacc cgtacgaaga cgtcggggtt ggcggactga acctcggtcg ccacctgcat
1381 ccagctaagt tcaaccaggt gaagcaggaa ttcgcgcgtg cggccaccac gatggagcgc
1441 tacgtgccgt cgaatgcgcc cgaaaagaca atcctcggtg tcagacgcgg gggtacgtcg
1501 aaccaccatc atcaccataa ccgcttcgat tag
//
LOCUS LmRET2 1530 bp DNA 5-DEC-2005
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|393088002|
COMMENT VNTDBDATE|393090023|
COMMENT LSOWNER|
COMMENT VNTNAME|LmRET2|
COMMENT VNTAUTHORNAME|Larry|
FEATURES Location/Qualifiers
sig_peptide 1..69
/vntifkey="94"
/label=Mito\signal\seq
BASE COUNT 300 a 482 c 462 g 286 t
ORIGIN
1 atgcacgctc ctacgccact gtacctctac gtggccgtca cgcgcgggtt gtgttccagc
61 gcggtggcgg cgtcgagctc ggctgacgct gcatcttcgc cgagcgcggc gtcctcgtcg
121 acgtccgagg gggtcagcta tgcctcgcac ctcgttgctt cgaacgatca ctacgtacag
181 tggggtcgtg cactgctgga ggagaacagc aagcggatcg gtccagagca gatgtttcgt
241 acggccattc gggcccaaca gcagctgcag atgcttgccg acaagtggac accggatgcg
301 aaaatttact gctgcgggtc gttggtaacg cacgggcaga tggagtgggg cagcgacctc
361 gaccttgcct gtgtcttcga cgacccgtac cccgaccact ccgtgcaggc gaagcgcacg
421 gaaaagctgt ggtcagttgt caagcgctac atgccgcagt ttctgcgcaa caatctcttg
481 gccctcacgg aggctcgcac ccctgtcgtg aaactgcgct acgtcaacga cgacaaggtc
541 gcgcgggggc ggtacaccgt gctgacggag gaggaggacc gcaagtcgcg cacgaccctg
601 tgggacatac gcaaccgcca tctggattcc aaggacctgg agtacatcgc cacaaagatg
661 gggcgagaga atatcgaggg catctgggtg gagcggacga cgtatggctg ccggtgcgcg
721 gtgcagtgca cgtcgcgcga gcaagccgtc ggggctgtcg gcttcttccc agatggggtg
781 atcatgacca agggcatgcg cgaggactac acgcgcgaca tgctggacct ccgatacgtg
841 ccggagatgt ttatgtacaa gtgggatatt tcttttgtgg cttacggcgt caagaacagc
901 tacctgctcc gccactatct gcacaacggc cccccagctg cccgccacgc agccatggcc
961 gcgaaggcgt ggggcaaggc ctccggcgtg gggctgggga cggcagccat gctcacctcc
1021 tacgcggtga cggtcatgtt tgttcactac ctcttggcaa ctcggcagct ggcctggatc
1081 gacccgtggt cgttagccca tccagtccac atgccgcgct tccccgactt ctccccactt
1141 ttggactgcg acccggccga gctcggcaag ctcctgcacg gcttcttcat ctactacgcg
1201 tctcacttca actatgagaa gaacattatc agcctcagcc gcccacggct ttcactccgc
1261 tccgacgtga actggaactt cccgcagagc aagcagggca cattcagcta cctcctcggc
1321 atcgaggacc cgtacgaaga cgtcggggtt ggcggactga acctcggtcg ccacctgcat
1381 ccagctaagt tcaaccaggt gaagcaggaa ttcgcgcgtg cggccaccac gatggagcgc
1441 tacgtgccgt cgaatgcgcc cgaaaagaca atcctcggtg tcagacgcgg gggtacgtcg
1501 aaccaccatc atcaccataa ccgcttcgat
//
LOCUS LmREX1 2982 bp DNA 2-APR-2003
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|273515867|
COMMENT VNTDBDATE|298806334|
COMMENT LSOWNER|
COMMENT VNTNAME|LmREX1|
COMMENT VNTAUTHORNAME|verdi|
BASE COUNT 551 a 938 c 938 g 555 t
ORIGIN
1 atgcggggtg cgctggcgcg tagcgcatgt cggctcgcct ccctccagaa agggacgcag
61 ctagctgatg tctaccagct cctcatcacc aagaagccgg tcgagtacga ctacatcgcg
121 attgacgtga acgcctttgt cggcggcgcc atgcgcataa caaagaacat gtcgccagag
181 cagcgtcgca gcaaggaggc ttcgcggcat gtcctcaact ccatcatgca gattctgcgg
241 cgcgtggtgt gccgtcactc tcttcttctc gcctttgacg gtccggatac gtttgcgaag
301 gcgtacaagc ttcgcaccac atcgtcgaca cggcgactcg acattcgaac tcagcgcctc
361 cccggtggtg ctttgatgcg cgcggtggag gatcgcatag tcaaggcgat gccgctgggg
421 cgcgggctga ttcctggcga ggtggtcgtt tccggtgtca acgtggaggg cccggtggag
481 cgaaaggtga cggcatgggc tctcgacttg gcgtgccgcg acggggcgca gcacaccttc
541 aagtctatct gcctcatcgg agcaggggag ctgtggatga acgtgctcgc cctcacgccg
601 tactttcaag gcacgagcat cttgcacgga tcgtccgact tgcgccacat gacgctcaac
661 gactccctga catggctcca gctcggcgac gacctgctga ccggtgatgc acgggtcatc
721 actgcagcgc ggacagatgc gctgctgctt tatctgctgt gccacggctg ctccgcaaca
781 gacctctcgc cgctgtctgg atcaaacttt acggttctca tggaagcata ccacgctcga
841 cgccgcgaag ccgcagcgac cgccggtgcg gccgccgggg caccgacctt tcagctcatc
901 cgcgggcagc cgaacggtgc cctgatgctt gacgtgcagg cgctctacct actctttgtg
961 gcggaaaagg acactgcagc agcaatcgag tcgctggcgg cgcttgtcgt gccggcgaag
1021 gatgagagcc tacacgcggc accgctgagg accttctcca tgccgctctc cacttcaggc
1081 ggcagtgcat cagatgagaa gatgcgcgac gctaatatgc ccgacatgtt gcacggcagc
1141 tacctgagcc acctgcttaa ctcccatcac ctcttctgcc atggtgaaat gctcggtcgg
1201 tcccgtgtgc cggcctacat ggaggcagag gtgaagatgg ggagccttga ccgcagcggc
1261 gccgcgggtg tccgcgccag cgtggtcacc gtgggggatt ggacccgctt tctgctccgc
1321 tgtctccaac gcggggggcg ctacgctttc gccagtgacg caggcgctga gctgagctac
1381 agcacctcga agtgcgcacc atccgctgcg acgactgccg ctgcgagcgc tgcgtcgtca
1441 ctcaccgctc ccggcacgac agcctactat cctttctggt cctccgcgca gccgctgacg
1501 gcagccgagt acaccatcct tagcaccccg aatccaggca tcctcgatcc gctactagtg
1561 gattacgtgc cagggtttac gccggcgcta cggtcggagc tgccgcgggc gctcacgtct
1621 gtgcaagcga acctccatga acttcgcagc tcactgcagt acttcttcgc gtacgcaaca
1681 gctgatcggc cgcacccgtc actgtgcctg gcgccgtcct accactggtg tcaaaacgag
1741 aagagcaagg tgtggtcaat gaggtacgtg gacttgggcg tggtcgcacg gcagcagggt
1801 gtccgtcacg cgcgcagcct gctgcccggc atgagcatgg agcaggaagc gccgacggag
1861 ggcgccgcgg tatatgacgc cgaatcacaa acgtggacct cgcagccacg cagcttcgct
1921 gtcttcacag cgtcggagca gctaccgggc catcaggagc aagcgcatgc caacgggtca
1981 tcgtcttcat ccatggcggc cacggctgct gcttccgcgg atgcggccga ggtgtccacg
2041 ctgagggtgc tcacgtggaa cgttatgttc gatcggtaca gcaaccagcc taccccactc
2101 ggtatgccgg gcatcgactg gtgcagcccg aagcggtacc ccgtgctggc aaagcttatc
2161 gacgccgagg acgccgatgt ggtggggatg caggaagtgg agcggccgtt tgctgagtat
2221 ctcgcggcgc agccgtggtg ccgcgagcgg tacatcatgt cctgcagtcc gcagagcccc
2281 atcttggatc cgtggggcgt gctgctactg gtgcgccgcg gcgggcggtg gccgctgcag
2341 cagctgaaac acctgaatgt gccggcgtgg tcaggccacg tctccctcat gcctgtggct
2401 acgctggatt tgagtgctgc cgccgcccac agcgacaaca gtggcaccgg ctgtggcagc
2461 tcagcgggaa agagcggcat cagaaagctt gcagcatcgc cgcgggtggt gaacgtctgc
2521 tccatgcact tgctggcgcc gtttgtgaag gtgaacgagg tggcccgcac gggtcaggat
2581 caagctctgc gtcatgcgct gacgcggcag ctgcagggcg acacgctcgt gatgggcgac
2641 ttcaacgact ggccgagcaa cgagttcctc atgccgccgg agtcgcggta cgtcgagtgc
2701 tggccgatca ttcaccccgg tgactacggg aaaacaatgg acgagtcgaa caccttctgc
2761 aagctgaaga ttgaagagat cttctttggt cgctcggaca aggtgttcct ccggacaggt
2821 accgccacag cctcgagccc cacccgaggc gtgctgaagc cagtggaggc gcatctagta
2881 ggaacacgga gcgtcaatga cgaaaacggc aaccaagaag caccggcgta tctgttccca
2941 tctgaccact acggtgtcag catgcagttc caagtcctgt ga
//
LOCUS LmREX2 2028 bp DNA 4-APR-2005
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|268507580|
COMMENT VNTDBDATE|370897291|
COMMENT LSOWNER|
COMMENT VNTNAME|LmREX2|
COMMENT VNTAUTHORNAME|Larry|
FEATURES Location/Qualifiers
CDS 1..2025
/vntifkey="4"
/label=ORF
sig_peptide 1..111
/vntifkey="94"
/label=Mito\signal
BASE COUNT 368 a 685 c 645 g 330 t
ORIGIN
1 atgtacggcg tgacacggta cttgcgctac atcgccggcg taggcggcag cggtgggatg
61 gggggtatca gcagcaccgg caccagcagc agtggtggtg atctacgcgg tcccgcaatc
121 agctatcgca actccctcca aatcgccgat gcctttcagc cggtgcagca ccgcaatcag
181 tggcccttcg atcacgtgct catcgacgtc tccttcttcg ccaactccct cgggtacctc
241 acacgcgacc cggtcggcca cgaacgcgac tgcgaaacag tgaagaatgt ccaccgacag
301 ctgcagaccg tcatcctgcg ccgcctccag ccgcgcaaga gcctcgcatt cctgctagac
361 ggcagcgagc cgctctggat gctcgagcat cgacgcctct tccctggccg acggtacgac
421 tccagggtct atcgtagctg tgcctcgccg atgccctacc tgctggaaga gaaactccgc
481 ggcacggcca tggagcagcg caccccgccc tcggaggccg tcatcagcgg tccagccacc
541 cccggactgg cagagggcaa gataagtgcg tatctgctgg accttgcaac ccgcactctc
601 cggcctccga cgttcccgcc gctctccgac tccacggtca cggcgaagga cacagtctgc
661 ctggtcggcg ggcccgagct cgcttggttg gctgttggta tgacgccgtt tcgcaacatc
721 acgagcgtga cgctgcagca gggggagctg aagagctgct cgctgcagga atcgatggag
781 tggatgcggc tggctcacct gctgaaggcg gcgccagagc aggtgaacgg cgacggtggc
841 gaggcgttgg cgctgcagcg gcgcctggcc gctgtccgta cggatctagt tctactcgac
901 cttctggcca atggtcatcc cactacaggg ctgccgcagg tgctggctac gccgttcgcg
961 gacgtgctgg acgcgtacgt ggatatggag aaggaacagc acagcgccgc agcgccaagc
1021 gcgccgcaga acgtcgggcg ccttcgtagc gtattattcg acgaagagcc cgtcacaggc
1081 gtgcaccttg agcagccaag tctgcgactg cgcttagtgt ccctgcagca gctgctcgtg
1141 cgcatcgtgc gggcgttgtc cggagcccac gttggtctgc cagccggcaa ccgccccacc
1201 ccccacgcgg ccacgctgct ggagatgacg ctgcagacac acgggctgct ctgcggtggc
1261 ggcgtgccgt ctcaagcgtg gagccccacg cccgatccgg cagatgcctc gagtggcggc
1321 agcagcaccg ccgccttgaa cggcaccgtg cttctggaca agttcccgag gctgtcggcg
1381 gagatgctcc tacagcacgt gacttacctc ctcagcaacg aagcgaagca gcgaacggcg
1441 aacgcggctg acggtgccgg cgagggcagc gacagcatct acctgagccc gcagcgcaca
1501 cggcactttg ggctgaccgg cgtcgagacg ctcctcctca gcgcaacgca ggcagagcag
1561 gtgaaccaag tattgccctt gtacgttcgc ggccacaccc ttcctgacga ggtggcgtcg
1621 gacatcacgc agacacgcaa catccacgag gccgtgcgca agacgcagcg ggtgctcagt
1681 cgcgtgctgc agcaggccag tcaggaactg gccagtcaat ctggcagtgg caccgccgcg
1741 gtcgatgatg ctggccacaa tggtccgcac cccgctctcg cccatcttcc gtcgcacttg
1801 tttgtgcgca ccgccggcgc tcgcgggcca ccgccggggt gggagtacta cggcgtgcac
1861 cttggcatca aggcagaggc catgaacgtg cggtacaacc tcaacgcatc tgacacggcg
1921 acgctgcacc tcattgacag cagcggtagc agcaacagcg gtggcgtcac cgcgactgca
1981 gggagcgagg ttggtgcgga gtcgacccgc agtggcatgc ccggctga
//
LOCUS LmRGGm 1971 bp DNA 4-APR-2005
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|369836838|
COMMENT VNTDBDATE|370897565|
COMMENT LSOWNER|
COMMENT VNTNAME|LmRGGm|
COMMENT VNTAUTHORNAME|Larry|
FEATURES Location/Qualifiers
primer 151..180
/vntifkey="27"
/label=6760
primer_bind 701..731
/vntifkey="28"
/label=6761
BASE COUNT 446 a 570 c 580 g 375 t
ORIGIN
1 atgctgcagc ggtgcgcgac actgaccggc gcgccactcc gggctcgggg atacagcacg
61 gtgctaggcg cgtgtgctgt gctccatcag cgtgggggct acgaaggccg cggtggtggc
121 cctcggttcg gctacggtga cggcggtccc cctcctggcc agcagcatta tcagcagcaa
181 ggaggcgggt acggaaaccg cgacgatgtt tcgcgcaacc gcggcggcag cgaccgtgga
241 tacgagaacc gcaaccagag ctatgaaaat caccagcagc gctacgtcga tcgcccgcaa
301 agacgtgaca atgatcagca agggtacatc aatcgtcgac agaactacga tgatcgtaac
361 cagggctacg acgatcgcca atcggcaccg cggcgtggca aggagcagta cctcacgcag
421 gatgcagaca ggctactgag aatgaagcat gattacaaga aagcaaaaga cacaaaggag
481 cgctttggga ttacaaaaga ggctcggcgg cttctgcgtc gcacgcgcat cgacccctcc
541 acccaagacg agcggtctgt tgccatcgtg atcaactgcg ccgccacctt ctctgttcca
601 gcaaagatgg aggcggtgga gcaggcgttt caatggatgc gaagcaacat cggtggcgtc
661 tcacctcaga atgtagccct tttcgcgaac gcgttgggtc tcatctcccc cccagaggcg
721 aagcaagtga tgatcagtga ggtcatgccg gctgtgcagt ctgtgatgcg cgaaatggca
781 cccgtggaag tagttatggt gctgcaggca cttcagcgct tgggagtcga ggagaatgaa
841 aagctgcagg acgatctcct ctcccatctc gagccgtgtg tctcctcgat gccggttcag
901 cagttgtcta cactggcgtc tgtcctccat catcactcaa tgcaaacgcg agacaatgcg
961 aagtggaagc agattgcaca cgagacgttg gcacgcgctc ttgcaggggt ggacgggata
1021 cactcacggg aggccatcgt tcttctttgc gccgcaccgt ttttggacgc ctcccagaag
1081 cagattggcc aacttctcgc tcgcgtgaca gaaactgtgc agttccacac ggatgatcag
1141 gtcggggaac tgatgagcgc aatcctccac attagacagc aggtcagtga gccgagtgtc
1201 gagttgacgg cggctgtcga ggagcttcac agggcactga tggcacgttt ggagaaggtg
1261 agcgcttttg tgggagctag aagtgcgacg cgcatctgga actacgcaca cgcttccaac
1321 gtcgagcttc cctccgcgat tcaagagacc atgtgcgctg cactcataca gctcatgaca
1381 ttccgcacca ttccattccg agcattggca cggctgatgg catcgctatc cacacagaag
1441 ctgccctccg ctgaaattct tactgtcgtt gcgaactgca gtgttggagt gcgaccgcct
1501 cggcctgcaa aggcgatttc cccccaagag agtgagatgc cggaggatgg aacggatcac
1561 gagagcatcc gcgccgcggc ctgcgaggcg ctgtacagtc gtcactttgg tactctcact
1621 gagctgcgca tcagccttga aaacgccttt gccaagaacg atgtccctcc caacgacgct
1681 ctcgccaaga cgctgccaga gcatcttctc aaacatgctg cagaagcttc gccgcgacaa
1741 atgctgacgg ccgttgtggc cattgcgcta gcaccggccg attgcccgta tcgaaacaag
1801 actcacgata tggcagtgcg tgccgcagta cttaaagcgc tcgaggacaa ccctaacaag
1861 ttcaagcccg acttgagccc tgagcttgtg gactggttcg tgagcagtat ccccgccgat
1921 tccgattcag cagagatagt ggcggcggtg caaaaggcca ctgcgccgtg a
//
LOCUS Lt\REL2 1260 bp DNA 12-AUG-2002
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|242937499|
COMMENT VNTDBDATE|274806877|
COMMENT LSOWNER|
COMMENT VNTNAME|Lt REL2|
COMMENT VNTAUTHORNAME|Larry|
BASE COUNT 307 a 349 c 358 g 246 t
ORIGIN
1 atgcttcggc gatgcctgct tgcacggctc gtacggcgct cgccagttct cttctcagac
61 gaaaaggaag cgctgtttga gcgctatagt gagattgaaa acgcccactc gcgacgcatt
121 gaagcactga aggacgcggg tctcttcaat gatgagtgga tcgctacgga gaaggtacat
181 ggtgccaact tcgggatata ctcaacagag catgggaaga ttattcagta cgcgaagcgg
241 agcggcatca tgccgccaca cgaacacttt tttggctacc acgttctcat acctgatctc
301 gcaaggtata tcaaacaagg gcgagaactc cttacggaac agctcggcgt gtcacccacc
361 accgtaatca tgaacgggga gctctttggt ggcaagtatg accatccgag cgtgtcaaag
421 cggcggcaga gcgtgatggt ggccggcaag tcacgcacca tcacagccgt gcagaacaat
481 gccttcccac agtactcccc agacctgcat ttctacgcct ttgacatcaa gtaccgcatg
541 accgaagagg aagagtaccg caccatgacg tatgaccaag ccttggccat cttcgagaaa
601 attccgggcc tgctctacgc gagggctatc attcgagggc cgctcagcaa ggtggttgcg
661 ttcgatgtgg agaactttgc cacgacaatt ccatcgctgg tgggcatggg cgactacccg
721 ctcaagggta actgggcaga gggtctcgtc gtaaagcact gtcgtcgtgg agagtccggc
781 tttgacgcaa aaggcgtcac tatcatgaag ttcaagtgta ccgccttcca ggagatctcg
841 actgatcgcc gccaggggcc tcgcgtagac gcgctggagg aggtacggcg gcaagccata
901 caagcctctg gcgtccagct gccggacatg gagagcgtca tccgcgactc cgaggtgcgc
961 aaagcggcac atcacctgct caaccacgta tgtgaaaatc gcctacagag tgtcctctcc
1021 aagatcggta cagacccatt cgagacgcag tctatgaccc ctgcagagct ttctacgctg
1081 ctcgcaaagg atgcgctgaa ggacttcttg aaggaggcgg atgcaaagat cgtcaacaca
1141 ccgctactcg tgcgccggga gatgacccgc tacgttctct tcgaggcacg caagtacgtt
1201 gccagtagat ggaaaggcat cgtcgggcag caaaaggagg cggacagaaa atcgtgctga
//
LOCUS MP19-TAP 8487 bp DNA circular 22-JAN-2009
SOURCE
ORGANISM
COMMENT This plasmid has a BAmHI XbaI cloning site for insertionof genes for tap expression.
Appears to have an error - no complete orf
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT ORIGDB|GenBank
COMMENT VNTDATE|507913479|
COMMENT VNTDBDATE|507913479|
COMMENT VNTNAME|MP19-TAP|
COMMENT VNTAUTHORNAME|Larry|
COMMENT Vector_NTI_Display_Data_(Do_Not_Edit!)
COMMENT (SXF
COMMENT (CGexDoc "MP19-TAP" 0 8487
COMMENT (CDBMol 0 0 1 1 1 0 0 0 0 "" "" 0 0 0 0 (CObList) (CObList) (CObList)
COMMENT (CObList) -1)
COMMENT (CDocSetData 1 1 0 0 0 0 "MAIN" 1 1 1 1 0 0 1 1 1 0 10 10 4294967295 50 0
COMMENT 1 0 (CHomObj 1 0 0 3 100)
COMMENT (CWordArray 47 49 50 48 51 52 81 0 1 3 4 82 5 83 2 6 8 7 9 61 10 11 12
COMMENT 13 14 15 16 17 18 19 84 20 85 21 22 86 87 88 23 54 62 24 89 25 26 55 91
COMMENT 27 28 29 30 31 92 32 34 35 33 53 58 93 56 94 37 57 38 36 39 40 41 42 43
COMMENT 95 44 59 99 96 97 45 100 46) (CWordArray)
COMMENT (CStringList "NheI" "XbaI" "BamHI" "NcoI" "NotI")
COMMENT (CStringList "atg" "gtg") (CStringList "taa" "tga" "tag")
COMMENT (CObList
COMMENT #0=(COligo "7131" "CCAGCGCGGTGGCGGGATCCATGGCGTCGAGCTCGGCTG"
COMMENT "5' oligo Exp 666" 0 (CStringList) 0)
COMMENT #1=(COligo "7114" "CAGCCGGTGGTCTTCTCGTCCATTCTAGAATCGAAGCGGTTATGGTG" ""
COMMENT 0 (CStringList) 0)
COMMENT #2=(COligo "7113" "CCAGCGCGGTGGCGATGGCGTCGAGCTCGGCTG" "" 0
COMMENT (CStringList) 0)
COMMENT #3=(COligo "7112" "CCATCGGGCGCGGATCCCCATGGATGACGATGAAGA"
COMMENT "5' primer - inserts NcoI site downstream of Bam site" 0
COMMENT (CStringList) 0)
COMMENT #4=(COligo "7111" "TCTTCTCTTTTCCATTCTAGACACGTACACGACTAC"
COMMENT "3' pcr primer - changes Bam to Xba site" 0 (CStringList) 0)
COMMENT #5=(COligo "7110" "AGCTAACCATGGCGGATCCATGACGATGAAGA"
COMMENT "5' primer - insert NcoI site" 0 (CStringList) 0)
COMMENT #6=(COligo "7109" "GGCAGTGAGCGCAACGCAAT"
COMMENT "Antisense primer for PCR amplification of a region of pSAP17" 0
COMMENT (CStringList) 0)
COMMENT #7=(COligo "7108" "ACGTTGCCATGGTCCTACGCCACTGTACCTCTACGT"
COMMENT "Sense primer for PCR amplification of a region of pSAP17" 0
COMMENT (CStringList) 0)
COMMENT #8=(COligo "7107" "CCTCACTAAAGGGAACAAAAGCTGGAGCTCCACCGCGGTGGCGG"
COMMENT "Antisense primer for PCR amplification of a region of pSAP1" 0
COMMENT (CStringList) 0)
COMMENT #9=(COligo "7106" "CCTGTCCCCGGGCCATGGGGATCCATGCACGCTC"
COMMENT "Sense primer for PCR amplification of a region of pSAP1" 0
COMMENT (CStringList) 0)
COMMENT #10=(COligo "7105" "GATCTCGTCGTGACCCATCGCGATGCCTGCTTGCC"
COMMENT "Mutagenesis primer - chnages G4454 to C in pSAP1 - destroys NcoI site"
COMMENT 0 (CStringList) 0)
COMMENT #11=(COligo "7104" "CTGCCCGCCACGCAGCGATGGCCGCGAAGG"
COMMENT "Primer for mutagenesis - changing a C 7072 to G in pSAP1" 0
COMMENT (CStringList) 0)
COMMENT #12=(COligo "7103" "TTCTTCCCCTCCTTC"
COMMENT "Sense primer for PCR amplification of a region of pSAP10" 0
COMMENT (CStringList) 0)
COMMENT #13=(COligo "7102" "CTCGTCCATTCTAGA" "" 0 (CStringList) 0)
COMMENT #14=(COligo "7101" "CCCTGTCCCCGGGCCATGGATCCATGACGA" "" 0 (CStringList)
COMMENT 0) #15=(COligo "7100" "CTCCACGTCCATTCTAGA" "" 0 (CStringList) 0)
COMMENT #16=(COligo "7099" "CGCCTAGTTCTCCATGGATGCAAGCGTTGGGCGC" "" 0
COMMENT (CStringList) 0)
COMMENT #17=(COligo "7098" "GAGCTCCACCGCGGTGGCGGCCGCTCTAGTT" "" 0 (CStringList)
COMMENT 0)
COMMENT #18=(COligo "7097" "AACTAGAGCGGCCGCCACCGCGGTGGAGCTC" "" 0 (CStringList)
COMMENT 0)
COMMENT #19=(COligo "7096" "CCTGTCCCCGCCATGGGGGGATCCATGACG"
COMMENT "Mutagenesis pcr primer" 0 (CStringList) 0)
COMMENT #20=(COligo "7061"
COMMENT "ACGTGCGGCCGCCAAAAAACCCCTCAAGACCCGTTTAGAGGCCCCAAGGGGTTATGCTAGTTAGCCAGCCCAAAGGCGAG"
COMMENT "Antisense primer for PCR amplification of a region of 132 bp pcr of G4 central + T7"
COMMENT 0 (CStringList) 0)
COMMENT #21=(COligo "7060"
COMMENT "GCAACCATGGTAATACGACTCACTATAGGGGATACAGGCACCACACATGGATCTTGGGC"
COMMENT "Sense primer for PCR amplification of a region of 132 bp pcr of G4 central + T7"
COMMENT 0 (CStringList) 0)
COMMENT #22=(COligo "7059" "GTGCCTTTCCACCAGATCGATCTG" "" 0 (CStringList) 0)
COMMENT #23=(COligo "7058" "CACGCTGCAGGGATCGGGTACGAATTC" "5' PCR PRIMER" 0
COMMENT (CStringList) 0)
COMMENT #24=(COligo "7057" "ATTAGCGGCCGCCAAAAAACCCCTCAAGACCC"
COMMENT "Antisense primer for PCR amplification of a region of pJAL1-1" 0
COMMENT (CStringList) 0)
COMMENT #25=(COligo "7056" "GCGCATCCATGGTAATACGACTCACTATAGGGTCG"
COMMENT "Sense primer for PCR amplification of a region of pJAL1-1" 0
COMMENT (CStringList) 0)
COMMENT #26=(COligo "7054" "CCATGGCCCGGGGACAGGGGG" "" 0 (CStringList) 0)
COMMENT #27=(COligo "7053" "CTTCATCGTCATGGATCCCCATGGCCCGGGGACAGGGG" "" 0
COMMENT (CStringList) 0)
COMMENT #28=(COligo "7052" "CCCCTGTCCCCGGGCCATGGGGATCCATGACGATGAAG" "" 0
COMMENT (CStringList) 0)
COMMENT #29=(COligo "7051" "TGTGGCTCGCTGCGC" "" 0 (CStringList) 0)
COMMENT #30=(COligo "7050" "AGGCTTCCCGAACGC" "" 0 (CStringList) 0)
COMMENT #31=(COligo "7049" "AACACAAGATCGCCATA"
COMMENT "Antisense primer for PCR amplification of a region of pSAP4" 0
COMMENT (CStringList) 0)
COMMENT #32=(COligo "7048" "ATCTGCGTCACGACGGT"
COMMENT "Antisense primer for PCR amplification of a region of pSAP-3" 0
COMMENT (CStringList) 0)
COMMENT #33=(COligo "7047" "ATCCAGATCTGCCATGG"
COMMENT "Sense primer for PCR amplification of a region of pSAP-3" 0
COMMENT (CStringList) 0)
COMMENT #34=(COligo "7046" "ACGAGTGCTAGCGGTTTCGACCAGAGGAACAC"
COMMENT "Antisense primer for PCR amplification of a region of NSBP-tag" 0
COMMENT (CStringList) 0)
COMMENT #35=(COligo "7045" "GTCACTTCTAGAATGGACGTGGAGGCTTGGCTGGGTG"
COMMENT "Sense primer for PCR amplification of a region of NSBP-tag" 0
COMMENT (CStringList) 0)
COMMENT #36=(COligo "7037" "ATGTCATCCCAGACAGAG"
COMMENT "Antisense primer for PCR amplification of a region of pSAP2" 0
COMMENT (CStringList) 0)
COMMENT #37=(COligo "7036" "ATGACGATGAAGAGGCG"
COMMENT "Sense primer for PCR amplification of a region of pSAP2" 0
COMMENT (CStringList) 0)
COMMENT #38=(COligo "7035" "TCTTCTCTTTTCCATTCTAGA"
COMMENT "Antisense primer for PCR amplification of a region of pFastbac-LtLC-4(B/Xba)"
COMMENT 0 (CStringList) 0)
COMMENT #39=(COligo "7034" "GAACTTTTTGACGTATGATG"
COMMENT "Sense primer for PCR amplification of a region of pFastbac-LtLC-4(B/Xba)"
COMMENT 0 (CStringList) 0)
COMMENT #40=(COligo "7033" "TCTAGACACGTACACGACTACCGAGG" "error" 0 (CStringList)
COMMENT 0)
COMMENT #41=(COligo "7012" "TCCCCGGGGGATCCAGATCTGCCATGGCTCGAATGACGATGAAGAGG"
COMMENT "Mutagenesis of SAP creation of NcoI site" 0 (CStringList) 0)
COMMENT #42=(COligo "7011" "TCCCCGGGGGATCCAGATCTGCCATGGCTCGAATGACGATGAAGAGG"
COMMENT "Mutagenesis of SAp vector - create NcoI site" 0 (CStringList) 0)
COMMENT #43=(COligo "7010" "GTAGTCGTGTACGTGTCTAGAATGGAAAAGAGAAGA"
COMMENT "mutagenesis of Lm LC-4 create XBA site" 0 (CStringList) 0)
COMMENT #44=(COligo "7007" "GCGGCCGCGGTTGACTTCCCCGCGGAAT"
COMMENT "Antisense primer for PCR amplification of a region of pSAP2" 0
COMMENT (CStringList) 0)
COMMENT #45=(COligo "7006" "CCCGCGCCCATGGATGACGATGAAGAGGCGGAT"
COMMENT "Sense primer for PCR amplification of a region of pSAP2" 0
COMMENT (CStringList) 0)
COMMENT #46=(COligo "7005" "TCTAGACACGTACACGACTACCGAGG"
COMMENT "Antisense primer for PCR amplification of a region of pFastbac-LtLC-4(B/B)"
COMMENT 0 (CStringList) 0)
COMMENT #47=(COligo "7004" "GGATCCATGACGATGAAGAGG"
COMMENT "Sense primer for PCR amplification of a region of pFastbac-LtLC-4(B/B)"
COMMENT 0 (CStringList) 0)
COMMENT #48=(COligo "7003" "CATCGAAGGGATTCATCGC"
COMMENT "forward seq primer for pF vectors" 0 (CStringList) 0)
COMMENT #49=(COligo "7002" "CTCCTCCTTTCTTGTTCC" "3' pcr primer for pF vectors"
COMMENT 0 (CStringList) 0)
COMMENT #50=(COligo "7001" "CATCGAAGGGATTCATCGC" "5' pcrprimer for pF vectors"
COMMENT 0 (CStringList) 0)
COMMENT #51=(COligo "7000" "CATCTATAGAGAAGTACACGTAAAAG"
COMMENT "Reverse seq prtimer for pF vectrors" 0 (CStringList) 0)) 1
COMMENT "{(0,1),2}" 0 0 "" 0 4294967295 0 0 0 0 0 0 0 "MAIN" 0 0 30 0
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COMMENT (CObList) (COAPar 25 250 50 0 6 4 3 7) (COAPar 25 250 50 0 6 4 3 7)
COMMENT (COAPar 25 250 50 0 6 4 3 7)
COMMENT (CObList #52=(CRSite (CStringList) "NheI" "gctagc" 2 0 1 8044 0 0 "")
COMMENT #53=(CRSite (CStringList) "XbaI" "tctaga" 2 0 2 7104 0 7921 0 0 "")
COMMENT #54=(CRSite (CStringList) "BamHI" "ggatcc" 2 0 1 6159 0 0 "")
COMMENT #55=(CRSite (CStringList) "NcoI" "ccatgg" 2 0 2 4496 0 7937 0 0 "")
COMMENT #56=(CRSite (CStringList) "NotI" "gcggccgc" 3 0 1 40 0 0 ""))
COMMENT (CObList
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COMMENT #59=(CFSignal (CObList) "Amp r" 4 0 0 941 1801 0 (CStringList)
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COMMENT #60=(CFSignal (CObList) "E. coli ori" 4 0 1 2366 2741 0 (CStringList)
COMMENT (CStringList) 1 1 1 1 "complement(2366..2741)")
COMMENT #61=(CFSignal (CObList) "3' end of 13k RNA" 53 0 0 2938 3065 0
COMMENT (CStringList) (CStringList) 1 1 1 1 "2938..3065")
COMMENT #62=(CFSignal (CObList) "DST RNA 5'utr" 4 0 0 6075 6158 0 (CStringList)
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COMMENT #63=(CFSignal (CObList) "S3106" 4 0 0 6090 6108 0 (CStringList)
COMMENT (CStringList) 1 1 1 1 "6090..6108")
COMMENT #64=(CFSignal (CObList) "flag tag" 4 0 0 6 29 0 (CStringList)
COMMENT (CStringList) 1 1 1 1 "6..29")
COMMENT #65=(CFSignal (CObList) "reverse primer" 27 0 1 109 124 0 (CStringList)
COMMENT (CStringList) 1 1 1 1 "complement(109..124)")
COMMENT #66=(CFSignal (CObList) "forward primer (2481)" 27 0 0 2847 2863 0
COMMENT (CStringList) (CStringList) 1 1 1 1 "2847..2863")
COMMENT #67=(CFSignal (CObList) "T7 promoter" 30 0 0 2890 2909 0 (CStringList)
COMMENT (CStringList) 1 1 1 1 "2890..2909")
COMMENT #68=(CFSignal (CObList) "DHFR 3' UTR + 5' UTR DST RNA" 50 0 0 4797 6154
COMMENT 0 (CStringList) (CStringList) 1 1 1 1 "4797..6154")
COMMENT #69=(CFSignal (CObList) "NeoR fused to DHFR 5'" 4 0 0 3926 4726 0
COMMENT (CStringList) (CStringList) 1 1 1 1 "3926..4726")
COMMENT #70=(CFSignal (CObList) "CBP" 21 0 0 7944 8024 0 (CStringList)
COMMENT (CStringList) 1 1 1 1 "6875..6955")
COMMENT #71=(CFSignal (CObList) "TEV cleavege" 21 0 0 8049 8069 0 (CStringList)
COMMENT (CStringList) 1 1 1 1 "6980..7000")
COMMENT #72=(CFSignal (CObList) "ProtA" 21 0 0 8077 8486 0 (CStringList)
COMMENT (CStringList) 1 1 1 1 "7008..7417")
COMMENT #73=(CFSignal (CObList) "Lt REN2" 21 0 0 6164 7919 0 (CStringList)
COMMENT (CStringList) 1 1 1 1 "")) (CObList) (CObList) (CObList) (CObList)
COMMENT (CObList) (CObList)
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FEATURES Location/Qualifiers
CDS 3518..4729
/vntifkey="4"
/label=DHFR/NeoR
splicing_signal 3518..3937
/vntifkey="38"
/label=DHFR\SAS
CDS 941..1801
/vntifkey="4"
/label=Amp\r
CDS complement(2366..2741)
/vntifkey="4"
/label=E.\coli\ori
misc_RNA 2938..3065
/vntifkey="53"
/label=3'\end\of\13k\RNA
/note="Accesion # X51733"
CDS 6075..6158
/vntifkey="4"
/label=DST\RNA\5'utr
CDS 6090..6108
/vntifkey="4"
/label=S3106
CDS 6..29
/vntifkey="4"
/label=flag\tag
primer complement(109..124)
/vntifkey="27"
/label=reverse\primer
primer 2847..2863
/vntifkey="27"
/label=forward\primer\(2481)
promoter 2890..2909
/vntifkey="30"
/label=T7\promoter
3'UTR 4797..6154
/vntifkey="50"
/label=DHFR\3'\UTR\+\5'\UTR\DST\RNA
CDS 3926..4726
/vntifkey="4"
/label=NeoR\fused\to\DHFR\5'
misc_feature 7944..8024
/vntifkey="21"
/label=CBP
/note="calmodulin binding peptide"
misc_feature 8049..8069
/vntifkey="21"
/label=TEV\cleavege
/note="TEV cleavege site"
misc_feature 8077..8486
/vntifkey="21"
/label=ProtA
/note="Protein A fragemnt"
misc_feature 6164..7919
/vntifkey="21"
/label=Lt\REN2
BASE COUNT 2008 a 2330 c 2266 g 1883 t
ORIGIN
1 aattggatta taaagatgat gatgataaat aactagagcg gccgccaccg cggtggagct
61 ccagcttttg ttccctttag tgagggttaa ttccgagctt ggcgtaatca tggtcatagc
121 tgtttcctgt gtgaaattgt tatccgctca caattccaca caacatacga gccggaagca
181 taaagtgtaa agcctggggt gcctaatgag tgagctaact cacattaatt gcgttgcgct
241 cactgcccgc tttccagtcg ggaaacctgt cgtgccactg gcgtaatagc gaagaggccc
301 gcaccgatcg cccttcccaa cagttgcgca gcctgaatgg cgaatggcgc gaaattgtaa
361 acgttaatat tttgttaaaa ttcgcgttaa atttttgtta aatcagctca ttttttaacc
421 aataggccga aatcggcaaa atcccttata aatcaaaaga atagaccgag atagggttga
481 gtgttgttcc agtttggaac aagagtccac tattaaagaa cgtggactcc aacgtcaaag
541 ggcgaaaaac cgtctatcag ggcgatggcc cactacgtga accatcaccc taatcaagtt
601 ttttggggtc gaggtgccgt aaagcactaa atcggaaccc taaagggagc ccccgattta
661 gagcttgacg gggaaagccg gcgaacgtgg cgagaaagga agggaagaaa gcgaaaggag
721 cgggcgctag ggcgctggca agtgtagcgg tcacgctgcg cgtaaccacc acacccgccg
781 cgcttaatgc gccgctacag ggcgcgtccc aggtggcact tttcggggaa atgtgcgcgg
841 aacccctatt tgtttatttt tctaaataca ttcaaatatg tatccgctca tgagacaata
901 accctgataa atgcttcaat aatattgaaa aaggaagagt atgagtattc aacatttccg
961 tgtcgccctt attccctttt ttgcggcatt ttgccttcct gtttttgctc acccagaaac
1021 gctggtgaaa gtaaaagatg ctgaagatca gttgggtgca cgagtgggtt acatcgaact
1081 ggatctcaac agcggtaaga tccttgagag ttttcgcccc gaagaacgtt ttccaatgat
1141 gagcactttt aaagttctgc tatgtggcgc ggtattatcc cgtattgacg ccgggcaaga
1201 gcaactcggt cgccgcatac actattctca gaatgacttg gttgagtact caccagtcac
1261 agaaaagcat cttacggatg gcatgacagt aagagaatta tgcagtgctg ccataaccat
1321 gagtgataac actgcggcca acttacttct gacaacgatc ggaggaccga aggagctaac
1381 cgcttttttg cacaacatgg gggatcatgt aactcgcctt gatcgttggg aaccggagct
1441 gaatgaagcc ataccaaacg acgagcgtga caccacgatg cctgtagcaa tggcaacaac
1501 gttgcgcaaa ctattaactg gcgaactact tactctagct tcccggcaac aattaataga
1561 ctggatggag gcggataaag ttgcaggacc acttctgcgc tcggcccttc cggctggctg
1621 gtttattgct gataaatctg gagccggtga gcgtgggtct cgcggtatca ttgcagcact
1681 ggggccagat ggtaagccct cccgtatcgt agttatctac acgacgggga gtcaggcaac
1741 tatggatgaa cgaaatagac agatcgctga gataggtgcc tcactgatta agcattggta
1801 actgtcagac caagtttact catatatact ttagattgat ttaaaacttc atttttaatt
1861 taaaaggatc taggtgaaga tcctttttga taatctcatg accaaaatcc cttaacgtga
1921 gttttcgttc cactgagcgt cagaccccgt agaaaagatc aaaggatctt cttgagatcc
1981 tttttttctg cgcgtaatct gctgcttgca aacaaaaaaa ccaccgctac cagcggtggt
2041 ttgtttgccg gatcaagagc taccaactct ttttccgaag gtaactggct tcagcagagc
2101 gcagatacca aatactgtcc ttctagtgta gccgtagtta ggccaccact tcaagaactc
2161 tgtagcaccg cctacatacc tcgctctgct aatcctgtta ccagtggctg ctgccagtgg
2221 cgataagtcg tgtcttaccg ggttggactc aagacgatag ttaccggata aggcgcagcg
2281 gtcgggctga acggggggtt cgtgcacaca gcccagcttg gagcgaacga cctacaccga
2341 actgagatac ctacagcgtg agctatgaga aagcgccacg cttcccgaag ggagaaaggc
2401 ggacaggtat ccggtaagcg gcagggtcgg aacaggagag cgcacgaggg agcttccagg
2461 gggaaacgcc tggtatcttt atagtcctgt cgggtttcgc cacctctgac ttgagcgtcg
2521 atttttgtga tgctcgtcag gggggcggag cctatggaaa aacgccagca acgcggcctt
2581 tttacggttc ctggcctttt gctggccttt tgctcacatg ttctttcctg cgttatcccc
2641 tgattctgtg gataaccgta ttaccgcctt tgagtgagct gataccgctc gccgcagccg
2701 aacgaccgag cgcagcgagt cagtgagcga ggaagcggaa gagcgcccaa tacgcaaacc
2761 gcctctcccc gcgcgttggc cgattcatta atgcagctgg cgaaaggggg atgtgctgca
2821 aggcgattaa gttgggtaac gccagggttt tcccagtcac gacgttgtaa aacgacggcc
2881 agtgaattgt aatacgactc actatagggc gaattgggta ccgggccccc cctcgaggtc
2941 gacggggtga tggagagaat ggttgaccat gaggacgccg atgggcgatg cgccagcgcg
3001 tgcttgcgta cttcaatcgt ttttcatctt gattcagagc taagtagtag cacaccacag
3061 caagcgtaat catgtagcat gtatgcaggt gcacgagtag gcactctctg tctctgtccg
3121 gcatctatga tgctctccgg ccgcgtgcgc gcgacgcctc tgtgtgagtg ctcgtgtgag
3181 tgtgtgagag ctgtccaggc ctttcctctg cctactcgtc ccacgctcag gcaggcacag
3241 aggaatgaaa aggaagacga ggacgcaacg ccaggcgcat cgacatcgcg cacgtgtttg
3301 cggtgtactg tgcgtcgatg atcgagcggc caagcgtcca gcttcacgcg aggaggactg
3361 catcgctgct cctgtgcgcg tgcgtgcacg cgtcaaggca cgctcgattc gttcccaggg
3421 tggataccct cccccctccc ccagctgcag acaaccccca ccctctcgag gcttgcaccc
3481 aggctcgtca gtctctctac cactttctgc cttctgtagt gcaccccacc cctgcattct
3541 cctctctctc acacacacac acacacacac acacacacac acacacacac gtacacacgt
3601 acacacacac gtgcgcatgc ttgacgcata cgcgacgaat tcgaaagctc acctcattcc
3661 tccctcctca caccatcatc ggcatccata gagacacgtg cgcgtagaac gatacagctc
3721 acgcgcacag agaggcgtgt tctggtcgtg cgcatcatcg gcacagcact ggcggacgaa
3781 actcgcacac aggcacgccg cctcctttca cccgtcatag atagttgaat tagacgccct
3841 cctcctccct catcatcgcc gtcgtcatcc gggtccgagc actagtcgcg tgtggcctcg
3901 aacaccgagc gaccctgcag ccaatatggg atcggccatt gaacaagatg gattgcacgc
3961 aggttctccg gccgcttggg tggagaggct attcggctat gactgggcac aacagacaat
4021 cggctgctct gatgccgccg tgttccggct gtcagcgcag gggcgcccgg ttctttttgt
4081 caagaccgac ctgtccggtg ccctgaatga actgcaggac gaggcagcgc ggctatcgtg
4141 gctggccacg acgggcgttc cttgcgcagc tgtgctcgac gttgtcactg aagcgggaag
4201 ggactggctg ctattgggcg aagtgccggg gcaggatctc ctgtcatctc accttgctcc
4261 tgccgagaaa gtatccatca tggctgatgc aatgcggcgg ctgcatacgc ttgatccggc
4321 tacctgccca ttcgaccacc aagcgaaaca tcgcatcgag cgagcacgta ctcggatgga
4381 agccggtctt gtcgatcagg atgatctgga cgaagagcat caggggctcg cgccagccga
4441 actgttcgcc aggctcaagg cgcgcatgcc cgacggcgag gatctcgtcg tgacccatgg
4501 cgatgcctgc ttgccgaata tcatggtgga aaatggccgc ttttctggat tcatcgactg
4561 tggccggctg ggtgtggcgg accgctatca ggacatagcg ttggctaccc gtgatattgc
4621 tgaagagctt ggcggcgaat gggctgaccg cttcctcgtg ctttacggta tcgccgctcc
4681 cgattcgcag cgcatcgcct tctatcgcct tcttgacgag ttcttctgag gggatcggca
4741 ataaaaagac agaataaaac gcacgggtgt tgggtcgttt gttcggatca ctagtgatcc
4801 cgcccgcacc cgcgcgcgct caggccgcgt gtcgtcgtgc tctttccatt ttttttttgt
4861 gtgtggtggt gatttgagct gctctccgtt gtgtgctggg gaccctcctt ccctcgatct
4921 cctcgtgcgg ggtctccgac gcgcagacgc ggtgcgtgcg agcgtgcacg tgctgtcgcc
4981 gtggctgtag ttgcgagcgg agagagagag agagggaggg agggagggca gagggcagag
5041 gacatgcggg tgggaacgtg caccggcctc gtctcacgca gctggagccc acgaatgcca
5101 ccaccacacc cttcttcccc ccccctccct cttcttccca cggcggcgac gacgacgggg
5161 gctcagctca cgcttctgta gggtattata ttaaagcaca tgtgcgtgct gtgcttcggc
5221 ttcttgttgg tggtcgttcg ctttcaagtc cacgactcct gccgttgctc accgccgggc
5281 tgtcttcttt cgcccctccc tcggtgcctc ttccgccgcc gcacgcgtgc gctgatcacg
5341 cgtcttgcgt gatgtgcctg tgtgtataca caccgtgcac ggagagagcg agcgagcgag
5401 agagagagag ggcgagagga agaatggccg gtgcctcgcg tgggcaagcg tgcgcgagtt
5461 tgtcgtgtcg ctgcgccgcg tggatgtcgc gcagcgcaag accccgtgcg cctgaaacgt
5521 gaagggaggt cgagaagcgt gccgcatgag gccttaaggc aggaaagtga aaagagctcg
5581 acgcgagtgc agcacgcgcg acatcgaaca ggacggaata gacactcagc cccttcccct
5641 ttcaaaaact gaatggacgg acatcgtaac gcgcttctct cccctccact ccccctgtcc
5701 ctgtctcctt gacgtgtgct gctctcgtga gcgacagatg aagcgaggcg tagaaggaaa
5761 ggggggggag cgaggcctgc acacacacac acacacacac acacacacac acacacacac
5821 acacacacac acacacgaaa agcaagtttg aggcagacgt ggtttcacac gattcctgtg
5881 caagaagcgt gcctgcgtga cggtgtggct gtgtatgcat gcgtgaaggg ttaccgcaac
5941 gatgcgcaat ggactccccc gctttccatt tcgtcacctt ccgcctctct ctctctctct
6001 ctcaccatct acgcgtgcac atcatcaact gtctcttgtc ggtgctcacc accctcaacc
6061 acccctcact ttcaaggctt cccgaacgca cacaaaaggc gtgaaaaccg ctcgcgtgtg
6121 ttgagccgtc caccgtagcc ctccccctgt ccccggggga tccatgcgct tctgtaaata
6181 gacgtctttt attacgattg ccagcaatgg tgattgccgg ccttctgcgg cgaacaccgc
6241 gcgcagcagg tacgcagacc cgcaggaatg cacttagttt tgctgcagcg actagcagta
6301 gcagcagcct cgttagcccc tctggcgaga aagctcccgt gtactacaac ttttcgacgc
6361 cgttgagtgt gctccgtggt gcaacggatg gcgaaagcgt gtctcaccga cgccaacgcc
6421 gagaagtacc ggctcgagaa ggaggacttc tacttgtggc accgcgctcg ccgaactcga
6481 gcgaccacct tcagcaactg aacatttttc gacgcgactt ctttgacttt ggcaacgctg
6541 caaagctcac ccagaatatc atggtaagcg tggacacaag cacccgccgc ttcctcgaaa
6601 tgttctgtga ttttgatgcc aaacgctgca agttgtgcaa tgagtcgttc actcagtggc
6661 acattcacac caatggtatt ccacacgggg ggagggaggg gatgctgctg gagcttgtcc
6721 gcccctattg tggaacccca gatgaactga tagagctgtg gtggaagcgg ctgaacgcgt
6781 gtgctgcctt tcacaggatt cccgcactga gccacgacaa cccgaacgaa cgcaagcgac
6841 gtctactgta tctgttgaag gtgctcaagg accgcggcat cctcgtggag acgttcaatg
6901 taagtgacaa ccagtccgtc aactcagcgc ggtcgtggga gtttgagcga cttgagttcg
6961 tgggtgataa tgttgtcaag tacgtgctga acaacgtcat tacctgcacg tttccacccc
7021 atgagggcgg tacaaaggga aagctcacgt gtttccaatt cgtgatggac ggcaacgatg
7081 gcttggcacg gggctacgac catctagatc ttcagcagct cgcttcaagc gctagggtag
7141 tcagcaaatt caagagtgac atcgtcgaga ccctcttcgc cgagctgcag atgtatctgt
7201 ggtgcacgca gcacgacgtc ggcacctgcc cgcttgtgtt tccatttacg aaggatatct
7261 acaccctacg ggcactggtg cagcatgtgc tgtacgagct ggctattgag atttttctgt
7321 accacatccg ccacattaac ggtgtgctcc aacgcgtgat gcgagagaat aacctgcagt
7381 tcgtaaaaac agacgcttcg ctaaagccca agtctggcac aaggacgggg agcattggtt
7441 tcattagccg ccgtggtgac tggaatgata gcgacgatga ctacgactcc ccgcaaaact
7501 actctgtgcc agtgctgcct gctccaacgt caactctaac gaaagtgcgc tcgccgcgca
7561 cacacctaca agacttcggc gcagcgctct tcttggcctc cacaaactat gataacttca
7621 agcgggtggt accgattgga ggtctcttgc ctcggccttt tgcgaggaaa gatttatctg
7681 tgatcccaaa ctatatgccg catcttcaga gagacagcgc aatgacgctg aagattagga
7741 gggccgggaa tgccggctgg tcaactctgc gtaccaccac agcagctccg gccacgatgg
7801 aaggctttgt cgatgggctc gcgctacgtc caaaacgaac accgcgtgtc ggaggtgaac
7861 cagtaggctt gtcggtgccg cgtctgaagg atgaggagct cattcaagaa ctgatttaat
7921 ctagaggctc cggctccatg gaaaagagaa gatggaaaaa gaatttcata gccgtctcag
7981 cagccaaccg ctttaagaaa atctcatcct ccggggcact tgattatgat attccaacta
8041 ctgctagcga gaatttgtat tttcagggtg agctcaaaac cgcggctctt gcgcaacacg
8101 atgaagccgt ggacaacaaa ttcaacaaag aacaacaaaa cgcgttctat gagatcttac
8161 atttacctaa cttaaacgaa gaacaacgaa acgccttcat ccaaagttta aaagatgacc
8221 caagccaaag cgctaacctt ttagcagaag ctaaaaagct aaatgatgct caggcgccga
8281 aagtagacaa caaattcaac aaagaacaac aaaacgcgtt ctatgagatc ttacatttac
8341 ctaacttaaa cgaagaacaa cgaaacgcct tcatccaaag tttaaaagat gacccaagcc
8401 aaagcgctaa ccttttagca gaagctaaaa agctaaatgg tgctcaggcg ccgaaagtag
8461 acgcgaattc cgcggggaag tcaaccc
//
LOCUS Lt\REN2 1756 bp DNA 17-SEP-2009
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT ORIGDB|GenBank
COMMENT VNTDATE|510760455|
COMMENT VNTDBDATE|529595352|
COMMENT VNTNAME|Lt REN2|
COMMENT VNTAUTHORNAME|Larry|
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BASE COUNT 409 a 478 c 480 g 389 t
ORIGIN
1 atgcgcttct gtaaatagac gtcttttatt acgattgcca gcaatggtga ttgccggcct
61 tctgcggcga acaccgcgcg cagcaggtac gcagacccgc aggaatgcac ttagttttgc
121 tgcagcgact agcagtagca gcagcctcgt tagcccctct ggcgagaaag ctcccgtgta
181 ctacaacttt tcgacgccgt tgagtgtgct ccgtggtgca acggatggcg aaagcgtgtc
241 tcaccgacgc caacgccgag aagtaccggc tcgagaagga ggacttctac ttgtggcacc
301 gcgctcgccg aactcgagcg accaccttca gcaactgaac atttttcgac gcgacttctt
361 tgactttggc aacgctgcaa agctcaccca gaatatcatg gtaagcgtgg acacaagcac
421 ccgccgcttc ctcgaaatgt tctgtgattt tgatgccaaa cgctgcaagt tgtgcaatga
481 gtcgttcact cagtggcaca ttcacaccaa tggtattcca cacgggggga gggaggggat
541 gctgctggag cttgtccgcc cctattgtgg aaccccagat gaactgatag agctgtggtg
601 gaagcggctg aacgcgtgtg ctgcctttca caggattccc gcactgagcc acgacaaccc
661 gaacgaacgc aagcgacgtc tactgtatct gttgaaggtg ctcaaggacc gcggcatcct
721 cgtggagacg ttcaatgtaa gtgacaacca gtccgtcaac tcagcgcggt cgtgggagtt
781 tgagcgactt gagttcgtgg gtgataatgt tgtcaagtac gtgctgaaca acgtcattac
841 ctgcacgttt ccaccccatg agggcggtac aaagggaaag ctcacgtgtt tccaattcgt
901 gatggacggc aacgatggct tggcacgggg ctacgaccat ctagatcttc agcagctcgc
961 ttcaagcgct agggtagtca gcaaattcaa gagtgacatc gtcgagaccc tcttcgccga
1021 gctgcagatg tatctgtggt gcacgcagca cgacgtcggc acctgcccgc ttgtgtttcc
1081 atttacgaag gatatctaca ccctacgggc actggtgcag catgtgctgt acgagctggc
1141 tattgagatt tttctgtacc acatccgcca cattaacggt gtgctccaac gcgtgatgcg
1201 agagaataac ctgcagttcg taaaaacaga cgcttcgcta aagcccaagt ctggcacaag
1261 gacggggagc attggtttca ttagccgccg tggtgactgg aatgatagcg acgatgacta
1321 cgactccccg caaaactact ctgtgccagt gctgcctgct ccaacgtcaa ctctaacgaa
1381 agtgcgctcg ccgcgcacac acctacaaga cttcggcgca gcgctcttct tggcctccac
1441 aaactatgat aacttcaagc gggtggtacc gattggaggt ctcttgcctc ggccttttgc
1501 gaggaaagat ttatctgtga tcccaaacta tatgccgcat cttcagagag acagcgcaat
1561 gacgctgaag attaggaggg ccgggaatgc cggctggtca actctgcgta ccaccacagc
1621 agctccggcc acgatggaag gctttgtcga tgggctcgcg ctacgtccaa aacgaacacc
1681 gcgtgtcgga ggtgaaccag taggcttgtc ggtgccgcgt ctgaaggatg aggagctcat
1741 tcaagaactg atttaa
//
LOCUS LtLC-\4 1866 bp DNA 21-JUN-2003
SOURCE
ORGANISM
COMMENT The TAA ter codon was inserted - the actual C ter sequence is not yet know.
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|274813276|
COMMENT VNTDBDATE|306003039|
COMMENT LSOWNER|
COMMENT VNTNAME|LtLC- 4|
COMMENT VNTAUTHORNAME|Larry|
FEATURES Location/Qualifiers
sig_peptide 1..219
/vntifkey="94"
/label=Mito\signal\(Mito\Prot)
CDS 220..1863
/vntifkey="4"
/label=Lt\LC-4\ORF\(-\mito\sig)
BASE COUNT 372 a 516 c 556 g 422 t
ORIGIN
1 gcccttatga cgatgaagag gcggatcgga gtctttgctg ctacggctgc tgcgtgccgc
61 tgcgcgctgc gcagactgcg ccacgtatcg cctagttcta tgcaagcgtt gggcgctgtc
121 gcctccgcga aaggcacctc acatgccgct ctatgggggc ctgtacggaa tcaaagtgcg
181 atcccggacc gccgtttcca ctgcagcgtt tgcaagaagt cgtttcgctt ggagatggcg
241 gcaaagctgc accttcagca ggtgcacagc ggtgagggca cagtggaggc aggtgcgggg
301 cccggacagg gggaggagca gacgctgcag acaccggtgg gggtgtttcg gaatgcacct
361 ccgcaggcac cgaccgtcgt gacgcagatc gttccacatt ctaacgagcg cgctccgcgt
421 cgtgagaagc ctgcgccaaa gccacttcac caagccgaac gcgaggtgcc aagtcttgtg
481 atggaaaaga tgctctctgt ctgggatgac ataggtgtga agcggatggg gaatgagttt
541 gttcacagta gtatggtgat gcgagtgttt gctgctcgtc cgtccgatag ctccgagccg
601 gtgtatgaag ttatgaatcc agagggtggg agcccgttcg aaggtggctc gtctaccgcg
661 gatacggcta gtcctattac gaggaagaac gaaaacgcca aattttacag catcgctgtc
721 ggtgacgcgt ttgcgatggc gtctgacgag gctttgggcc cattgcgccc cgctcggtgc
781 ccgaacccat ttctccgaaa actagcaaag gatacggcaa aaatttcccc gagggtggaa
841 tcgagagaac agcaaacggc accggtaacg ccttttggac agctcccgat gtttgggcaa
901 gctgcttcac ctgctacggt cccagctcac agcgcctccg aggaaccatc gaccacgacg
961 aatagtgtgg tttcttctcc cttcgccgcc ggctccaata attcaccttt tgcggggacc
1021 atgagctttc cattgtctgg gcaagggctc tttccgtttg actcgttgca gggtccacca
1081 gagccggccg ctgctccacc cgggatcgcc gagggatcgg gggcttcctc tgaggcaccg
1141 gcttccccgt ttgcttctgc ttctggtgct cttcctccat ccccgtttgc cgcagctcca
1201 agccctttta ccgaatcttc tttggcaacc ccctcgtatg ccgtggggga cgcagccacg
1261 atggcaagac gcaccgaggc ttctgacggc ggcttcttcc cctccttctc cacgtcttct
1321 gcgaccgcgc cggctgaggc ggtgactacc cctacgcatg tatgcatcgt ttgcgagaag
1381 aactttttga cgtatgatgg acttcgaatg cacagtaagg ccaaacatgg aaaggagctg
1441 ccaaaggagc tgccaaaggg gcggggaagt gagaaacgtg aggttccgga cttacccgcc
1501 ttcattccta gtccggtgga tctcacgatg acatcaccct ttggtttgtc ggcgcagcga
1561 tcggcgtgga cggaggtgga gctaaaaccg tacgcgcagt ccgtgagtaa cattacggtg
1621 gtggggcggg tgctggatac cgaattttcg agcgatggat cgttgctctt ttctcttttt
1681 gtccccaatt cggacgaaaa tgattctgag gtgattcccg ttcgctgcac ttcagacgca
1741 ttgagaacgc ttggtagaaa gctcgggtat ggcgatcttg tgttcgcatg tggctcgctg
1801 cgcattttac cgttcacgga taataaaaca cagaagaaat actcctcggt agtcgtgtac
1861 gtgtaa
//
LOCUS LtMRP1 702 bp DNA 2-JUN-2003
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|200007065|
COMMENT VNTDBDATE|304354196|
COMMENT LSOWNER|
COMMENT VNTNAME|LtMRP1|
COMMENT VNTAUTHORNAME|Tel: (301) 216-0586|
BASE COUNT 171 a 213 c 186 g 132 t
ORIGIN
1 atgttccgct ctgtgtctgc aagacttcct ttggcgacgg cagccacctc gtcggtgcgc
61 tttcagtcta gttccgccac acctgccatc aaccaaaacc agcgcaacca gtaccgccgc
121 agctttctct cgacaaactc gttgcccaag tttgagatac acgacgtgcg cgatgacccg
181 gagcacggga gcatgacccg tgtgtctgtg gatggcaagc agttgcttgt ttctcagttc
241 ccacaactcg gccctcgcaa ggcggacccg aacgacacaa ccccgcaatt tgatcgggac
301 cgtcgcatct cgatgcgttt ccgtcatatt gaccttgccg gcttcgtcag cgtcgtggag
361 aaccgcatcc cgagccacca cgtcaagaac aacgctttcg acatggcgtt tgagaagacg
421 acgaatggct acgtgttgaa aggccaggtg caccgaagca actcgcaggt gaatgaagag
481 tgggcggtgc gcttcgaaaa tcagtttgcc gtgacgattg agcacttcct ggagagtgcg
541 ctgacggaga gcttcggttt cgcccagcac cagcgggccc tggcgcgcgg gtatagtcct
601 cagagcaaca acgtcaagag caaccaggac cgcaacagaa accaaaaccg taatcaaaac
661 cgtcgccgta acaacaacag catcgctgaa aaccaagaga gc
//
LOCUS LtMRP2 863 bp DNA 6-AUG-2002
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|195570535|
COMMENT VNTDBDATE|274299102|
COMMENT LSOWNER|
COMMENT VNTNAME|LtMRP2|
COMMENT VNTAUTHORNAME|Larry|
FEATURES Location/Qualifiers
CDS 135..860
/vntifkey="4"
/label=ltp26pro
misc_feature 242..730
/vntifkey="21"
/label=PCR\for\RNAi
BASE COUNT 162 a 290 c 243 g 168 t
ORIGIN
1 cccacccacc cacccccact gtccaagttg cggaccttta aaaggtatat cgatcgttat
61 tcacccgctc tcgtcatccc tccccccccc ctcgccctcc cccttttgtt gcacactcga
121 cgtcctacct gatcatgctt cgtcgtgttc ccacgttgtg cgcgctgcac cgacgcgcag
181 gcgtcacggc catggccgtc gctggtggcc tctctgccag cgcgagcctg tttgcccacc
241 aggcatcccc tctgcagcag gtacgctggg cctcctctga tgctgcggca ccagcgagca
301 acagcgcaca acgcagcagc aatagaacta gcattgttca gggtcagcga gggcggcgtg
361 acgcgatgcc ccccgccttc gacattgtcc actggaacga cgaggacatc acggcaggcc
421 acctgctgcg tgtagcgcac cgagacggct tcatcgttct ggattatcat cggcagcgtt
481 gtaccaccac cgagcttcgt gaggatggca gtcgtgcggc gagtccaaac cgtgcagaga
541 gggtggtgac agtgactctg ccacccgtgt acgtggcgcg cttccttggg gtgctggagg
601 ggcgcatgag caagctggag gtgcagtcac gctacacgaa cgcctcgttt gcgccgaaca
661 cagcgaaggg caagcatcac tacactctcc actgcacgtc catgaagccg accactggcc
721 aaattcagac ggtggacggc gccgacgtgc acgaggaaac agtagaatgg acggtggagt
781 tcgatgccgc ggagtcgctc atgctgcacc gctttctcac gcaggccctt cattttaaca
841 cggggttttc ccgccatggg tag
//
LOCUS LtREL1 1464 bp DNA 3-JAN-2002
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|242679682|
COMMENT VNTDBDATE|254686706|
COMMENT LSOWNER|
COMMENT VNTNAME|LtREL1|
COMMENT VNTAUTHORNAME|Isolde|
BASE COUNT 286 a 450 c 477 g 251 t
ORIGIN
1 atgcgtcgac tggcactgcg ttgtgcgcca cgctgctgtc gtgccactct gtgcaacagt
61 cgaggcagcg gcagcgtcct gaggcgccag gcaccggcgc tcgtaccgag ggccgccgtc
121 tctccgccat gcctccccac cgccagtacc gcctgcttgc agagcctggc cacgtcgcgc
181 cgctgctacc tgccgcttcc gaaagaccag gacgacttct cggcctacgc ggagattgac
241 ctacccacag agacgcgcat cgaggcaatc aggcgcacgg tgatcgccaa ccaggagtgg
301 gtcgcgtgcg agaaggtgca cggcacaaac tttgccatct acctcatcaa cgaaaatgag
361 gtgcggttcg caaagcgcag cggcatcatg gacccgaacg agcacttctt cggctaccac
421 ctcctcatcg acgacttcac ggcgcaggtc cgggcgttgt gcgcgctgct gaagcgcaag
481 tacggcgtca caggtcgcat gggccgcgtg gtgcttcacg gggagctgtt cggggccaag
541 tacaagcatc cgctggtgcc cacgagcaag aagtggtgca cgctgccgaa taagaagcgg
601 attccgatct cgggggtgga gatacagagc gagccgttcc cgcagtacag cccggagctt
661 cacttcttcg ccttcgacgt caagtactcc gtgtcgggtg ctgaggagga cgtggtgttg
721 ctgccgttcg acgacttcac ggaggtgtgc gcgcaggtgc ccaatctcct gtacgcgagg
781 tcgctggtgc gtggcacact ggacgagtgt ctcgccttcg atgtggagaa ctttgtcaca
841 ccgctgcccg cgctgctcgg tctgggcaac taccctctcg aaggcaacct cgccgagggc
901 gtcgtcatac gccacgtgcg ccgcggcgac ccggcggtgg agagcagcgg ggtctcgacg
961 atcatcaagc tgcgctgttc ttccttcatg gagctcaagc atcccggcaa gcagcaggaa
1021 ctgaaggcaa cgttccttga caccgtgcgt gccggcgcgc tgcaacgcgt gcgcggaggc
1081 aagaaagtga cggtgctgtt ggacgcgttg ctgccgaacc tagaggcagc cgcaaacgcg
1141 ctgctgctga acaacgtcag cgagggtcgt gtgagcaacg tgttgtcgaa gatcggccgc
1201 gagccgctgc tgaccggcaa agtaacgcag cacgacgtgg tgcagatgct cgcgcaggat
1261 gccctgaagg acttcctcaa ggagacggac ccggtcatat tgaacacggc cttatccttt
1321 cgcaagacgc tcatccgaag cgtgtacttg gcggcggagg agctgctgca gggagaatgg
1381 aagcgcatca tagaccgact acaggcgtcc caggcagaga tggacgccgc gatggccgcg
1441 caggagaagg cagaggcgca gtga
//
LOCUS Lt\ren2 7315 bp DNA 23-SEP-2009
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|530104910|
COMMENT VNTDBDATE|530104910|
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COMMENT -7315) 1 0 1 0 0
COMMENT (mapper: 18.5836 -4.12872 39 39 0.01 10 14 7315 7315 1 0 1)
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COMMENT (CObjectList
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COMMENT (CObjectList
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COMMENT (LOGPEN 0 0 10079436) 2 (LOGBRUSH 0 13434879 0) 1
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COMMENT #74=(CLabel (CWidget 1001 (0 0) 1 2 0 0 #34# 0 100)
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COMMENT (LOGFONT 41 15 0 0 400 0 0 0 0 3 2 1 34 "Verdana")
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COMMENT 2.76923 1.02564 Nil)
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COMMENT (LOGPEN 13304312 29505464 1) 29491392
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COMMENT #76=(CGroupWidget (CWidget 10 (6 0) 1 2 0 0 Nil 13304240 100)
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COMMENT #77=(CGroupWidget (CWidget 11 (8 0) 1 2 0 0 Nil 13304240 100)
COMMENT (CObjectList
COMMENT #78=(CGroupWidget
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COMMENT (LOGPEN 0 6 10053171) 8 1 6.21659 1.9 0.082322 1)
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COMMENT 2.53336 0.555556 0 "{\\i Sac}I (2202)" "@N (@S)"
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COMMENT 2.53336 0.555556 0 "{\\i Sac}I (5476)" "@N (@S)"
COMMENT 5 0 0 8.66431 1.97573 2.94872 0.692308 #84#))
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COMMENT (CObjectList) (CObjectList))) (CObjectList)))
COMMENT (CSeqView 10 10 (CObjectList) (CObList) 1 (CObList)) (CObList) 20703216
COMMENT (CStringList) 85 23121744 (CObList)))
BASE COUNT 1651 a 2037 c 2085 g 1542 t
ORIGIN
1 ctctctctct ctctcgctcg cttttccctc gcgccgccca tgatgaactg cataccgtgt
61 gagagcccgg gaggcgtgcg tgacacgaca agagcgtggg acaagcaacc tcgggacgtg
121 cgaagcgtgt gctgtctact tgcggtaaac gttttttggt tgtatctccc cttcgtcttt
181 gcatgccaag gcacgctctc tgtggtcagg caccacgagc gttccacagt gcaaccgtcc
241 aaaatcggat cggtagaggc acatcctttg cagcgagact tctacacaca aggcgtaatg
301 gttctccatg acattgaagc gtaaattgct ctccgagaaa gcactgctgc tcccccgaca
361 catctgctcg tgtcagagtt ggctccagat tcctatcttc atcgtctttg cacccctgca
421 gtgctgggat gcttagcaga gcacattggg gttgtcggtt gcgcatgcgc ttctgtaaat
481 agacgtcttt tattacgatt gccagcaatg gtgattgccg gccttctgcg gcgaacaccg
541 cgcgcagcag gtacgcagac ccgcaggaat gcacttagtt ttgctgcagc gactagcagt
601 agcagcagcc tcgttagccc ctctggcgag aaagctcccg tgtactacaa cttttcgacg
661 ccgttgagtg tgctccgtgg tgcaacggat ggcgaaagcg tgtctcaccg acgccaacgc
721 cgagaagtac cggctcgaga aggaggactt ctacttgtgg caccgcgctc gccgaactcg
781 agcgaccacc ttcagcaact gaacattttt cgacgcgact tctttgactt tggcaacgct
841 gcaaagctca cccagaatat catggtaagc gtggacacaa gcacccgccg cttcctcgaa
901 atgttctgtg attttgatgc caaacgctgc aagttgtgca atgagtcgtt cactcagtgg
961 cacattcaca ccaatggtat tccacacggg gggagggagg ggatgctgct ggagcttgtc
1021 cgcccctatt gtggaacccc agatgaactg atagagctgt ggtggaagcg gctgaacgcg
1081 tgtgctgcct ttcacaggat tcccgcactg agccacgaca acccgaacga acgcaagcga
1141 cgtctactgt atctgttgaa ggtgctcaag gaccgcggca tcctcgtgga gacgttcaat
1201 gtaagtgaca accagtccgt caactcagcg cggtcgtggg agtttgagcg acttgagttc
1261 gtgggtgata atgttgtcaa gtacgtgctg aacaacgtca ttacctgcac gtttccaccc
1321 catgagggcg gtacaaaggg aaagctcacg tgtttccaat tcgtgatgga cggcaacgat
1381 ggcttggcac ggggctacga ccatctagat cttcagcagc tcgcttcaag cgctagggta
1441 gtcagcaaat tcaagagtga catcgtcgag accctcttcg ccgagctgca gatgtatctg
1501 tggtgcacgc agcacgacgt cggcacctgc ccgcttgtgt ttccatttac gaaggatatc
1561 tacaccctac gggcactggt gcagcatgtg ctgtacgagc tggctattga gatttttctg
1621 taccacatcc gccacattaa cggtgtgctc caacgcgtga tgcgagagaa taacctgcag
1681 ttcgtaaaaa cagacgcttc gctaaagccc aagtctggca caaggacggg gagcattggt
1741 ttcattagcc gccgtggtga ctggaatgat agcgacgatg actacgactc cccgcaaaac
1801 tactctgtgc cagtgctgcc tgctccaacg tcaactctaa cgaaagtgcg ctcgccgcgc
1861 acacacctac aagacttcgg cgcagcgctc ttcttggcct ccacaaacta tgataacttc
1921 aagcgggtgg taccgattgg aggtctcttg cctcggcctt ttgcgaggaa agatttatct
1981 gtgatcccaa actatatgcc gcatcttcag agagacagcg caatgacgct gaagattagg
2041 agggccggga atgccggctg gtcaactctg cgtaccacca cagcagctcc ggccacgatg
2101 gaaggctttg tcgatgggct cgcgctacgt ccaaaacgaa caccgcgtgt cggaggtgaa
2161 ccagtaggct tgtcggtgcc gcgtctgaag gatgaggagc tcattcaaga actgatttaa
2221 acgcctcacc ggctctcgac ggcatgtgcg ccttttcttt gtttacggaa tctctccccc
2281 gcccatttgg ctcgcttaaa caagaacgcc acatacacgc agctctgcgg gccgcatggg
2341 agggagggag ggaacagatg caacacacaa gaagacgagc ttgaggtgct atggtaacga
2401 gtctcgaccc acacgcaaac gcacaggact gctcacagtg acgctgcaga tgcttgcaca
2461 gacgcgaagc tcagcggaaa acatcgtcag caaaaataaa acactggtgt gggaaggtgc
2521 tactgggtag gtgcaaaggt gagactgttc tttgggagaa cgaaccggca tgccacctac
2581 aacgtacgag gagacggcca caaatggaga gtcgatctct cagcagacgt ctttctgttt
2641 tttttgtctt cgttcttcac aggtcacgcc ttacctcctc actcccctcc ctcccttctt
2701 ttcctctact tccccgtctt ggtgcagcgt ctgtctgtgt gtgagtgaat gggttctgtg
2761 cagaggaaag gggtcaaggg caacaatgcc cccatgtcac agggccgtgc tactgtctag
2821 cgcgtaccct catgtcgact ggtgcaaaat atggctgatg gttcgttctt tctagtctcg
2881 tactcttctg tttgttccct cactcactct ctgcacaatt atcatgcgca ccatgacacc
2941 tgcagccgca tagaacttca tgcaggtgcg catctatcgc agaaaacacg gacgtgtcct
3001 cgccttggtt gctgcacgat tcctctgcgt gctttgctaa cgccgttaac agagaccgac
3061 tacgtctgcg tttgccatac gcctacaata taggctaacc ccctcccccc tccccacccc
3121 ccatacgaac acgcaggcag tgccgctacg caatcaatca gtgcatttcc tattagggag
3181 ttcgtgctgc cgttctcatg cgaaagcgga aagacggaca cctcgtcatc ggcaacgcga
3241 cgcaagggat cacctctctc acaccttctg gcgctttttt tttcgctcct cttcggaaag
3301 cgccgtaggt acttctccac atactttgtg gcgtcctcgc ttctctactt gacacaagca
3361 cacagctacc acctcgccag atttgggagg tcgtcgcttg cggtttgtgc actcctcacc
3421 aagccaattt ttttccccgc cgtcggtgga ggacaaaggt agtgaggagc ccgcaaaggc
3481 ggctgcattt gtaatgatta ccgctcggtc accttatcaa gtatacaagg cggcggacgc
3541 taatggtacc gtcgccactt tcaattcgat gccgtcggag gaggtgttgc catacaagat
3601 cgtgtcgtct gaggagacct tggtggcgtc actctctgta gtggaaggga acgaggaaca
3661 acgaggcaag tatgctgtgt cagccctgca cgccgccaga gtgtacattt ctgacctcat
3721 cagctacatt cctctctctg cacgctcgca gacggcaaag aaagttcaaa tcaacatgga
3781 tgcggtcgtg cgcacggtca tgctattcgc aaccaacgcg gaattgctag agagtgtcaa
3841 gaacatggtg ctcaccaacg cctcggggga gcaggtttta ctgaaggatc tctcagacct
3901 ggaaggcgcg ctgaatgcga tggaaaaggt gtaccggcag aaggcgaagg gggccgggga
3961 gaaagtggac atgctgcgca aggttgcgcc ggagccagtg atcgtcccat ccagcccagc
4021 aaagttacag agtgcgacgt cattgacggc agggcatgac ggggacgatg ctgcgtcaaa
4081 ctcgaccggc tgtgctcggc agcgccgtcg gcgctcacag tcgacggacg ggcctgccgc
4141 caatggggac ctgcacggtg acgccgccgc gttcaaggcg gccaaagtgg agggcgccat
4201 agacgacgct cccctcgcag ctgtgtatgc agcaaagaca tgtggtggtc acaagagcgt
4261 gcgcgccggc ggacgtggtg gcctggtgtg gggccgcctc cgtggtctag caaataacga
4321 aaagaaggtg gtcgcgatgc ttcacgccat gattcaggta cttgggcacg tattcgcgac
4381 caagttcaac gacctcgtgc ctattttcga tatgctcgag gaacgtgtgc aggcggtaca
4441 gatcattatc gatgctgacc gcgctcagta caaaacgaag gaggacaaac gattacccga
4501 accgtttcac gaagtcaccc tggatgctgt gcagcacgct ttggcgcatt cgagcgacac
4561 cttccgtaat gacgaggagt gtcgctacga gcttgatgag gacttgttgc accccatcgc
4621 ccacgcctgc ctcagtgtca tcaatcacat cgagggcttc tcgaccgaac cattcaaggg
4681 cccgacgcca ggggatttgt tgaagaaaca gcagctgcgc gacgcagccc gcaccaagcg
4741 cgaggaagcg aagcgccgaa tgcaggaaaa ggcggaggcc aaggcggaac tagagcgcaa
4801 gaaagaggag gagcgacagc tgatgcggcg gcgtctgggc gatggcggtg acgagtatga
4861 gaaggacctt gaagaggaca ccaatattgt cactccgtcg atcttaggat acgtttgcta
4921 cgccgcagag ctgccgctcg gcacccctga actcttcgaa aaggcgctgt atgtgtggag
4981 catgatctct tcggtgccac gagcgttgag tctgtcgcag atgcactttg gcactttcct
5041 caagggcatc aactgcgtgg accaggacgc gaatggactg atggaggagg tgacgcgatg
5101 tctgctcaac gtttccatgg aaagcgtgcg tgtgcgctct cccgagatgc cccgtatcgt
5161 gacccgtgga aagaactggt tcgatgcgct tgttgagttt gtgggagtgg caagtgggaa
5221 caagaagaag cgacagcagc agcagcgccg cgtatccagc acggaagacg aggaggagag
5281 cgacagcgac agcgacactg cctcttcgag gtcgtcgtcc tcctcctcgt cttccttttc
5341 gtcgaaagaa acgggtcccc acacctccgc ggaggaggac tcaaaaccag aggaaaaggc
5401 ggcagctgcc gtggtggaca aaggcgaagg agccgcggaa gaggaggtgg atacagatcc
5461 cttctcgctg gagctcaagg cgacaatgga gaaggtagcg gggttgcgtt cgttggcgtc
5521 atggggcaac atcgatgtcg ttgatcgtct gaatctgctt cagttctgcg tactggaggc
5581 gctcgccagc gacgacgtgc gcaacgaagc agatcgtgtg caaaaagacc gcgaagatga
5641 ggcgctgaac gccgacaaga aactgaggga gattcgggag gaggcggaga aggagttaaa
5701 gtcgttattg cgcacactgc cctctgtaac atccgtcgcg gcccgcaaaa agaaaacaca
5761 gaacagcaag caaaaggctg aagcagtgaa gacagaggac aagtctgaaa tcaacgccga
5821 ggatgaccag aaacgtggcg acgacgtgga ggacgacgag gggcaaaagg aaaaggaagt
5881 gagggaaaag gcggagaaga cttttgaggc cgaacgcgaa gcgatcctca cacaaatgga
5941 tcgcaagcga gagggggtgt acgcgcgtct gttcagcgtg caggatggca aggacgacgg
6001 cgctattgtg gagccacttg gcatggaccg ctatcggcgc ctctattggc gttttccaat
6061 ggagcgagta gtctatgtgc aaagtgttcc acacctcacc gctgccacat tccctgttcc
6121 cgaagagcca ccggagctga agcagcgccg tgcctcgtcg cgctcgctct tgctggatga
6181 cgaggaggag tacgcaacac tgggtagccg gcggcgcggt ggcagagttg caactccaac
6241 gactgaggtg ccttgcacca aggaagccaa gggtgtgggt cagatgagtt ggggtgttat
6301 tccacacgac taccttcgca cgttcgtgca gactctggac cgtcgcggag agcgggaggc
6361 gccgctgcga cacgcactgg agacactgga gccgtacctc agtgcgctgg aagagccacg
6421 agaggggcgt gagacgcggg cccgcgccca tatgtttggg tacgtgaacc ttttaaaggc
6481 cgacttcacg tactaaccca ccaaagcgcc ttcttgagta tctaccgcat ggctttctct
6541 ctctctctct ctgtgtcgtg ctcgcaaaga aaagaaaaag tagctctgat gttttgctgt
6601 tgtatcctga aggaaataga atgaatgctc ccgccctttc ggacgtgtgc tgacccacat
6661 atttacgcca cacaccagcc tttgagttca tcgtagcgta ctgtggattt gtacagcgcg
6721 cacaaagcaa gtgaacgctg aaacgaatgt tgaggcagtg ctagcagaac tagcgaagtt
6781 ctcctttcag ctgtgccgtg gtcctctgtc gcacgacgtt ctgcgcgttc cgcagcgaca
6841 atatcgtctc tgcccgttgc cacaacaggc aagcgattct gtgcactgac cccttgagtg
6901 cgcctctttt tttacgcaat gccatcgaaa cttttcctgc ctctctcttt cctggcatcc
6961 aatggtctcc aattgtcact cgaacgaact gttcacttcc cacagcagcc atgcgtacga
7021 tcgagtgcga gttctcccac ttcgcggtgc accccggcca cggccgccgg tacgtgccgt
7081 tcgcgttcct gtcgacgaag ccggtgctga ccttctcgcg gccgaagtgc ttcgcgctgt
7141 acatgcgcaa gaagaacccg cgcttcattc cgtggacgcg cacgtaccgc cgcatccacc
7201 gcaagacgac gacggaccgc gtgaaccgcc gccgcgccgc gcgtgcggtg agagtgcagc
7261 gcgcgatcgt tggtgcggac ctgtcctaca tccaggaggt gcgcgcgtcg cgcaa
//
LOCUS LtRET1 3360 bp DNA 16-DEC-2001
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|250269611|
COMMENT VNTDBDATE|250269611|
COMMENT LSOWNER|
COMMENT VNTNAME|LtRET1|
COMMENT VNTAUTHORNAME|Larry|
BASE COUNT 664 a 1003 c 1037 g 656 t
ORIGIN
1 atgagcaagt actctctgct gttcaaccaa ggcaccaaag atggtaccaa cgcttccagc
61 ggcagtgagg ccaacagtgc caacattact agctcatcgg cgccagctag cagcacgaat
121 actagcagcc cgacttcctc agaatctgcc gtagtatctc cgcccgcttc gacttcaccg
181 cggcgtcgct tgatccaccg tcgtcatggc agtgctggcg cagcagaggt ggcgccgtta
241 tcgttgccta aacggcctca gcagccgaat gaggagaagc atgagaattt catcagcgac
301 tcggtgcatc attgtagcaa ccgcggcgct tcagggagcg agttgaaggc attgaccacg
361 tctggtagtg agactgtcat gtctgcctcg ccagacatcg cttttgaagc tccatcacct
421 cccacagcgt cggcttcgcc gccattggag agcacctctg ctgttgaatc ggatggtgac
481 gtggtgatag atgacatgat gaggtaccag gaaggcgaca gcggtggaag caggagcgcc
541 actagtgcgg cagccgcagg gagagctgtg agcaccaatg acgccgcagc tctcatcaac
601 ggtgaccctg gccctttgtc gtccgctgtc tcctcgtcgt cgtctgggtc tccgcacaca
661 cctccgcgtc tgtttacctg tgacatgtgc ttgcaatatg tctccacctc gtacgaagcc
721 ctcgagcagc acgcactcga tcagcacggc gacgcgttgg ctgactacac ccgtctgcgc
781 agtgtcgcag aaaaactagt gccggtgtgg gatgaagttc tgaaacggaa ggcgtctgtt
841 gtccagcaat ggggtaagag aatctttgct gttgccgtgc agcgcgatgc aggggcggag
901 aagatggccg aagcgcacag ggcgagggca cagttggagt tggtcgtgca gcgctggcac
961 ccgcgcgcta aggtatttat ctttggcagc tccgtcgcat ttggcgtgtg ggacgggatc
1021 tctgacatcg acttcactgt cgtcgacgtt gatgagttgg aggcggggac gtggcctccc
1081 tcagagaaga acgcggtgcg cagcatcaca gagctactgc gccgcgccgg gttctccttc
1141 atcaacctgg agccgatcag tcacgcacga gtgccgatca ttaagcatca cgcctcgctt
1201 cccatccggc tgaccgatga acaacggcac cgtctgtatg aagaggcacg gcagtccgca
1261 gcggcggtag atctggtggc tgcagagtca ctcgcgtcgt cgtcaccgtc gagtgcgcaa
1321 gaaacgacag atgagaaagg cctcacacag ctcgaggcgg agctcatcat tgcgcgcagc
1381 gtccgctact cgctcaactt gccggccgga ccacctgaca gcgctatcct cgaggcgagc
1441 attcggctgg ctgtggggtc ggcggctgtt cagcaggtgt ggtggaaccg tacacgcgat
1501 atgtgctgca tgacattcga cacgacaacg aacgccgtca aggcctcaac gtgtccgttg
1561 cactttatgt cggctggcat gcgagcacga gtgcagccgc tgcatgagga gtgccggccc
1621 gagctttacg gtatggattt tgacctcagc tttcgcgcgt ttggtatccg caactcgcat
1681 ctgctgcggc gttacctgct cagccacccc tgcgcgcggc cgggtgcttt ggtgctgaag
1741 gactggtcaa agacgagcgg cgtcaacaac tctgtcaacg gttatctgac aagctatgcc
1801 atcaacatta tgtggatcta ctacctggtt catcgtggcg tcattcgata cgtttgcccg
1861 gcgcgcgata tcccagcgtc gctgcggtgc aacgtcgacg cggatcccca gtacgcggct
1921 atggttgacc cgacgtggac gcctgaggag cgcgccgcca tggaggcaca ggcgggtgag
1981 ctgctgcttg gcttcttcta ctattacgcg ttcgagttcg actgggtcaa ccacgtcgtc
2041 tcgctgaacc gtcccgggat cacgacgaag gcatcactgg gctgggacgt ggaagacgta
2101 gcacagacag gtagccctgc gccacatttt ggcgtcgctg gctcgcagca tcagtacaat
2161 cttgccggtg cggagggcca gcagggcgat ttacacagcg ggacctctct gtctgctcct
2221 cagacaaggc cattgacagg gtacgacggc atgatggcca gcagtgcgag cgcggcagcc
2281 cgccgcagcc gagcgacgac acgctactcc ttctgtattg aagatccgta tgaggaaaac
2341 ctcaaccttg gacgccatat gggcgtcacc aagacgctgc gcgttcagac agagctctac
2401 cgcggcctac tgtcgctgct caaagatgat ccgcagcact gttgtgtgtt cgcgggtagc
2461 acgaactcgt ccggcagcac cgacagcaac ggtgctatgg ctagtggtgc tgcagagccc
2521 gcgatggtgg cggccaggac cccttctgag cccacagaac tgccggtgcg cgtgctctac
2581 aagcttatgg cgatctcgac tcgagagctt gcgatcgcgc gtagacgata ttctgccacg
2641 gttactgccg gcaccgagtt ccccggcgct ttgctcagtg acctcgaggc tgcctttctg
2701 gcgcaggcgc cgacggagtg gaagctggcg agacaggtgt ggaataagca tcagcttctg
2761 caccgactcg gactgaagct gcacgcgaga gagtacgtgc tgcctcggcg ggaggtcggc
2821 gtgcggcgct tggcagccaa ggcaccgccg ggagtagtgc cagccagcgc accggagcca
2881 accttcaccg cggaggaggt cgccgctgct gctgcggaga gtgggcaagc gccattttca
2941 gcggagcacg ctccgacctc cagcgaagag gtaacgcaga tgaaccgggc gtttctcggc
3001 gcctttcccg cacgccgcct accagaggac ctgatgctgg cgatgacaaa ggggtattct
3061 tgtctgaccc ccagctgggt cgcatggtcg aagccgtggg cggcgttgtc cgcgtggtgg
3121 actgaccgcc tacacagccc aagcacgaca acgcagggcg aggacccact tgcatctggc
3181 acatgtgaac agggaggcgt cagcccttct ctgcccactg gtgcgccgca ccacatttct
3241 gcggtaccag agaaatcagc aggtgcgatg caccagacgc gaacgcaact gcggcgtcac
3301 gtggtggccg aaatagcaag tacgccggct gctcgtcgag tgttgcgcct actctttcgc
//
LOCUS REH2\(T\brucei\R 1881 bp DNA linear INV 31-JAN-2009
DEFINITION Trypanosoma brucei TREU927 RNA helicase, putative (Tb927.4.1990) partial mRNA.
ACCESSION XM_839256
VERSION XM_839256.1 GI:72387849
SOURCE Trypanosoma brucei TREU927.
ORGANISM Trypanosoma brucei TREU927
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Trypanosoma.
REFERENCE 1 (bases 1 to 1881)
AUTHORS Berriman,M., Ghedin,E., Hertz-Fowler,C., Blandin,G., Renauld,H.,
Bartholomeu,D.C., Lennard,N.J., Caler,E., Hamlin,N.E., Haas,B.,
Bohme,U., Hannick,L., Aslett,M.A., Shallom,J., Marcello,L., Hou,L.,
Wickstead,B., Alsmark,U.C.M., Arrowsmith,C., Atkin,R.J.,
Barron,A.J., Bringaud,F., Brooks,K., Carrington,M., Cherevach,I.,
Chillingworth,T.-J., Churcher,C., Clark,L.N., Corton,C.H.,
Cronin,A., Davies,R.M., Doggett,J., Djikeng,A., Feldblyum,T.,
Field,M.C., Fraser,A., Goodhead,I., Hance,Z., Harper,D.,
Harris,B.R., Hauser,H., Hostetler,J., Ivens,A., Jagels,K.,
Johnson,D., Johnson,J., Jones,K., Kerhornou,A.X., Koo,H., Larke,N.,
Landfear,S., Larkin,C., Leech,V., Line,A., Lord,A., MacLeod,A.,
Mooney,P.J., Moule,S., Martin,D.M.A., Morgan,G.W., Mungall,K.,
Norbertczak,H., Ormond,D., Pai,G., Peacock,C.S., Peterson,J.,
Quail,M.A., Rabbinowitsch,E., Rajandream,M.-A., Reitter,C.,
Salzberg,S.L., Sanders,M., Schobel,S., Sharp,S., Simmonds,M.,
Simpson,A.J., Tallon,L., Turner,C.M.R., Tait,A., Tivey,A.R., Van
Aken,S., Walker,D., Wanless,D., Wang,S., White,B., White,O.,
Whitehead,S., Woodward,J., Wortman,J., Adams,M.D., Embley,T.M.,
Gull,K., Ullu,E., Barry,J.D., Fairlamb,A.H., Opperdoes,F.,
Barrell,B.G., Donelson,J.E., Hall,N., Fraser,C.M., Melville,S.E.
and El-Sayed,N.M.
TITLE The Genome of the African Trypanosome Trypanosoma brucei
JOURNAL Science 309 (5733), 416-422 (2005)
REFERENCE 2 (bases 1 to 1881)
AUTHORS El-Sayed,N.M.A., Myler,P.J., Blandin,G., Berriman,M., Crabtree,J.,
Aggarwal,G., Caler,E., Renauld,H., Worthey,E.A., Hertz-Fowler,C.,
Ghedin,E., Peacock,C., Bartholomeu,D.C., Haas,B.J., Tran,A.-N.,
Wortman,J.R., Alsmark,U.C.M., Angiuoli,S., Anupama,A., Badger,J.,
Bringaud,F., Cadag,E., Carlton,J.M., Cerqueira,G.C., Creasy,T.,
Delcher,A.L., Djikeng,A., Embley,T.M., Hauser,C., Ivens,A.C.,
Kummerfeld,S.K., Pereira-Leal,J.B., Nilsson,D., Peterson,J.,
Salzberg,S.L., Shallom,J., Silva,J.C., Sundaram,J.,
Westenberger,S., White,O., Melville,S.E., Donelson,J.E.,
Andersson,B., Stuart,K.D. and Hall,N.
TITLE Comparative genomics of trypanosomatid parasitic protozoa
JOURNAL Science 309 (5733), 404-409 (2005)
REFERENCE 3 (bases 1 to 1881)
AUTHORS Ghedin,E., Blandin,G., Bartholomeu,D., Caler,E., Haas,B.,
Hannick,L., Shallom,J., Hou,L., Djikeng,A., Feldblyum,T.,
Hostetler,J., Johnson,J., Jones,K., Koo,H.L., Larkin,C., Pai,G.,
Peterson,J., Khalak,H.G., Salzberg,S., Simpson,A.J., Tallon,L., Van
Aken,S., Wanless,D., White,O., Wortman,J., Fraser,C.M. and
El-Sayed,N.M.A.
TITLE Sequencing, closure, and annotation of Trypanosoma brucei
chromosomes 2 through 8
JOURNAL Unpublished
REFERENCE 4 (bases 1 to 1881)
AUTHORS Haas,B., Blandin,G. and El-Sayed,N.
TITLE Direct Submission
JOURNAL Submitted (12-JUL-2005) The Institute for Genomic Research, 9712
Medical Center Dr, Rockville, MD 20850, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. This record is derived from an annotated genomic
sequence (NC_007277).
COMPLETENESS: incomplete on both ends.
COMMENT This file is created by Vector NTI
http://www.invitrogen.com/
COMMENT ORIGDB|GenBank
COMMENT VNTDATE|508700839|
COMMENT VNTDBDATE|508700839|
COMMENT LSOWNER|
COMMENT VNTNAME|REH2 (T brucei RNA helicase mito, XM_839256)|
COMMENT VNTAUTHORNAME|Larry|
COMMENT VNTOAUTHORNAME|UNKNOWN|
FEATURES Location/Qualifiers
source 1..1881
/organism="Trypanosoma brucei TREU927"
/mol_type="mRNA"
/isolate="927/4 GUTat10.1"
/db_xref="taxon:185431"
/chromosome="4"
/vntifkey="98"
/note="single VAT derivative of TREU (Trypanosomiasis Research Edinburgh University) 927/4 (GPAL/KE/70/EATRO 1534)"
gene <1..>1881
/locus_tag="Tb927.4.1990"
/gene_synonym="Tb04.29M18.630"
/db_xref="GeneID:3656723"
/vntifkey="60"
/note="RNA helicase, putative"
CDS 1..1881
/locus_tag="Tb927.4.1990"
/gene_synonym="Tb04.29M18.630"
/codon_start=1
/product="RNA helicase"
/protein_id="XP_844349.1"
/db_xref="GI:72387850"
/db_xref="GeneID:3656723"
/vntifkey="4"
/label=CDS_1
/note="similar to ATP-dependent RNA helicase SUV3, mitochondrial precursor. (Swiss-Prot:P32580) [Saccharomyces cerevisiae]"
BASE COUNT 429 a 431 c 560 g 461 t
ORIGIN
1 atgcgccgtt tgtcagttac tgcacctgtt ctctttctgt gttttaaatc gtactgcaca
61 aaccatggcg aggggaaact gatccaaaca gtatgtgact atatctaccg cagcagcagc
121 gcccgggagc aactgcggca gctcattcat gatatgtcag tggagaacgc tttgcggcat
181 ctcggtgaat tctcagagga gggctgttca ggtgccacac caccatggtt gggtgaactt
241 gttcaggccc ccggtgatct tgaacggatt aacattgttc tcagggagtt tggggtttgg
301 tacatcgcgc ggaaggcgcc actgagggtg acgatgggtg aaccgtggga ctggtacccg
361 aaggcacgct tcatgcgccg gcgtttcatc tttcatcatg ggccaacaaa tagtgggaag
421 actcacgcgg cgttggagga attggtaaag gcgaagagcg gtgtttattg tgcgccgatc
481 aaagcactgg cggcgcaagt gtggaagcgt attaacgcga gcgtgccttg cgacttgctt
541 atcggggacg agcggcaatt tggtggtgga gcggagcacg tctcatgcac ggtggaaatg
601 actcctattg actatcaaat tgacgttggg gtaattgacg aggtgcagat gattggtgat
661 ggggacaggg gttgggcatg gacgcgtgcc atattggggt tgccggcacg tgagattcac
721 ctctgcggag aagaacgggc aatacctctt atccgcagtt tgttgtataa aacgcgtgag
781 ctcaagggac ttcgtttagt gccacatcag cggctggctc ccctcaggac atcagccgcg
841 ttagggggag atctgcggca agtcgaaaac ggtgattgcc ttgtgtgctt ctcgcgcaag
901 atgatttttg ctatgaaatc acagctggaa aagctgcctg gcgttgcggc tcactatata
961 tatggctcta tgccctttgc cgtgcgtgag gcccaggctg acgcattcaa ccgtggggtc
1021 cgggaagcgg tagagggcaa ggactcgaaa aaacatgttt tagtgtccac ggatgctatt
1081 gcctatggct tgaacatgag cattgagcgc attattttcg tatcaatgaa aaaattcgac
1141 ggaaaacaga tgacaagctt accgcaggca accacggtgc aggtagccgg tcgcgccggc
1201 cggtttggag tactcagggc caacactttc ggccgctgta ccacacttca cgcggatgac
1261 tttccgacac ttgaaagcgc tattaacgct cgactttccc ctctgcagag ggctggatta
1321 ctgcccacag ccgacatatt ggagctgtat gtcacaatga attccgacaa gaagagattg
1381 aagacctcag gtgtggtgcc gcaagatgta ttctacggtc atgtaaagga cttctccagt
1441 cagtgtaaga cctccgattt gttttttccg tgtgacctgt cgcggtcgct gctgcaggtt
1501 gcaagggagt tggatgccgt gccaggtctg tctcttaccg ataggatcct tttctgctac
1561 gtaccggtga atacacgcaa caaggacaca ttcgacctgc tgcgttgttt tgcgcgtgat
1621 catgctaccg gggggcccgt tcgcctccgt attgatgagg agtttgaaca actcgtgggg
1681 caatgtgcgc acttaaaaac tcataaggac agtgaacgag cacatcgtat attgtcgcgg
1741 atggaagact tataccgtca tgcagaaatg tattgctggc tttcgtggcg gttcggtaat
1801 acattcatct acctagaggc aggatcggca ctgaaggaac gaatcgtggc gaagatggat
1861 gagctgttgc ggaggttgtg a
//
LOCUS Tb\MP103\d 2805 bp DNA 14-DEC-2004
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|357919134|
COMMENT VNTDBDATE|357919134|
COMMENT LSOWNER|
COMMENT VNTNAME|Tb MP103 dna|
COMMENT VNTAUTHORNAME|Larry|
BASE COUNT 670 a 693 c 792 g 650 t
ORIGIN
1 atgtaccgtc tttatcgtcg gactgtaggc tatcagacgc tacaccagag gttgtcagcg
61 tgccacgtta tgtgtcgcca cgtctctacg gataacagcg atggcacaac accgcccaaa
121 ccgcgacgca gcggcatcag gcgcgttgtc ccttctgatg aggaaatggc ggaactgcac
181 gatctcgagc aggaggtggc atccacaact tcctctcggt cgaagcagtc ggcgctctct
241 ggtgtcatgg tggaacccat gcgcttctcc acttccggtg actcgggaat ggaaggcgat
301 ggggacgatt taggggagtt agaagccgaa ggggacgaag agggtgtagg aacaaattcg
361 ttggctgaag cggaaaacgt atacaaaaga cacaatgatg gaggtgcgct ggagaagcgg
421 ggcttggcga tcccaccatc agggaaaccg acagacccgc tgctggccaa cagggacgat
481 gaaggagaag ggggcgcggt gcctttgtca caggcggagg aaatgacggt gagtcgcagc
541 acacttgaac gacaagcttg tgtgcgctcg ctttccctag aggagttggt ggaggctgtg
601 actctttacc tgcgtgcgac gaagaaccca cggctggtgt ccgccgatga ggaacatatc
661 ttttttcctg ttctcatgga gcgtctgaat gaattccacg tcagccagtt gctggatgtt
721 gtggaatgcc actgggcccg ttccacactt gtgcggtacg gtacaacctt caaggatatg
781 gttcgtgaca gaattgcact tattgcaacc gcggcggcaa agagcgcctc caagcggccg
841 gcggctgcgg gggagagtgg taatgataac agggatggtg gtgccgtgga ggaggaagct
901 gatgattatg atgaacaagg aggtgcagtg tacgtgcacg aggcagagga gaaaacttca
961 gaccttatca tccttcgtgc ggccgaggaa atgtcacccg agacagtgct gcggtgcatc
1021 attgttatgg gcatgagtgc tggtcgtaga aagcgggacc tgcaattctt tcaggcgatg
1081 ggtatgtttt tagttcacca cattaatcac tacaaagatc cacacgaatt ggtgcgtgtg
1141 ctcacggctt ttgctcgcgc taagatcgtt ccacctaaac gtttcctggc gctcttaggt
1201 cggcgttttg ctgtgctcaa caaacggaaa aagttaggct cattgcctag ttaccgagcg
1261 tccgttaacc tttacaaaat gggccacgat cagatgaaca cttttcggtt tcttgcggac
1321 tgcattttgg agacaattga ttccaacatt aaagcggaga agaaacggct gcgcttggcc
1381 caacttcaag gcagctctaa cattaccgcc gctacgacca acgaaaacgg tgcgactaat
1441 gagagcggat gcggtggctc cacaagtagt tctaacccaa ctgtaactaa tactactggc
1501 gcgggggatt taaaggcaac acacacatct gaaggagctt ccgacgtcgc attcatcggg
1561 gatttggacc cgcatctgct acagaacctg agagcacggg agcggttcaa gaggctaacg
1621 gaactaaaac cgtcaatgtt taccaagctt ctccttgttc ttgcacgctt tggcgcaccg
1681 catcaacagt acttacgacc cacaactgtg ccgctcattc ttcccacatt gcgggccttc
1741 ccaccaccga gttttacacg tttacttcgc gccatgtctc tcttcaggac gacggatttg
1801 gacctcatcg aacctgtcat cgacttcatg gccgatagcc ttggtccaac aaatgttgta
1861 cccgcagatg tgctgcaaat ggtccgcctg gtggcgccgc ctgacgtacc ggtaccccgc
1921 aaccttgtaa agctcatatc gttatgtgag gcagtgtact ccagctcggc ctcgttcagc
1981 cactctgatg ggaaaagtag cgatagcgct gatgccgctg cgtgtgcaat gaccacgtta
2041 tccccaatac gacctgggga tatgtgtgcc gttgcagttg ttttattaaa gattcaaatg
2101 aaggacgatg tgccacttga ggcgttggac ccactcaccc gcttgatgga attctttgca
2161 gagcgaatgt accttctaat gaagttacat atcgtttcat tgacgcacgt tgacgtcttc
2221 acggatcttt gccgacagca acaacatccg gacgtgtcgg ggcatattga acggctttgt
2281 gctgaacggc gtcgtgtaaa tgatgcagaa ggtgatgacg aatattacag ccagttggac
2341 attgacgtgc gcgaaaccct tcaccgcatc cttatcgtaa acgactataa cacctacggt
2401 cagtaccgcc ccacacctgg cgttctgcaa gtggacttca agcaggcact aacagaagtt
2461 agtgctttcg atgtgcttga ggcggcagac cttttcgctc aagctttctc caatgctcta
2521 aagccagctg tggaacggca tctcagcaga agtattatcg ctaagctgga cggtggtggg
2581 gaggaggtca ttacggaggg gaacagcatt gtccttcggc ctccgcgcga attactgctt
2641 acgcgtgaag atcttgggaa gtttgtgtgc ttgcttcaac ggacaccgct gaggcgggtg
2701 cgggcatcgc cagttgtgtg gcgatttgtt gaagaaaaag cgaagaaact ggggatggat
2761 gatgtactga gggtggtcga gaataaactg gccacagcag tttag
//
LOCUS Tb\MP121\d 2802 bp DNA 14-DEC-2004
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|357919063|
COMMENT VNTDBDATE|357919063|
COMMENT LSOWNER|
COMMENT VNTNAME|Tb MP121 dna|
COMMENT VNTAUTHORNAME|Larry|
BASE COUNT 669 a 693 c 791 g 649 t
ORIGIN
1 atgtaccgtc tttatcgtcg gactgtaggc tatcagacgc tacaccagag gttgtcagcg
61 tgccacgtta tgtgtcgcca cgtctctacg gataacagcg atggcacaac accgcccaaa
121 ccgcgacgca gcggcatcag gcgcgttgtc ccttctgatg aggaaatggc ggaactgcac
181 gatctcgagc aggaggtggc atccacaact tcctctcggt cgaagcagtc ggcgctctct
241 ggtgtcatgg tggaacccat gcgcttctcc acttccggtg actcgggaat ggaaggcgat
301 ggggacgatt taggggagtt agaagccgaa ggggacgaag agggtgtagg aacaaattcg
361 ttggctgaag cggaaaacgt atacaaaaga cacaatgatg gaggtgcgct ggagaagcgg
421 ggcttggcga tcccaccatc agggaaaccg acagacccgc tgctggccaa cagggacgat
481 gaaggagaag ggggcgcggt gcctttgtca caggcggagg aaatgacggt gagtcgcagc
541 acacttgaac gacaagcttg tgtgcgctcg ctttccctag aggagttggt ggaggctgtg
601 actctttacc tgcgtgcgac gaagaaccca cggctggtgt ccgccgatga ggaacatatc
661 ttttttcctg ttctcatgga gcgtctgaat gaattccacg tcagccagtt gctggatgtt
721 gtggaatgcc actgggcccg ttccacactt gtgcggtacg gtacaacctt caaggatatg
781 gttcgtgaca gaattgcact tattgcaacc gcggcggcaa agagcgcctc caagcggccg
841 gcggctgcgg gggagagtgg taatgataac agggatggtg gtgccgtgga ggaggaagct
901 gatgattatg atgaacaagg aggtgcagtg tacgtgcacg aggcagagga gaaaacttca
961 gaccttatca tccttcgtgc ggccgaggaa atgtcacccg agacagtgct gcggtgcatc
1021 attgttatgg gcatgagtgc tggtcgtaga aagcgggacc tgcaattctt tcaggcgatg
1081 ggtatgtttt tagttcacca cattaatcac tacaaagatc cacacgaatt ggtgcgtgtg
1141 ctcacggctt ttgctcgcgc taagatcgtt ccacctaaac gtttcctggc gctcttaggt
1201 cggcgttttg ctgtgctcaa caaacggaaa aagttaggct cattgcctag ttaccgagcg
1261 tccgttaacc tttacaaaat gggccacgat cagatgaaca cttttcggtt tcttgcggac
1321 tgcattttgg agacaattga ttccaacatt aaagcggaga agaaacggct gcgcttggcc
1381 caacttcaag gcagctctaa cattaccgcc gctacgacca acgaaaacgg tgcgactaat
1441 gagagcggat gcggtggctc cacaagtagt tctaacccaa ctgtaactaa tactactggc
1501 gcgggggatt taaaggcaac acacacatct gaaggagctt ccgacgtcgc attcatcggg
1561 gatttggacc cgcatctgct acagaacctg agagcacggg agcggttcaa gaggctaacg
1621 gaactaaaac cgtcaatgtt taccaagctt ctccttgttc ttgcacgctt tggcgcaccg
1681 catcaacagt acttacgacc cacaactgtg ccgctcattc ttcccacatt gcgggccttc
1741 ccaccaccga gttttacacg tttacttcgc gccatgtctc tcttcaggac gacggatttg
1801 gacctcatcg aacctgtcat cgacttcatg gccgatagcc ttggtccaac aaatgttgta
1861 cccgcagatg tgctgcaaat ggtccgcctg gtggcgccgc ctgacgtacc ggtaccccgc
1921 aaccttgtaa agctcatatc gttatgtgag gcagtgtact ccagctcggc ctcgttcagc
1981 cactctgatg ggaaaagtag cgatagcgct gatgccgctg cgtgtgcaat gaccacgtta
2041 tccccaatac gacctgggga tatgtgtgcc gttgcagttg ttttattaaa gattcaaatg
2101 aaggacgatg tgccacttga ggcgttggac ccactcaccc gcttgatgga attctttgca
2161 gagcgaatgt accttctaat gaagttacat atcgtttcat tgacgcacgt tgacgtcttc
2221 acggatcttt gccgacagca acaacatccg gacgtgtcgg ggcatattga acggctttgt
2281 gctgaacggc gtcgtgtaaa tgatgcagaa ggtgatgacg aatattacag ccagttggac
2341 attgacgtgc gcgaaaccct tcaccgcatc cttatcgtaa acgactataa cacctacggt
2401 cagtaccgcc ccacacctgg cgttctgcaa gtggacttca agcaggcact aacagaagtt
2461 agtgctttcg atgtgcttga ggcggcagac cttttcgctc aagctttctc caatgctcta
2521 aagccagctg tggaacggca tctcagcaga agtattatcg ctaagctgga cggtggtggg
2581 gaggaggtca ttacggaggg gaacagcatt gtccttcggc ctccgcgcga attactgctt
2641 acgcgtgaag atcttgggaa gtttgtgtgc ttgcttcaac ggacaccgct gaggcgggtg
2701 cgggcatcgc cagttgtgtg gcgatttgtt gaagaaaaag cgaagaaact ggggatggat
2761 gatgtactga gggtggtcga gaataaactg gccacagcag tt
//
LOCUS Tb\REL1(KS 1410 bp DNA 12-AUG-2002
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|242655174|
COMMENT VNTDBDATE|274806856|
COMMENT LSOWNER|
COMMENT VNTNAME|Tb REL1(KS)|
COMMENT VNTAUTHORNAME|Isolde|
BASE COUNT 351 a 309 c 388 g 362 t
ORIGIN
1 atgcaactcc aaaggttggg tgctccacta cttaaaaggc ttgtgggggg atgcatacgc
61 caatcaacgg cgccgattat gccatgtgtt gttgttagtg gctcgggtgt ttttttgact
121 cccgtgcgta cttatatgcc gctccccaat gatcaaagtg acttctcacc gtacatcgag
181 attgatttgc caagtgaaag ccgcatccaa tcactgcata agagcggact tgcggcacag
241 gagtgggttg catgtgaaaa agtgcatggg acaaactttg gtatctactt aattaaccag
301 ggagaccacg aggttgtgag gtttgcaaag cgtagtggca tcatggaccc aaatgagaat
361 ttctttggtt accacatcct tatcgacgag ttcacagcac aaattcgtat tctaaatgac
421 ttattgaaac aaaaatatgg actgagccgt gttgggcgtt tggtgctcaa tggagaactg
481 tttggtgcca agtataagca cccactcgtt ccaaagagtg agaagtggtg cacgctacca
541 aacgggaaga agttccctat cgccggtgtt caaatacaga gggaaccctt tccacaatat
601 agtccagagc tccatttctt tgcatttgac attaagtaca gtgtgagtgg cgcggaagag
661 gacttcgtgc tgcttggtta cgacgagttc gtcgagtttt cttccaaagt gcctaacctg
721 ttatacgcgc gggctcttgt tcgtgggacg ttggatgagt gtttagcgtt tgatgtggag
781 aatttcatga caccgctgcc cgcgttgctt ggcttaggta attaccccct tgaggggaat
841 ttggcagagg gtgtggtcat tcgtcacgta cgtcgcgggg atccggcggt agagaaacac
901 aacgtctcga ctataatcaa actccgctgc tccagtttca tggagttgaa gcaccccggt
961 aagcagaagg aactgaagga gacatttatc gacacggtac gctccggagc tctgcggcgg
1021 gtgcgaggga atgtgaccgt tatctcagac tccatgttgc ctcaggtgga ggcagcggcc
1081 aatgatctgt tactaaacaa tgtaagcgat ggcaggttga gcaatgtgct atcgaagatt
1141 ggtcgtgaac ctctgctgtc tggggaggta tcgcaggttg atgtggtgct tatgcttgct
1201 aaggacgcac tgaaagactt tctcaaggag gtagatagtt tggtgttgaa cacaaccctt
1261 gcttttcgca agttgctaat caccaatgtc tacttcgagt ctaagcggtt agtggagcaa
1321 aagtggaagg aactcatgca ggaagaagca gccgcgcagt cagaggctat tccaccactt
1381 tcaccggctg cccccacaaa gggcgaatga
//
LOCUS Tb\REL2 1251 bp DNA 12-AUG-2002
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|242655242|
COMMENT VNTDBDATE|274806877|
COMMENT LSOWNER|
COMMENT VNTNAME|Tb REL2|
COMMENT VNTAUTHORNAME|Isolde|
BASE COUNT 334 a 295 c 331 g 291 t
ORIGIN
1 atgttgcgtc gcctcggtgt acgtcacttc cggcgaacgc cgctcctttt tgtcggtggg
61 gacggcagca tttttgagcg ctacacagaa atcgacaact ccaacgagcg gcggattaat
121 gcgctgaagg gatgcggtat gtttgaggat gagtggattg ccactgagaa ggttcatgga
181 gcgaacttcg gtatctactc cattgaaggt gagaaaatga tcagatacgc aaagcgcagt
241 ggcattatgc ctccgaacga gcacttcttt ggctatcata tattgatccc cgagttgcag
301 cgatacgtaa cttctattcg tgagatgttg tgcgagaagc agaagaagaa gctacacgtt
361 gtgctcatta atggagagtt gtttggagga aaatatgacc accctagcgt tccaaagaca
421 cggaaaacgg tcatggtggc tggtaagccg cgaacaataa gcgccgtgca gaccgactct
481 tttccccaat atagcccaga tctccacttt tacgcattcg acataaagta caaggagaca
541 gagggtggag actacactac tctcgtctat gatgaagcca tagagctgtt tcagcgcgtt
601 cccgggctcc tgtacgcgag ggcggtcatt cgagggccaa tgtcaaaggt tgctgcattt
661 gatgtggaac gctttgtcac aaccatcccc cctcttgttg gtatgggcaa ctacccactg
721 acgggcaact gggctgaggg gcttgtcgtg aagcactcga ggctgggaat ggcgggattc
781 gaccccaaag gtccaacggt gttgaagttt aaatgcacag cgtttcagga gatatccaca
841 gaccgagcac aagggcctcg cgtagatgaa atgaggaacg tacgaagaga ctccatcaat
901 cgcgccggtg tgcaattgcc agacttagag agtattgtgc aagatccaat tcaactcgaa
961 gcttcgaaac tactccttaa tcatgtgtgc gagaatcgtc tcaaaaatgt gctatcaaag
1021 atcggcacgg agcccttcga gaaggaggaa atgacaccag accagttggc cacacttctt
1081 gccaaagatg ccctgaaaga ctttctaaaa gataccgaac cctccattgt aaatataccg
1141 gtactcatcc gcaaggatct gactaggtac gttatatttg agtccaggcg gctagtctgc
1201 tcacagtgga aggacattct gaagcgtcag tctcctgact ttagcgaatg a
//
LOCUS TbAP1 1383 bp DNA 20-JUN-2003
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|295279670|
COMMENT VNTDBDATE|305919202|
COMMENT LSOWNER|
COMMENT VNTNAME|TbAP1|
COMMENT VNTAUTHORNAME|verdi|
BASE COUNT 338 a 329 c 382 g 334 t
ORIGIN
1 atgcttcgct tattgcggcg ttccattgtt ggtagtacct tcaacattat ggtcaggagg
61 cagaatcagg gcagtgtatc gcagggagcg ctaaacatgc gggatcaaca ggcggcggcg
121 gcagagaatg tcacacctga gagagtatgg gcgttatgga atgaggggaa tcttttttca
181 ctttcccttg cgcaacttca aggatttctg tcgcgctgcg gtgtacggac ggatccggcc
241 gcaaagaagg cggcggtggt gcgacaagta gaggaatatc ttcactcaaa agacactact
301 gtgaagggtg gggggcaggg tgctgcttca cctcaacagc accaacagca tgggcaacag
361 ggtggatatg gtcgatggaa tcaggcttct gttatgcagc ctgaaacact tctcgatctt
421 tcccaagcag gtttttatga aggggcagcc aatatggtcc caaaggcgtt tcaactcctc
481 gttagcgaca cagcacccga tgtggttgtt tcacgagtaa acacaacggc attcccgggg
541 tttccttcga atacggagtg ctacacactc ggggcgtccg agaaggatgt cgccattcgt
601 tctagataca gtaaagttct ccagtggtgt tgtttgaaca tgagcaatct gcaaatggat
661 ggcgaacttt acgtggactt cggcaaactc cttttaaagc cgtcggtaat gcgaaagaat
721 cgtcggatcg tttcatccta cacgctccaa cagcggttac aggtgaacca tccgtacact
781 tgggtgccga cacttcctga gtcatgttta tcgaagatac aggagcagtt cctgcagccg
841 gaaggttttg ctcccatcgg aaaaggtgtg caactcacct acagcggaac tgttaaacgt
901 tcgaaagatc aactacacgt cgacctggac aataagggca aggttctcgc tgtcaatagt
961 gcatgggtga acttgcaaac ggcatggtgc acgcacgcta agggtcctga tgttcgatta
1021 ttgcttcgct cacgtccacc catccgccga caagatgtag aactcttcgc ctctacaccc
1081 atcataaagc ttgctgatga tgacgtagct gatgtacttc cgcctgaaca tggtcagttg
1141 gtatacctct cagaagatga aacgcggctg tttgaacgcg tctcggatcg tggtgtgacg
1201 ataactgtac gtgaggtaaa gcgtcagcct ctcattattc tcagagatga agaggaagac
1261 ccccgcgttg agtacagctt atcggctcat attcctgcca atgcggcgaa ggcgacagat
1321 gtgcgtgcgg taggactaac agcatttgag cttgcagggc gtctcgactg ggttggttgc
1381 tga
//
LOCUS TbAP2 1479 bp DNA 20-JUN-2003
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|295281189|
COMMENT VNTDBDATE|305919202|
COMMENT LSOWNER|
COMMENT VNTNAME|TbAP2|
COMMENT VNTAUTHORNAME|verdi|
BASE COUNT 378 a 347 c 411 g 343 t
ORIGIN
1 atgctgcgcg cgcgcctgaa aatattcagc gctttgaacg gtgcaacaag tgcctttagc
61 cgagcagtcg caccgctgca aattgcgact cgtcagcagt ctttttctgc agctgcaccg
121 gcagccagcg gtgacttctc acacattact cgtaacaccg tatggggctt atggaatgaa
181 ggcaatctct tttcactttc agtaccggaa cttgcttttt ttttacagga gcactgccgc
241 gtggcaaatg tggaccctcg tgcaaaaaag agtgcgttgg tgcggcaggt ggaagaaatt
301 ctctccgctg agcagcaggc gagcgcaacg gtaccgcagg aggacaaccc acacgccatt
361 gttgtgacgg actatgatcg tgccgaagat gcgctggaag aagcggatga atacggtgat
421 tggggtgcag aacccggttt tgaggaccgt cgtgagttgg actttatgga attaagccct
481 ggacgaatgg gcgaacgtta tgatccgctt tctcctcgag cctttcagct tctgcacagt
541 gagacagcta cagatgtggg tattgcgagt atcgacccga gcaaacttcc ggggcaaagt
601 aaggtgaaga atgccctggc agcaattcac gttgccccaa acgacgcaaa caaaatgcga
661 ttccgaatgg cctttgaatg gtgcctcatg aatatttgga atatgaatat gccgggtgag
721 cttaacatcg gagcgggtaa ggcactttac tatcgcagtg tggcaaagca aaatcgtaat
781 gtcatgccgc tgtggacagt gcaaaagcat ctctacgctc agcatccgta tgcctggttt
841 gccattgcga gcgaatccaa cgtagcggcc atggagtctc tggcggcagc tcttaacatg
901 agcatccaac aggaacgcac aacgagctat aaagtcacaa tccgtcgcat ggcagagttt
961 ttcgattgtg agctcaatgg tcaacttaag tgcacgatga tgaacaaacc gtgggatcgg
1021 ttcttcgttt cacactacat tcgcagtaag atgcccgatt tgcgttacgt cgtgcgtgcc
1081 aggcatccca tcaagaaacg tattgcggat gcttaccttg aagcggacat actacgtagc
1141 acacgggatt ctgtgcagtc ggtgttatcg ccggaattag gtgatgttgt gtactgttgt
1201 gagcgtgtgg ttcgcaagtg ggccaagaaa acggccactg gtgtaacact tcaacttgta
1261 gagacaaaac gaacgccgct catcatcaca aaggctgggg acgagggcga acgtttggag
1321 tatgagtgga ttgtgccgct accccaacag gctgaaagga ttgatatagc tgcacttacg
1381 gacgaactgt gggaatacgg taacaaactt gcggcagcgc tagaagaagg aatggaggaa
1441 cttatggttc acaccatgac tgccgtttcg gcatactag
//
LOCUS TbAP3 1185 bp DNA 20-JUN-2003
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|295282229|
COMMENT VNTDBDATE|305919202|
COMMENT LSOWNER|
COMMENT VNTNAME|TbAP3|
COMMENT VNTAUTHORNAME|verdi|
BASE COUNT 281 a 299 c 338 g 267 t
ORIGIN
1 atgcgcaagc aattattttt cacccttgca cgtccttgtg tggcggttgg gcgtcgcttc
61 atatctggtg acaacaaatc catcgatagc agcgccttca tcagcgatga tgacgcgctt
121 cggggggagc ttgcttcagc gcttgatacg gaggggcacg cactaccctt cgacgtacac
181 ctgcagcagc cccattcgtc gggtgacggg acggcaggtg acacgagcac cattcaactg
241 gagaaattat cgcatccacc agcacgcttt gatctcctca ccaattcatt tgtgtacaag
301 tggcagacga aggcagcact cgctcgtaag gtgtcaggac cgatgaggga atgggctgcc
361 gagctgaagt atcgcactgg ggtacatatt gaattggaac ccacataccc agagaggctt
421 tctgagaatg ctgtaaaagg cagtggaagc gacgaaggag atggcacgca gtggggggca
481 tacgagacgg cggatgatgt ggatattacg gtttaccttt ttggctcgga gcgtggcatt
541 ttcaactgtc acaagctcat ggaggcggct atacagcaag accctgtata cgtacggctg
601 ggcatcttta ggcggctggc gaactcaagt gaggtcgagt ggctaatgtt acgcaggata
661 aaccgtgaac tacggcctcc cgacattcct cctatttccc taaaactccc aggaaagtgg
721 acgttgctct acgagcgcta caaagaggcg gctatacgta cactgtggga agaaacgggc
781 attaccgtag atgcttcaaa tgtatacccc accggccatc tgtatcagac tgttccacaa
841 tactactggc gcgttcctgt acgctatttt gtagcggaag tcccctcgga cattcgcgtc
901 gaggggccac aggtggtccc gttgcagtac atgagaaact gggatgcacg gctccttcgg
961 cagtcgccgg accctattga tcgtgcatgg gcgcagttag cggatcctgc tactggatgt
1021 gcatggatga aggcttccat gattgaccaa ctgcagaaac cgctgcgcgg agacaactat
1081 atggcgatac ggtacacgcc tccaccctat tctaatttgc aagaagtggt gggtcttggc
1141 gatgggagta ttactccttc gacaggtaac ggggaagatg catcg
//
LOCUS TbMP18 495 bp DNA INV 2-APR-2003
DEFINITION Trypanosoma brucei RNA-editing complex protein MP18 precursor, gene, complete cds; nuclear gene for mitochondrial product.
ACCESSION AF382336
VERSION AF382336.1 GI:14495341
SOURCE Trypanosoma brucei.
ORGANISM Trypanosoma brucei
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Trypanosoma.
REFERENCE 1 (bases 1 to 495)
AUTHORS Panigrahi,A.K., Schnaufer,A., Carmean,N., Igo,R.P. Jr., Gygi,S.P.,
Ernst,N.L., Palazzo,S.S., Weston,D.S., Aebersold,R., Salavati,R.
and Stuart,K.D.
TITLE Four related proteins of the Trypanosoma brucei RNA editing complex
JOURNAL Mol. Cell. Biol. 21 (20), 6833-6840 (2001)
MEDLINE 21448979
REFERENCE 2 (bases 1 to 495)
AUTHORS Panigrahi,A.K., Weston,D.S. and Stuart,K.D.
TITLE Direct Submission
JOURNAL Submitted (21-MAY-2001) Seattle Biomedical Research Institute, 4
Nickerson St, Seattle, WA 98109, USA
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT ORIGDB|GenBank
COMMENT VNTDATE|298577163|
COMMENT VNTDBDATE|298806335|
COMMENT LSOWNER|
COMMENT VNTNAME|TbMP18|
COMMENT VNTAUTHORNAME|Larry|
FEATURES Location/Qualifiers
source 1..495
/organism="Trypanosoma brucei"
/strain="TREU427"
/db_xref="taxon:5691"
/vntifkey="98"
mRNA <1..>495
/product="RNA-editing complex protein MP18 precursor"
/vntifkey="54"
/label=mRNA_1
CDS 1..495
/codon_start=1
/product="RNA-editing complex protein MP18 precursor"
/protein_id="AAK64281.1"
/db_xref="GI:14495342"
/vntifkey="4"
/label=CDS_1
/note="similar to MP42, MP81 and MP63"
transit_peptide 1..54
/vntifkey="95"
/label=Transit_Pept_1
BASE COUNT 124 a 119 c 138 g 114 t
ORIGIN
1 atgctagctc ttacatcacg ccggttgctg ctgcagcaaa catttatgcg atgctgtaag
61 agtgtaaaca gtgtgaccct tgttggcgtc gttcatgata ttcagagcgg ctttgtatat
121 gaagatgccg tcacgcagtt tacactaaca acgacgagca ttgacacgac acatccaact
181 caggaggttg tcgtcgagaa ggaccaccac gcgatccgct gcttcggcga gctcttctca
241 gcggaagtga aacaaaaggt aaaggaggga aatgtagtgt gtgtgaatgg gaggcttcgt
301 cttagccccc aacttgagcc ttcctgcaac aaacactttt actttccata cattcaggtt
361 cagccacctc atggccaggt ggcggtcatc catggcgaca ggcggacggt tcccgcggca
421 gtgaaccctg cggtggagga tataaagtcg gaaaaggagg gctctggtgg tgaccaaagt
481 ggtgtgccat cgtaa
//
LOCUS TbMP19 510 bp DNA 10-MAY-2006
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|410109204|
COMMENT VNTDBDATE|410109205|
COMMENT LSOWNER|
COMMENT VNTNAME|TbMP19|
COMMENT VNTAUTHORNAME|Larry|
BASE COUNT 137 a 112 c 133 g 128 t
ORIGIN
1 atgttctctt cgacatttag gcgtttagct atccgtccct tgaacagggt gacgatggtc
61 ggggctatgc atgacataca agtaggattt cttgaccgtt gcagcgtgtt ccaattcaca
121 ctcacttgta ctgttcttga ctttcaaaag gtagcggagc cacaaccaaa gtctccagga
181 agtttgccat cgtctacacg cacggctcca aacccgaatg gagaggaggt tgagaagcac
241 attaataagg aacagtacac cgtcagatgt ctcggaagtg aggcttacac agaggcacta
301 aaaaattacc ttgatgatgg ctgcatagtt cgtgtaatag gacgtttgaa aaccactgaa
361 gtcgtggatg ctggtaagaa gcaaccgttt ccgtgcatca ttgtcgagca gggacggtgg
421 agtaccgttt cgcttgtgca ttccttacgg aagcaacgga gagattggca gctgcagaac
481 atacttacat cagtcgctac gttggagtga
//
LOCUS TbMP41 1107 bp DNA 10-MAY-2006
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|410110942|
COMMENT VNTDBDATE|410110942|
COMMENT LSOWNER|
COMMENT VNTNAME|TbMP41|
COMMENT VNTAUTHORNAME|Larry|
BASE COUNT 265 a 292 c 291 g 259 t
ORIGIN
1 atgcaccgcg gaccgccggc acttctgcat actgtaggcg tcgcgacacg gagcaaatca
61 ttcgcagcga gtacgaaact accagggaga ttaacacctc tcccgtcgac atcttccacg
121 ctccagccta ccaacacttt actgtcctct tcagcgggaa tagcctctct gcgccagctc
181 gtcagcgcct ctacactaac cagcacttca acaagcggca agaaacgtgt cgggtcactg
241 gatgctcact gtcgtctcct ctcaagagga acctcagccg atagttacat gccaatgacg
301 tcacgctctt tcgatgtttt tgaaggtaac aacaagcagg catggctgga tctcaaaact
361 ggctggtgcc atctctgcca agaaccacta ggtgcgacaa tgggtgtcca tattggcgac
421 cgtgatcaca ctaatctaca gtattttctg tttctctacg cagctcatgg gcgtcgatgg
481 tcaagtgagg aggttcttcg ttcctgtctc gccaccgctc cgacggtgca caactacgcg
541 acaaggcaca caacgtggga ccacttgcat gtcatggacg acgcgctgcg tcgcgctgag
601 ttggaggcgc ttcttttcca tctgacacac ccaccacaac aggccctgtc gcacgtgctt
661 cagggtcgca gcccactggg attttggtac agtggagaac gtatgtggaa gttgcgtatc
721 tcgcgcctcg tcacgcaggt gtttcccccc atctctgcgg ggatgatgac aaacttcaca
781 cagaagtgct ggggtcgtag taacggcgaa aggatgtatg atgccttaag gttgcaacga
841 ataaaggctt actatggctg gcaaccgtac gaaagtaagg agaagaaagc ctttttcgtg
901 cggcaactgc tgtgggagct gctttccgtg gaggtacgtg acgaggtaga tgaattaaca
961 aaacacatgg cggatcttgc gctacggcgt atggcgtttg agatgatctt cttgcagtca
1021 atggaataca tgcataaggt acaatatgtg tacgatttga tggggagacc cactgtggat
1081 gaacttgcag caatgaattt gctgtag
//
LOCUS TbMP42 1182 bp DNA 2-JUL-2005
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|379023525|
COMMENT VNTDBDATE|379023525|
COMMENT LSOWNER|
COMMENT VNTNAME|TbMP42|
COMMENT VNTAUTHORNAME|Larry|
BASE COUNT 300 a 291 c 297 g 294 t
ORIGIN
1 atgaagcgtg ttacttcaca tatttcgcgg tttttaccac ttgtgttgtc gcagcgtggc
61 ttgtcgactt acgcatcacc tcatgtctcg tccatgcgtt actatggagc tacaaaatgt
121 cttttggctt ccacaccaga cactccctcc tttcagtgcg gcgagtgcgg taaggctttt
181 cgtcttataa atgccttaaa tcatcacatt atgaccaagc acgcagggaa ggcaaaggct
241 atgatgaaca aggggggtaa gttggaggaa gtaaaccctg aagaaataaa aaacaaaccg
301 caaggggcaa tgtcgcaacc aacatcaccg ccaccgtcat cttcgacgtc cggtacggag
361 gccgcatcaa cctcaccaac gcattcaagc tttcccggaa taccgttttc acccgtgggt
421 ggcatagggc tcgttggaac tccagtaggt gctgcctctc atgtcgttaa tactactacc
481 actgctgcta attctgcttc tggaaatgcc ctttccgacg agaacgcgga caaaaaaaca
541 tttgtctgta cgatttgtca gaaaacattt cggttggaag ccgcccttca acaccattac
601 caggcgaagc acaacatgga gatgccgaca tcatcttcaa gttctggcgg cgccagtgct
661 caaccagtgc tgcagggtgg cgccactaca gcaggtgttg gaagtgtggg tttttcccat
721 actgaggagg aaactggcag atcagccatg ggaacacaat atgttcacag tcaagaaaca
781 atactcccgc aagccccgca atatcatctt gatgtcgcgc cgaacgcacc tgaggagggt
841 gaagtggctg cacattggcg ttgtgtcaat cattgtgtta tgttgggcgt ggtgcaaaac
901 attcaggaag ggtttgtatt tgaagacaaa gttctccagt ttacactcat cacagacttc
961 gagggaccct ctcctgggga cccggataag gactttcata cagttcgtgt gtttgatagc
1021 gattatagtt cgagggtgaa agagcaactc cgtgacggtg agtggttcct cgtcactggc
1081 agactgcgca tggtgcctca atatgatggt tccatgcgaa agtattacca ctatcctgtc
1141 atacaagtac acccgggctg tgggtcagtg ttgaaggtgt ga
//
LOCUS TbMP46 1245 bp DNA INV 2-APR-2003
DEFINITION Trypanosoma brucei RNA editing complex protein MP46 (MP46) gene, complete cds; nuclear gene for mitochondrial product.
ACCESSION AY228169
VERSION AY228169.1 GI:29293905
SOURCE Trypanosoma brucei.
ORGANISM Trypanosoma brucei
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Trypanosoma.
REFERENCE 1 (bases 1 to 1245)
AUTHORS Panigrahi,A.K., Schnaufer,A., Ernst,N.L., Wang,B., Carmean,N.,
Salavati,R. and Stuart,K.
TITLE Identification of novel components of Trypanosoma brucei editosomes
JOURNAL RNA 9 (4), 484-492 (2003)
REFERENCE 2 (bases 1 to 1245)
AUTHORS Panigrahi,A.K. and Stuart,K.
TITLE Direct Submission
JOURNAL Submitted (30-JAN-2003) Seattle Biomedical Research Institute, 4
Nickerson St., Seattle, WA 98109, USA
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT ORIGDB|GenBank
COMMENT VNTDATE|298472067|
COMMENT VNTDBDATE|298806335|
COMMENT LSOWNER|
COMMENT VNTNAME|TbMP46|
COMMENT VNTAUTHORNAME|Larry|
FEATURES Location/Qualifiers
source 1..1245
/organism="Trypanosoma brucei"
/db_xref="taxon:5691"
/vntifkey="98"
gene <1..>1245
/gene="MP46"
/vntifkey="60"
mRNA <1..>1245
/gene="MP46"
/product="RNA editing complex protein MP46"
/vntifkey="54"
/label=MP46
CDS 1..1245
/gene="MP46"
/codon_start=1
/product="RNA editing complex protein MP46"
/protein_id="AAO72965.1"
/db_xref="GI:29293906"
/vntifkey="4"
/label=MP46
/note="putative RNA binding; similar to TbMP44; TbMP46"
BASE COUNT 283 a 321 c 349 g 292 t
ORIGIN
1 atgttacgtg ttgaaaactt gcggcgttcg atgactcgcc tggctcgtca ttctctcatt
61 cgtgccgtcc ccttttcgcc tctgagtgtc ggatccagta ccgaccaaac ctttggtgcc
121 cccacccgaa caccattccg gtctcacacg tgccttcttt gcgatgtgtc gtacgagtcg
181 tggggagacc acgcagagag taccactcac atagcgcgtc atgctatttg caggactttt
241 gtatcccctg agcgacataa tgcggtaatg caacagctgt ggaagcatat tcgtcttgat
301 tttgggtacg ttgacgaggt cactcataaa aaggaggacc gtcgacgcat gcgcctcgcc
361 tccacgatgc gccacctaca ggagaaggga gtgcttcacc actcacttcc ccgtgtgacg
421 gtagacgcgc agtccgaggt atcgcttacg gtggagtcag atagctttgt gaattatatg
481 ttcctcggcg aaagctttgc gcggcaggag acgttggatc gcgtggcgcg gctgatgccg
541 cgggcagaag ctcttgaact tagtagtatc atatcgtttg ttctttcgaa gaggcgccta
601 gctcattttt tcgatatact tgacatgcgt aaaatggttt taaatggtga cagttccgac
661 gataaggcgt cggctgatgg tggcgtacca cccaccattc cacgtctgca gcaggacggg
721 aaggctgtta tcctgttcag ctgtttgggg gagttgcaaa tgttctcgcg gcgggatcga
781 tcgcacagcg tggccacacg gtcagccgcg gagcaactgg tcctcaatgt gcttggcaca
841 cacgtaatgg agaacatcat aggcgaactg gtgcacgagg cactgcagac tgtcgtggag
901 gaagggacgg cagtatggcg tgaacactgt ggtgaattga agcacaagtt atttgaaggg
961 acaaaggcgg tatcaccccc catagctacg actccaaacc ccgtgtcaaa ctctggtgga
1021 ccagaagtga cagcggacgt taatgatcaa atgtgggtgg acctttgcag attgtacgtg
1081 ctcgacaaga atggcagtgt gcctcagctt caacctacgg tgaagcgaca ctcatggcat
1141 gatgtggcgc gcgcgctgac actcgaacta acggttccga atccagtgaa caagagcgcc
1201 gttttcgctg cggctgctcc ccgccttgcc acaaagaaaa aataa
//
LOCUS TbMP47 1236 bp DNA 10-MAY-2006
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|410111004|
COMMENT VNTDBDATE|410111004|
COMMENT LSOWNER|
COMMENT VNTNAME|TbMP47|
COMMENT VNTAUTHORNAME|Larry|
BASE COUNT 314 a 290 c 324 g 308 t
ORIGIN
1 atgtttcaaa aagcacttcg tcgactgcag caacaggcat cacagaatcc accagttggt
61 tccgccaata ttccttcacc ctacgcaacg gaaggtgggc acgtccccat ttggtccatc
121 gtaaacggct tcgtgcagaa acgtaattgg gtgttccgta accctgagtg gtgtgacctt
181 tgcaaagaac ctgtggcatt gtgggtgaac catcacggtc gtaaggacca cgccttaatg
241 gacatgcact atacacaaat gatggaatat ccgaggcggt ggaaccccga ggaagttctc
301 gtggcatttt ttgacgaact acaactcccc gtagaaacgt atcagcgtag ctatacatgt
361 tacgaacgtg cccataggaa tgagctttac tccatgcttg tggagttgga ggaggccaaa
421 atgctttact ttggggagcc gcgaaacact taccttcacc gaatgcaagg tggtttgcgt
481 ggtatggacc atcagggtgc acttgtgctg caccgctaca tcctaggccc cttcatgcgg
541 ctatacccca atgctcacat acaggacttc tcaaacctcg tggactttgt aacctgcgcg
601 tacaatatgg aaactgttta cgatttgtgt ggtttctaca cacttgataa agtagcatta
661 aaggccgact ataaaccgag ctcaccggca gctttggggt taggaggaat cgccgtacac
721 tcctcccctt cgcatggatt tgttcagaac gcggcagagt cccagcagca gtcgaggcga
781 gcgagttcaa ccgcttcaac ggggtctcgt agtgctgcgg acatggatga agaggctttt
841 tcacgtaagg ctgtttttgt taggcagttg ttaggtcaac tgcgatggtt gacacttcca
901 tgtgaagagc atccggcagg ttgtaaattc ccccaacacc tgatgctctt gggtgagatt
961 tgcctcaagt atcttgtggt ggagataata gcggcacgcc tgtgtgaata tatggtgcga
1021 gtggagccgg tgtggcgtga ccatggttac gagcgggtca aactcaacgt tgataaaatc
1081 atgaaacagg gaagggatat attacccgag ccaataaagt acttttaccg accaatgtca
1141 cccaatatgg atgacttgta cagtaccaaa gtaggcgtgt tggatgaggc actggaaaag
1201 gctgcggtta ctcaatcact ctctaaaggt gtgtag
//
LOCUS TbMP49 1314 bp DNA 25-FEB-2003
DEFINITION assmebled from AQ948572, AQ951822, AQ947649, AZ221021, AQ948569, AL464930, AZ217734.
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT VNTDATE|277063643|
COMMENT VNTDBDATE|295265685|
COMMENT LSOWNER|
COMMENT VNTNAME|TbMP49|
COMMENT VNTAUTHORNAME|verdi|
BASE COUNT 309 a 262 c 381 g 362 t
ORIGIN
1 atgactcctg tatttggtac cgctgctttc ttttgtaggt tgcggtcctc gtctctgcga
61 cgattttgcc tcaatcatca acgcagggct cgcagtagcg gcagttcaat tggtattgct
121 catgaagtta cttcacttca cccatatggt tgcagcaaca atgttgttgg ttctacacgg
181 gtttggaatg aaacggagaa ttggtgcagt ctttgcttgg agccacttaa cagttggagc
241 gagcaccgcg ggaagcgcga tcacatttgt ttggagatgt tttataatgc gataactcaa
301 tacgggcgcc gctggtcacc atcgacatta tggtgggaag tggaggaatg cactttgctg
361 cgtcgccatg cttctccgcg acttgtgttg gatggtggcg agggtttttt tagtggttgt
421 attttggatt atgtacgcga ctcaactgga aagaggggag gtcttagtct tttgatggat
481 tattacgatc gaatggagca ttacaagcgg cgtttggagc tctacgcttg cattcaacat
541 ttgattgaca atggtatcgt gcgcaccgat cggggttcgc tgggcggcgg cgcgtcattc
601 cacggttctc tcgtgacatt caaggaatta tttccaaatt tagtaaatat gtttccattt
661 gcggacgcaa aggagatctc cgccttaaca caaatgatag cctcgacgta taacggtgaa
721 acggtattcg acttgtgtaa cttccagggg ttgcttccag cgggtcaagg aggaggcgat
781 acaacaggag gaaaaggcaa tacttcagga tgcggaaact cgcagcagcg actggcattc
841 aacgccgaac aaaagggaag tgaagattcg tccgttaccg catctgctga gggggtttat
901 tcatatcatt ggaaaggaat gttttgtcgc ggcgtgatgg gtcaattacg atgggcattg
961 gagtgtgata gcgttgcctg cccactgaaa cgtgccgatg gctccaagca cgtttgcgac
1021 ccctattggc aagttctttc gaaatacacc tgtcgggccc tccttgcgga aatggttttt
1081 tgtcgtgttt cgaagtatat cgtgcgcgtt gagggtgttt ggagaaaatg tggtcagaaa
1141 ttgtcgaaca aacatgtgtc gcatgggagt caaaaggaag aagaggagag ggcgcatccg
1201 ccgcgcacgt cgaattgggg ttacatacga tacatggggg atcatttgta tgatgacatg
1261 tttgggggaa acttgccaaa tgaaggggct ccgaagagat tgtctttgat gagg
//
LOCUS TbMP61 1617 bp DNA INV 2-APR-2003
DEFINITION Trypanosoma brucei RNA editing complex protein MP61 (MP61) gene, complete cds; nuclear gene for mitochondrial product.
ACCESSION AY228167
VERSION AY228167.1 GI:29293899
SOURCE Trypanosoma brucei.
ORGANISM Trypanosoma brucei
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Trypanosoma.
REFERENCE 1 (bases 1 to 1617)
AUTHORS Panigrahi,A.K., Schnaufer,A., Ernst,N.L., Wang,B., Carmean,N.,
Salavati,R. and Stuart,K.
TITLE Identification of novel components of Trypanosoma brucei editosomes
JOURNAL RNA 9 (4), 484-492 (2003)
REFERENCE 2 (bases 1 to 1617)
AUTHORS Panigrahi,A.K. and Stuart,K.
TITLE Direct Submission
JOURNAL Submitted (30-JAN-2003) Seattle Biomedical Research Institute, 4
Nickerson St., Seattle, WA 98109, USA
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT ORIGDB|GenBank
COMMENT VNTDATE|298471656|
COMMENT VNTDBDATE|298806335|
COMMENT LSOWNER|
COMMENT VNTNAME|TbMP61|
COMMENT VNTAUTHORNAME|Larry|
FEATURES Location/Qualifiers
source 1..1617
/organism="Trypanosoma brucei"
/strain="TREU427"
/db_xref="taxon:5691"
/vntifkey="98"
gene <1..>1617
/gene="MP61"
/vntifkey="60"
mRNA <1..>1617
/gene="MP61"
/product="RNA editing complex protein MP61"
/vntifkey="54"
/label=MP61
CDS 1..1617
/gene="MP61"
/codon_start=1
/product="RNA editing complex protein MP61"
/protein_id="AAO72963.1"
/db_xref="GI:29293900"
/vntifkey="4"
/label=MP61
/note="putative nuclease; contains RNAse III motif; TbMP61"
BASE COUNT 374 a 387 c 443 g 413 t
ORIGIN
1 atggagcgcg gagggcgctg cctcttcagg aggtggagta cccgcgcatt gccctccgtg
61 tctcacacac tacggtgtcg tggaacaatt tctaactcag gtggggaggg aaatgatcca
121 atcgctgaac ctcgtcgcgt gcgtctggtg ccgtctgcac ctcatgggaa caattcttcg
181 gagctatttt ctgtcggtgt ggatcccaga agtcatacat gtgatcccga tgatccatat
241 tcccacatcc aaatatacag aaaggacatg gtagcggacg ccggtggtcg agcgtttcaa
301 ctaagtgttg atgttccgtt gaaaaaattt gtggacctct tcagtgattt cgatggaaaa
361 cgttgtaagc tctgcaacga aagctacatg cagtggcata gtcatagcag tgttatcccc
421 cactcaggga gggaggcact tatgcttgag atggtccgtg catactgcgg cctaccggag
481 gatattgcaa aaatgtggtg gcatcgactc aatacgtcgc ccgcgttcaa tcgcatcccg
541 aaactgagtc atgacaatag tcacaccaga aagcgcaggt tacagtacct tctgaaattt
601 ctgaaagata gggacgtgat ccgcgacaca ttcaacgttc acaacagctc tggagctgct
661 ggtcgttcgt gggaattcga acgtctcgaa tggattgggg ataatgttgt gaagtatgtg
721 tttaacgatc ggtttaatgt catatttcct gtgcgtgagg gcggcattcg gggccgattg
781 gggtacgcgc aatttatgat agatggcaat gatggcttgg cacgcgccta tgactacttg
841 gagcttcaga agctgactct aagtgaccgg gttgtgagca aattcaagag cgatgtggtg
901 gagacattgt ttggtgaact tcagctttat atttggtctt cagagacgga cgccggcact
961 acctgttacc cacttccatt tactggcgag atgttttccc ttcgtgctct cgtgtggcac
1021 gtgatggagg agttggcaca tgtaatgttt atgtatcacg tggaacacgc gcttgcggct
1081 attcagcgtg ttgtaaggga aaatcaactg caatttatcc gtgcagatcc tgcactgcgc
1141 ggtcatgcgg acctgcagag tgagttggca aacacggttt acgctaaaaa agctgcgtct
1201 gggccaagca aactcacgtc gacaaaagtg tctcctggtg cccgtttcag ggacggtggt
1261 gcctcgtttt accacgaagc gtcgaactat gatggtttca aacgtgtgtg cactcttggg
1321 ggtctcctgc cccgaccatt ttcaccccgt gagttgacgt ccacaacgtc ttttcttcct
1381 catttgcagg aagacagtgc gatgacacgc cgagtgcctg tggactggac acgtaaactt
1441 tttgacgatt gcactggcaa cgccacgaag aaacccggag ccgccaactt tgtaccatgg
1501 caggccgtca cgccacagcc ccgttctcgt tgctctgcag aggaggctgg acgatcaact
1561 tcacgcctgg gtattcctga attgaaggac gcactactag tggccgaatt agtttag
//
LOCUS TbMP67 1791 bp DNA INV 2-APR-2003
DEFINITION Trypanosoma brucei RNA editing complex protein MP67 (MP67) gene, complete cds; nuclear gene for mitochondrial product.
ACCESSION AY228166
VERSION AY228166.1 GI:29293897
SOURCE Trypanosoma brucei.
ORGANISM Trypanosoma brucei
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Trypanosoma.
REFERENCE 1 (bases 1 to 1791)
AUTHORS Panigrahi,A.K., Schnaufer,A., Ernst,N.L., Wang,B., Carmean,N.,
Salavati,R. and Stuart,K.
TITLE Identification of novel components of Trypanosoma brucei editosomes
JOURNAL RNA 9 (4), 484-492 (2003)
REFERENCE 2 (bases 1 to 1791)
AUTHORS Panigrahi,A.K. and Stuart,K.
TITLE Direct Submission
JOURNAL Submitted (30-JAN-2003) Seattle Biomedical Research Institute, 4
Nickerson St., Seattle, WA 98109, USA
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT ORIGDB|GenBank
COMMENT VNTDATE|298471564|
COMMENT VNTDBDATE|298806335|
COMMENT LSOWNER|
COMMENT VNTNAME|TbMP67|
COMMENT VNTAUTHORNAME|Larry|
FEATURES Location/Qualifiers
source 1..1791
/organism="Trypanosoma brucei"
/strain="TREU427"
/db_xref="taxon:5691"
/vntifkey="98"
gene <1..>1791
/gene="MP67"
/vntifkey="60"
mRNA <1..>1791
/gene="MP67"
/product="RNA editing complex protein MP67"
/vntifkey="54"
/label=MP67
CDS 1..1791
/gene="MP67"
/codon_start=1
/product="RNA editing complex protein MP67"
/protein_id="AAO72962.1"
/db_xref="GI:29293898"
/vntifkey="4"
/label=MP67
/note="contains RNAse III-like motif; TbMP67"
BASE COUNT 454 a 410 c 490 g 437 t
ORIGIN
1 atgcggaact cgctcattca tcatacgcga aacctgtcag cgacaaagca aatcacgggg
61 attgtctgcg accacgtgga tgtcttcact tggggccact cccctcctga acagcacggc
121 aataagtttt cctcagggaa agcaacagca ccattctaca atgcgggaca aaggcgctgc
181 acactctgtg atgaccgtct agaaacttcc ttctctgctc actgcggcta tgtggggcat
241 gtggcgcgag tgggtatact ggagcgtgca atggaaatac tacaaaaggg ggaaaaacgt
301 gcggcgaatg gaaagagtgg tggtttaggt ggaaaaataa cagatttaga tgaaagcatt
361 aaggcacttg tgggcacctg gtggtctcga ttaaatgata caaagcggga accggcactc
421 gactacaagc gcataccatc actcagcgca tctacgacga aaaagcgatt gtggcgtatg
481 cgtttcctgc tgcagtattt gcgtgataga ggtattaccc gctacagttt gactccggca
541 aaggtagctg gcgcgggaga taacgcgttc gtacgatctg cccgtttcga gagaagtgag
601 atgattggag ataacattgt aaaagttgtg gtccctgacc gcttagttcg gctcttccct
661 gcggatgagg gcggtgtgac atataaattg gcttctattc aacaactgct cgacagtaat
721 gagggattat tggaaatata cgactatctt ggcctcaaca acatcatcgg cgtgaggctt
781 ccaaacaaca agacgaagtc agacgttgtg gaggctttgt ttggtgaact gcagacattt
841 ctttgggcaa gcgagttgtc ctgtgggtcg tgccagtacc ccgcatttcc tactgctgag
901 caccgttatg tgcgcgcgtt agttgatcac ttattgaatg aacttacgca tatggttatt
961 atgtggcgtg ttgggagcac cctcgagaac tctaaggaat atcttgccaa gtaccttcta
1021 cagggcgcac gtcaaaatgg tagtttttct actagtgcta gtggtgctac aatcgtaaag
1081 gaggtggatt gtgaccgttc ccgctacgct gtcttgccgc tgcttttgac gtttccttac
1141 tcgacatcat ctgccaataa atcagcggga ggaaagcagc caccgcttca atcttcgagt
1201 ttggctgcag cgaaaagtgt gcaggaaaga gggacgccgc ggatgttgtt tacctcacca
1261 gtagctatgc cagccgcttt acattcgcat tacaacccac cccttcgtat tgtgcgaacc
1321 attaaggatt atcagcgtga gattttaacg gtactcgaag aggaggaagt tgtgtctgca
1381 ttaatccctt gtacagattc ttcgtggggg atgaaagagg gatatatgaa ttcgcgggaa
1441 actgggagga ggaaaccgcc acatgggcag atccgcgccc catggcacga gttggcactg
1501 gaaaaatatc caagatggcg gtgtgacact gaagaagcgg tggtacgcca agccttggag
1561 cttcgactca tgcagcggaa ggtttacacc aaagggacca attggagggc attaactacc
1621 gccatggctc aacgtctcct tccgaattcc ccattggaag tagatccggt aggtgtacga
1681 cctgttagac aaaccggaag gttgctgttg acttttgaag ggactactga gcgtagggcg
1741 gcactcgcta ctagcatgtg ttttccgtcg ctagcacaat cggccggctg a
//
LOCUS TbMP81 2289 bp DNA INV 2-APR-2003
DEFINITION Trypanosoma brucei RNA-editing complex protein MP81 gene, complete cds; nuclear gene for mitochondrial product.
ACCESSION AF382333
VERSION AF382333.1 GI:14495335
SOURCE Trypanosoma brucei.
ORGANISM Trypanosoma brucei
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Trypanosoma.
REFERENCE 1 (bases 1 to 2289)
AUTHORS Panigrahi,A.K., Schnaufer,A., Carmean,N., Igo,R.P. Jr., Gygi,S.P.,
Ernst,N.L., Palazzo,S.S., Weston,D.S., Aebersold,R., Salavati,R.
and Stuart,K.D.
TITLE Four related proteins of the Trypanosoma brucei RNA editing complex
JOURNAL Mol. Cell. Biol. 21 (20), 6833-6840 (2001)
MEDLINE 21448979
REFERENCE 2 (bases 1 to 2289)
AUTHORS Panigrahi,A.K. and Stuart,K.D.
TITLE Direct Submission
JOURNAL Submitted (21-MAY-2001) Seattle Biomedical Research Institute, 4
Nickerson St, Seattle, WA 98109, USA
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT ORIGDB|GenBank
COMMENT VNTDATE|298577088|
COMMENT VNTDBDATE|298806335|
COMMENT LSOWNER|
COMMENT VNTNAME|TbMP81|
COMMENT VNTAUTHORNAME|Larry|
FEATURES Location/Qualifiers
source 1..2289
/organism="Trypanosoma brucei"
/strain="TREU427"
/db_xref="taxon:5691"
/chromosome="II"
/vntifkey="98"
mRNA <1..>2289
/product="RNA-editing complex protein MP81"
/vntifkey="54"
/label=mRNA_1
CDS 1..2289
/codon_start=1
/product="RNA-editing complex protein MP81"
/protein_id="AAK64278.1"
/db_xref="GI:14495336"
/vntifkey="4"
/label=CDS_1
/note="similar to the sequence found in Genbank Accession number AC008031; similar to MP42, MP18 and MP63"
misc_feature 619..684
/vntifkey="21"
/label=Misc_Feature_1
/note="Region: C2H2 zinc finger motif"
BASE COUNT 575 a 596 c 652 g 466 t
ORIGIN
1 atgagacgcc tcacccgccg cagtggccgt ctcagcggca agggcaacgg cggttcatgc
61 ctccaaatgt ccccaacaca tgtgggggcg gttgtcacgt gggcgttaaa ccgtttgatg
121 ccgctgcaca cccgcacaat tccactccgg tgttcgcttc cgacacctga aagtggcacc
181 actgagccac gcgagctctg cttttacgaa accttcgaac ttactgagga ggatgtacac
241 tatttattgc ttcatgaagc acatgtgaag catggagtac ttttaaatgt tccgccacag
301 ttagcaccaa atggaacgcc tcccgaggtg ccggaggtga ttatgccagc agcacagttg
361 gagcgcatgg gcgggatgaa attagcttac gaacccacac atctgccgcc accacttcac
421 acgacaggtg cacggcagtt agttctagac gaaagtttct acacgacacc aactaaggaa
481 aagaaggcta caaccaccgc tgtttcacac gtgagtgaat cgacggcggc gtcgggcgga
541 agaggcggtg caagtgccac ggcagctggt accgctttac cgcctcgctt gcctccggac
601 ccaacaatga agtttcactg cagcgcctgc ggcaaggcct ttcgcctgaa gttttctgca
661 gaccaccatg tgaagttaaa ccatggatca gatccaaaag cggcggtggt tgatggtccc
721 ggagagggcg aacttctcgg gggagcagta acgataacta cagcaaaggt agcaaagcat
781 tcatcgtctg ctgcaagcgg aactgcctca cgggcgggtg attctgcaac tctggatgta
841 aagcaacaac cggatccgca aaaggagttg tctgcccctg gcatcagcgc cgtgaagata
901 ccgtacagta aagctgtgct ctcgctcccg gatgatgagc ttgtggacga gcttcttatc
961 gatgtgtggg atgcggttgc ggctcaacgt gatgatgtac cgaagtcaaa tagtgcaaac
1021 atcttcctgc cgtttgcctc cgttgtcacg ggcactgccg acagacgcaa agagatggaa
1081 gcggttgctc ggcccaccgc ccgggccaca cctgagggag ccgcgccagg aattaaaagg
1141 cccggagcga tggcgggcgg ggccgtggcg gttggaaagg gccgcagtgg cggacagata
1201 ttacccatcc gagaactgat aaagaaatat ccaaatccct tcggtgactc ccccaacgcg
1261 gcggtgcagg atctggaaaa tgagccgctg aatccgtttt tgcctgaaga ggagttggct
1321 gcgcagttgc aggtagcgtg tgaggaagat actgttgtaa ctccctccgc atgcaccaca
1381 gatgtttcca ctggctccgt cattggaaaa aagggttccc tggagaagct aaaggaaaag
1441 cttcgcggca cgcgaccaag tatggcagct tccgcagcga aacggcgctt cacatgccca
1501 atctgcgtcg aaaagcaaca aacacttcaa caacagcaaa gtgaaaatgt cggcagcggt
1561 ttctgcacgg atattccatc ttttaggcta cttgatgctc ttctcgacca cgtggagtcg
1621 gtgcacggag aggagttgac ggaggatcaa ctgcgcgagc tatacgccaa gcaaagacag
1681 tctacacttt atccacagaa gtcctctacc ggtgatggag ccgggagccg cgaaactcct
1741 gatgattcgg aaaagaaaga aggtagcgtc ggcaatacca atatggatga gctgaaatct
1801 cttccagaag aagtcaggcg ggtcgtacca cctgcccctg tcgagcaaga cgcattggca
1861 gttcacatcc gcgccgggag taatgcgcta atgattggtc gcatagcgga tgtgcaacac
1921 ggtttccttg gtgccatgac cgttacgcag tatgtccttg aggttgacgg tgatgagaga
1981 ataaattcaa agggagtaac cacaccggct tcagcgtgca caccggaccc agcctccaca
2041 aaggcagttg aagcaaaggg tgaagaaggg gaagtggtgg aaccggagaa ggagtttatt
2101 gtcattcgat gtatgggtga caacttcccc gcctcattgt tgaaagatca ggtgaaactc
2161 ggcagccgtg tgctggtgca aggcacgttg cgtatgaata ggcacgttga cgacgtctca
2221 aaacggttgc atgcgtaccc cttcatccag gtggttccac ccctcggcta tgtgaaagtt
2281 gtagggtaa
//
LOCUS TbMP90 2457 bp DNA INV 30-MAR-2003
DEFINITION Trypanosoma brucei RNA editing complex protein MP90 (MP90) gene, complete cds; nuclear gene for mitochondrial product.
ACCESSION AY228165
VERSION AY228165.1 GI:29293893
SOURCE Trypanosoma brucei.
ORGANISM Trypanosoma brucei
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Trypanosoma.
REFERENCE 1 (bases 1 to 2457)
AUTHORS Panigrahi,A.K., Schnaufer,A., Ernst,N.L., Wang,B., Carmean,N.,
Salavati,R. and Stuart,K.
TITLE Identification of novel components of Trypanosoma brucei editosomes
JOURNAL RNA 9 (4), 484-492 (2003)
REFERENCE 2 (bases 1 to 2457)
AUTHORS Panigrahi,A.K. and Stuart,K.
TITLE Direct Submission
JOURNAL Submitted (30-JAN-2003) Seattle Biomedical Research Institute, 4
Nickerson St., Seattle, WA 98109, USA
COMMENT MP90
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT ORIGDB|GenBank
COMMENT VNTDBDATE|298471339|
COMMENT LSOWNER|
COMMENT VNTNAME|TbMP90|
COMMENT VNTAUTHORNAME|Larry|
FEATURES Location/Qualifiers
source 1..2457
/organism="Trypanosoma brucei"
/strain="TREU427"
/db_xref="taxon:5691"
/chromosome="I"
/vntifkey="98"
gene <1..>2457
/gene="MP90"
/vntifkey="60"
mRNA <1..>2457
/gene="MP90"
/product="RNA editing complex protein MP90"
/vntifkey="54"
/label=MP90
CDS 1..2457
/gene="MP90"
/codon_start=1
/product="RNA editing complex protein MP90"
/protein_id="AAO72961.1"
/db_xref="GI:29293894"
/vntifkey="4"
/label=MP90
/note="contains RNAse III-like motif; TbMP90"
BASE COUNT 569 a 584 c 683 g 621 t
ORIGIN
1 atggggctac attggcccct ggcgcgtagt tccaactggt gccacatgcg ggcgttgagt
61 aacgaacatt tgcggcgtcg ggttggcgcc gccgtgcgca gcattgcctc aacggcaccc
121 tgttttgctt tagaacgggt tgaggtggcg cattcgcatg cttattcccg ccgaggcgtg
181 acagtgggct ttacgtcatc ttcttcgtcc cctagcggca aaactggaag tggtgggctc
241 tcaccagcat cacagtcgtt gcattcatcg tcatcttttg atgcgagtaa tggggatgtg
301 ctagccaatt acgtcaactt cgttgcagat gacgctaccg gacctgctgc gaccaaagag
361 aacggtgcgc agccaatgcg tagtttgagg tccgcctctg ctgtcgaaaa tcttctgttt
421 accgacgcag cgaagaacta ttgccgtctc tgcatggagg aggtgcaggt gtcgcccaag
481 gcgcatatta gcactcctta ccgtgggagt cacacaaatc acacctgtcg ggaggtcgta
541 cttgactctc tcgctctgct tgccattcgg gggtacccta tcgatgatgt ttacttcgtg
601 tgggcggaca cgctctatca atcatctgtc tttcaacgca tcccagagct cgtctccccg
661 cgttggactg ttgataagcg gagtgaagta ttggctaaga ttctatttat gctaaaagac
721 atgggcgtta tcgatatttc attagccgcc caggcacccg atttgtttga taacacggca
781 caacaagtgc accaccgccg gcgtgtggcg ttcgaaagat tagaatatat cggtgataac
841 tcgtggggaa accatctttc caatcgtatg atgctcctat ttcccgatcg ccagtggact
901 tacagccaaa acgcctacac cttcaactgc tttcgtgatg cgtgcgagat gaatgtgacg
961 ttggaattta tgttcgatac tctacgtgtg ggggagttac ttccacctgg tgtacgggaa
1021 aaattgggaa cggggaagat aaaagcagat gtggtggaag ctgttattgg tgagttgcac
1081 gtgacattgt gggggcttga gccgcagctg tatgattctg tgtgctttgt tgaaattaac
1141 ggcgtgggag aggcccgtct ggcagcgttg gtgcagcact gtctcacaga aatatatgac
1201 cttatcgtgc tttcttacgt tcaggaactc agtggatctg cggttccgtt agcaaagcag
1261 atagctgccg atcgcatatg gaacagcgtg tatcctcccg tacgaaaggc gaaggatcgt
1321 gcacctgggg gacgaaaaag tcgatccact gttgtgaacg tagtcggtgt aggggaggta
1381 cggcaacttc cgtcacttcc ttcgctcttt cctgcagcgt caaagcgacc cacacgggct
1441 ccacatccac ttcgccgact taggaagtta ggggagattc ctgaagaaac tgtgtgtgct
1501 ggtacgaaca aggatgtttt tgtccatctg atcgagagtt atgaacgtct agatatgttg
1561 gatgactctc tccttcccac attgaatatg cgacggctcc aagacgttca attctcaaag
1621 ctgaagcgac agttggttcc ctcactctcc cctgccgcgt tggaagaatt gcacaactgt
1681 aaagagttgg acgctgaatc ggttacaccg cacaaggttg gcgacaagga ggttgcgacg
1741 gatgaacggg tgctggactt agaagaggtt tatttccgtg ataagtattt tgacctcttc
1801 ccaactccgt tgccgaatga agttgtcaca aaagagggag actgtgacaa aagacaaagc
1861 ggtgcctcca cgagcagggc ggtcatcata tcgctgccac gagggtttga cgggagtcga
1921 ccctgcaaca gggcgcaact ccacatggct cgaaacacaa tttatccttc actgactgaa
1981 agaccggccc atagtcccac tgctggtatt acgaagggtg atcgtgtgtg tctcttttct
2041 ctttcagtct atgtgcctcc agatacgaaa aggccttctg cgggcgtagt gacagacaag
2101 aaccttcact ttggtgaatt tgcatttcat ggcgtgcgga tcaagggaat tgaatgtgcc
2161 tctgaaccag aatgtattag caggcgaagc aatgctcctg gttccgatgt tgggacctca
2221 cttaaccgca gttcatggaa agaaggaggt gacaattcat gtggaacact aactgttgag
2281 gatggtaccg gagagaactc ggtagttggg gaagatggcg atactggtgg gaatggcggg
2341 gaaggtaagg ctgaagatgc aacaggcaaa cacctactgc gagccaaatg gtgtcgtgaa
2401 aatcccttct ttccacgggc gtcgctacct cttttaggca tctcggttgg tgcgtga
//
SOURCE
ORGANISM
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
FEATURES Location/Qualifiers
CDS 1..1761
/vntifkey="4"
/label=ORF
BASE COUNT 364 a 516 c 529 g 355 t
ORIGIN
1 atgaaccgct gtggtgtaaa gaggcgcctt tcactgcggc tgccagtggt gtcaatcgca
61 ggccttcggc ggcgagcgcg aagagcagca ggcacgcgta gcggcagtgt tgcactttgt
121 gtctctgctg cgtctattgg cagtagcacc agcctcgcta gcacccctgg ccggaaagct
181 cccgtgtact acaactttgc cacgccggtg agtgtgctac gtgacgcggc gggtagtgaa
241 agtgtgtctc accgacgccc gcgccgcgag gcgccggctc gagagggagg gctgctactt
301 gtggcgccgc gcacgccgaa cccgaacgac ccgcttcaac ggctgaacat ttttcgacgc
361 gagttttccg atttcagcag cgccgccaag ctcaatccga atatcatggt gagcgtcgac
421 accagcacgc gccgcttcct cgaaatgttc tgtgacttcg atgccaaacg ctgcaagctg
481 tgcaatgaga cgttcttgca gtggcacatc cacgccaacg gcattccgca cgcggggcga
541 gaggggatgc tgctggagct tgttcgcccg tattgtggaa ctccggatga actcatagag
601 atgtggtggc agcggctgaa ctcgtgtgct gcgtttcacc ggattcccgg cttgagccac
661 gacaacccac acgagcgcaa gcggcgtctg ctatatctgt tgaaagtgct gaaagaccgc
721 ggcatccttg tagagacgtt caacgtgagt gacaaccagt ccaccaactc agcgcgctcg
781 tgggagtttg agcgcctcga gttcgtgggc gacaacgtgg tcaagtacgt gttgaacaac
841 attatttcct gtgcattccc acctcacgag ggcggcacaa aaggaaagat gacgtgcttt
901 cagttcgtga tggacggcaa cgatggtttg gcacgcggct acgaccacct cgacctccag
961 cagctcgcct ccagccctag ggtagtcagc aaatttaaga gcgacattgt cgagaccctg
1021 ttcgcggagc tgcagatgta cctgtggagc acgcagcacg atattggcac ctgtcctctt
1081 gtgtttccat ttacgaagga tatttacacc ctgcgggcgc tggtacagca tgtgctgtac
1141 gagctgggta ttgaactctt tctctaccac attcgccaca ttaacggcat gctacaacgc
1201 gtgatgcgag agaatcacct gcagttcgta aaagcagatt ccgcgctgaa gcccagggcg
1261 ggcgccagga ccgggagctt gggcgtgagc acgcgccgtg gtgactggag cgatgacgac
1321 gatgactacg actgtccgca aagctacggt acgccggcgg tgtccgcccc cacggcagcc
1381 ctcatgaagg tgcgctcgca gcgcacccac gtgcaaggca ccggtgcggc gctgttcttt
1441 gcctccacaa actacgataa cttcaagcgc gtggtaccga tcggcggtct tttgccgcgg
1501 ccatttgcga ggcaggattt gtcagtcatc ccaaaccaca tgccgcacct ccggagcgat
1561 ggcgcgatga cgcggaggat gaggagggtc gggaatgccg gttggtcgac cctgcacgcc
1621 acagcaacag ctctgaccac gttggaaagc gttgccgacg gtctcgccct cagtgccgaa
1681 acaacgcctc gtgtgggcag cgagccagta cgcttgtcag ttccgcgtct caaggacgag
1741 gagctcattc cagagctgat ttaa
//