LOCUS KTCSGRB 1012 bp DNA circular ORG 13-NOV-2002
DEFINITION Trypanosoma brucei DNA fragment.
ACCESSION L25589
KEYWORDS conserved sequence; guide RNA.
SOURCE
ORGANISM Trypanosoma brucei
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Trypanosoma.
COMMENT NCBI gi: 468931
COMMENT EMBLRFLN|RN [1]
COMMENT EMBLRFLN|RP 1-1012
COMMENT EMBLRFLN|RX MEDLINE; 86174895.
COMMENT EMBLRFLN|RA Jasmer D.P., Stuart K.D.;
COMMENT EMBLRFLN|RT "Conservation of kinetoplastid minicircle characteristics without
COMMENT EMBLRFLN|RT nucleotide sequence conservation";
COMMENT EMBLRFLN|RL Mol. Biochem. Parasitol. 18:257-269(1986).
COMMENT EMBLRFLN|RN [2]
COMMENT EMBLRFLN|RP 1-1012
COMMENT EMBLRFLN|RX MEDLINE; 86174900.
COMMENT EMBLRFLN|RA Jasmer D.P., Stuart K.;
COMMENT EMBLRFLN|RT "Sequence organization in African trypanosome minicirclesw is defined by 18
COMMENT EMBLRFLN|RT base pair inverted repeats";
COMMENT EMBLRFLN|RL Mol. Biochem. Parasitol. 18:321-331(1986).
COMMENT EMBLRFLN|RN [3]
COMMENT EMBLRFLN|RP 1-1012
COMMENT EMBLRFLN|RX MEDLINE; 94164974.
COMMENT EMBLRFLN|RA Riley G.R., Corell R.A., Stuart K.D.;
COMMENT EMBLRFLN|RT "Multiple guide RNAs for identical editing of Trypanosma brucei
COMMENT EMBLRFLN|RT apocytochrome b mRNA have an unusual minicircle location and are
COMMENT EMBLRFLN|RT developmentaly regulated";
COMMENT EMBLRFLN|RL J. Biol. Chem. 269:6101-6108(1994).
COMMENT This file is created by Vector NTI
http://www.informaxinc.com/
COMMENT ORIGDB|EMBL
COMMENT VNTDBDATE|283174386|
COMMENT VNTNAME|KTCSGRB|
COMMENT VNTAUTHORNAME|Larry Simpson|
COMMENT VNTOAUTHORNAME|UNKNOWN|
FEATURES Location/Qualifiers
source 994..993
/db_xref="taxon:5691"
/kinetoplast
/sequenced_mol="DNA"
/organism="Trypanosoma brucei"
/strain="EATRO 164"
/vntifkey="98"
misc_feature 994..115
/citation=[1]
/citation=[3]
/standard_name="conserved sequence"
/vntifkey="21"
/label=CON
/note="conserved in minicircles; putative"
misc_feature 75..87
/direction=LEFT
/evidence=EXPERIMENTAL
/vntifkey="21"
/label=CSB-3
/note="conserved among kinetoplastid minicircles"
repeat_region 225..242
/citation=[3]
/citation=[2]
/rpt_type=INVERTED
/vntifkey="34"
/label=RPa
/note="putative"
repeat_region complement(347..364)
/citation=[3]
/citation=[2]
/rpt_type=INVERTED
/vntifkey="34"
/label=RP1
/note="putative"
repeat_region 382..399
/citation=[3]
/citation=[2]
/rpt_type=INVERTED
/vntifkey="34"
/label=RPb
/note="putative"
repeat_region complement(508..525)
/citation=[3]
/citation=[2]
/function="putative"
/rpt_type=INVERTED
/vntifkey="34"
/label=RP2
/note="putative"
repeat_region 663..680
/citation=[3]
/citation=[2]
/rpt_type=INVERTED
/vntifkey="34"
/label=RPc
/note="putative"
repeat_region complement(792..809)
/citation=[3]
/citation=[2]
/rpt_type=INVERTED
/vntifkey="34"
/label=RP3
/note="putative"
misc_feature 1..9
/vntifkey="21"
/label=CSB-1
/note="Add by Min Hong"
misc_feature 29..36
/vntifkey="21"
/label=CSB-2
/note="Add by Min Hong"
misc_feature 247..290
/vntifkey="21"
/label=gND9(63-91)
misc_feature 437..473
/vntifkey="21"
/label=gA6(412-448)
misc_feature 711..768
/vntifkey="21"
/label=gCR3(35-84)
misc_feature 603..668
/vntifkey="21"
/label=gCYb(45-94)
BASE COUNT 382 a 68 c 211 g 351 t
ORIGIN
1 agggcgtgca gatttcacca tacacaaatc ccgtgctatt ttagggggtt tttgaggtcc
61 gaggtacttc gaaaggggtt ggtgtaatac acacagggtt ttccgggggt ttttcgggat
121 tttcttgtga gattgggaga tacactgtgt agtagttgtt gttgatcatt tgtattgagg
181 aaattagtct ttaaatctgg gctacacagg gtttgtggta gagaggaaat agataataga
241 tagataatga atagataata taaagttaga tatatataca aacatataag gtgagcattg
301 acgtttatga tttatgatat ttatatggta tatttaatta tttatttatt tattacatta
361 ttttaactgt ctagaaaaag ataaatgaga taatagatag aattaatagt atttatatag
421 ataattagtt atataagaca caatgaagaa atgcactcta aaatgcacag tgattataag
481 tatatgatga tattaatatt aactacatat ctattattat attttatatc taggatgcaa
541 gaaatagcag tataattgga ggatttagac attagattgg gagatttact gtgttggagg
601 gagatagtaa aagacaatgt agatttctga gtaatgggga ggataactac tctctaggga
661 agaaaataaa ataatagata gataataaag ttaaagttaa atattaatgt aatatataaa
721 atgtacatac gaacgataaa agggcagtga aattagataa ttatatatat tatagttaaa
781 ttattaaatt atatctatta tattatttta attaaaggat gagaataagg tgttagaagt
841 gcgatgataa ataagaattt taaatatgtg gtaggtaata agagtgataa atagaaagta
901 ctgtaagata tagattaagg tggtgtagat aagggttagt gaattttagt gaattttagt
961 gaattttagt gaattttagt gaattttgag cttgaaaaaa ctgaaaatct ta
//