Guide RNA/mRNA alignment for T. brucei NADH dehydrogenase 7 (ND7,MURF3)
1 UGAUACAAAA AAACAUGACU ACAUGAUAAG UAuCAuuuuA uGuuAuuuuu
|: |||XXX|||| ::||||:|:|
UU AUAUAUAAAU GUAAUAGAGA
51 GGuAGuuuuu uuACAuuuGu AuCGuuuuAC AuuuGGUCCA CAGCAuCCCG
::||||||:| |:||||:||| |||||x|
UUAUCAAAGA AGUGUAGACA UAGCAUAUA gND7[563]
| | |:||||||:| |||:|:|||| |:||::|||| | ||||
AUA AGUGUAAAUA UAGUAGAAUG UGAAUUAGGU GACGUAAAUA
101 CAGCACAuGG uGuuuuAuGu uGuuuAuuGu AuuuuuGuGG uGAAuuuAuu
: :|X||:|:|
UAUA gND7[550] UUAAAGUGA
151 GuuuAUAUUG AuUGuAuuAu AGGuuAUUUG CAUCGUGGUA CAGAAAAGUU
:|:||:|:|: |:|:||:||: |||||||||: ||||||:||
UAGAUGUGAU UGAUAUGAUG UCCAAUAAAU GUAGCAUAAA UAUA gND7[506]
201 AUGUGAAUAU AAAAGUGUAG AACAAUGUCU UCCGuAUUUC GACAGGUUAG
251 AuuAuGuuAG uGuuuGuuGu AAuGAGCAuu uGuuGuCuuu AUGuuuuGAG
301 uAuAuGuuGC GAuGuuGuuu GuCGuuACGu uGuGCAuuuA uGCGuuuAuu
:XX|||| ::|||:||||
UUAAAAU GUGCAGAUAA
351 AAuuGuAGAA uuuACCCGuA GuuuuAAuGG uuuGuuGuGu AuAuCAuGuA
||||::|||| |:|||||:|| ||||||||:X X|
UUAAUGUCUU AGAUGGGUAU CAAAAUUAUA UA gND7[398]
|||||X:|| :||:||||:| ||:::|||:| ||||||||||
AAUGGAUAU UAAGAUUAUC AAGUGACAUA UAUAGUACAU
401 uGGuuuuGGA uuuAGGuuGu uuGuCUCCGu uGUUAuGAuC AuuuGAGGAA
|
A gND7[385]
451 CGUGACAAAu uGAuGACAuu uuuuGAuuuA uGUUGuGGuu GuCGuAuGCA
501 uuuGGCUUUC AuGGuuuuAu uAGGuAUUCU UGAUGAuuuu GuuuuuGGuu
551 uuGuuGAuuu uuuGuuGuuG uuGAUAAuAu CAuGuuuGuu uGuuAuGGAu
601 uGuuAuGAuu uGuuAuuuGu GGGuAAUCGu uuAuuuUAuu uGCGuuuGCG
651 uGGuuuGuCA uuuuuuGAuu uAuAuGAuuu AGuuuuuAAU AGuuuAAGuG
701 GuGuuuuGuC uCGuuCGuuA GGuAuGGuGu GAGAuuGUCG uuuAuuuAGu
751 uGuuAUGAGu UGuAuuuuAu GuuuuGuuAu GAuuAuuGuu uuuGuuuuAu
801 AGGuGAuGCA uuuGAUCGuu uAuuuuuACG uuuGuuuGAU AuGCGuAuGA
:||:X| :|X:|||:|| :|:||:|||: :::::||:|| ||:||:|:||
UUAUUU GAUUUAGUAA GUGAAGAUGU GGGUGAAUUA UAUGCGUGCU
:|||:|| :|:||:|||: :::::||:|| ||:||:|:||
UUAGUAA GUGAAGAUGU GAGUGAAUUA UAUGCGUGCU
:|||:|| :|:||:|||: :::::||:|| ||:||:|:||
UUAGUAA GUGAAGAUGU GAGUGAAUUA UAUGCGUGCU
851 GuuuGuuGAu uuGuAAGCAA uGuuuuuuuG uuGGuuuuuu uGuuuuuGGu
:||||||||| ||||| |X|
UAAACAACUA AACAUA gND7[177A] UAA
:||||||||| |||||
UAAACAACUA AACAUA gND7[177B]
:||||||||| |||||
UAAACAACUA AACAUA gND7[177C]
901 uuuGuuuGuu uGuuuGAuuA uuuAuAuuGu GAuAuuACCA uuGAGACCAu
||::|:|:|| |:|::||:|| |:||:|:||| ||||||||| ||: :
AAGUAGAUAA AUAGGCUGAU AGAUGUGACA CUAUAAUGGA AAUAUA gND7[150]
951 uAuuAuGuuA uuuuAuAGuu uGuGGuGuuG uuGuuuGCCG GGuAuAUCAu
1001 uuGCUUGUGu uGAACACCCC AAAGGuGAGu AuuGuuuGuu AuuAUGuuuu
1051 uGuGuuGGuu uAuGuuCUCG uuuACGuuuG CGuuGuGCGG AuuuuuuGCA
||X||:||:: |:||:|:||: |:|:|:||||
AAUUGUAAGU GUAAUAUGCU UGAGAGACGU
|:::| X||:|:XXX: |||||:|||: |::|||||X| |:|:|:||||
AUUGA UUAUAGAUAU AAAUGUAGAU GUGACACGGC UGAGAGACGU
1101 UAUUUGuuuA uuGGAuGuuu GuuuGCGuGG uuuuuuAuuG CAuGAuuuAG
|||X:||||| ||||||:||| || |
AUAUGCAAAU AACCUAUAAA UAUA gND7[59]
|||||||||
AUAAACAAA gND7[65]
1151 uuGCCGuuuu AGGuAAuAuu GAuGuuGuuu uuGGAuCCGU AGAUCGuuAG
1201 uuuuAuAuGu GAGGUUAUUG uAGGAUUGUU UAAAAUUGAA UAAAAA